... sequence) promode.pdbj.org Promode Elastic (Database of normal mode analysis of PDB data)

Functional Details Page is added in each result of the PDB browser (xPSSS).

... and CATH databases which give domain definitions for a large number of PDB entries using rather well accepted methods. In Structure Navigator we also utilize ...

Announcement: Experimental Data Release Policy Clarification Effective February 6, 2013, coordinates and experimental data deposited in the PDB will follow the same release status. ( wwPDB News... ) Questions should be sent to info@wwpdb.org.

Functional Details Page has been revised for each result of the PDB browser(xPSSS), so that the correct chain names appear.

... interactions. The workshop provides PC-practices for compound-protein 3D data in PDB (Kawabata), comparisons of protein 3D structures (Rozewicki & Standley), and drug target database ...

A new publication in Acta Cryst D announces the mandatory submission of PDBx/mmCIF to the PDB for crystallographic depositions. (wwPDB news)

... together with molecular models. The EDMap viewer is integrated into the Mine PDB Entry Explorer via a link in the Database Information panel. Clicking on ...

Effective December 6, 2010, deposition of chemical shift data will be mandatory when submitting NMR entries to the PDB. ( more... )

... —that is, it threads a specific amino-acid sequence onto a specific PDB structure, patching up the gaps as best it can. URL: https://pdbj ...

Deposition of chemical shift data has become mandatory when submitting NMR entries to the PDB. ( more... )

The number of biomacromolecular structures available in the PDB archive now exceeds 70,000 .( more... )

... (6 pages) - 日本語 2021 Calendar for celebrating 50th anniversary of PDB - - English A4 size, starts from Sunday (36MB) A4 size, starts from Monday ...

Announcement: PDB Archive Version 4.0 to be Released Summer 2011 ( wwPDB News... )

... 1000. These files will be available from ftp://ftp.pdbj.org/pub/pdb/data/structures/all/structure_factors/. Questions should be sent to info@wwpdb ...

Throughout 2021, the wwPDB will be celebrating the 50th anniversary of the PDB archive. The inaugural symposium will be held May 4-5, 2021 in ...

... can be seen with the PDBx/mmCIF files with PDBj's Mine PDB Explorer service. Besides PDBx/mmCIF other STAR formatted files should also work ...

... (https://data.pdbj.org/pdbjplus/mine2/dump/). The following files are available: - PDB data: https://data.pdbj.org/pdbjplus/mine2/dump/pdbj.mine2.dump - chem ...

From January 15, 2011(JST), the wwPDB will resume the practice of providing advance notification of PDB entries that are about to be released in the following week.( wwPDB News... )

... especially in Asia and Japan through the international collaboration for BMRB and PDB.

... . Individual sponsorships are also available. Consider supporting the next 50 years of PDB's spirit of openness, cooperation, and education with a donation to the ...

The FTP protocol for file downloads has been losing popularity over the years in favor of HTTP/S. There are many advantages of HTTP/S including speed, statelessness, security (HTTPS), and better support. Importantly during the past 2-3 years the main web ...

Molmil and jV can load polygon-xml files to display non-PDB 3D structures, such as e.g. electron densities and surfaces. The polygon-xml schema file is available here.

PDBj starts the following two new services: Structure Navigator, a tool for querying the PDB using structure similarity, and GASH, a robust structure alignment program.

Announcement: PDB Archive Version 4.0 to be Released July 13, 2011 ( wwPDB News... )