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[wwPDB] Paper Published on NMR Restraint Validation

... , Gaetano T Montelione, Geerten W Vuister, Jasmine Y Young (2024) Structure 32, 1–14: doi: 10.1016/j.str.2024.02.011 The wwPDB plans ...

[wwPDB] Coming July 29: Improved Carbohydrate Data at the PDB

... entry. As part of this process, we have standardized atom nomenclature of >1,000 monosaccharides in the Chemical Component Dictionary (CCD) and applied a branched ...

eF-site

... Shift + drag In order to use jV, the Java Runtime Environment (JRE) 1.6 or later must be installed on your computer. jV is freely ...

[wwPDB] Access Improved Carbohydrate Data at the PDB

... entry. As part of this process, we have standardized atom nomenclature of >1,000 monosaccharides in the Chemical Component Dictionary (CCD) and applied a branched ...

We will exhibit at \

... deepen their understanding for biomolecules. The details of exhibition are as following: 1. "Watching" by accessing PDBj database and browsing protein molecules with CG in ...

EDM viewer

... the center of the calculated map. The contour level is chosen as 1 sigma of the map for 2Fo-Fc and 2 sigma for Fo ...

PDBj luncheon seminar at the 55th Annual Meeting of the Biophysical Society of Japan, September 21, 2017

... served) ahead at the reception counter on the day. - seminar summary(pdf 1.8MB) - program(pdf 3.8MB)

A paper describing PDBj's new tools and activities published in Protein Science.

... ., Kobayashi, N., Fujiwara, T., Kurisu, G. and Nakamura, H. Protein Science 27 (1): 95-102 (2018)

news on 2016-1-8

jV 4.4.5, signed with updated certification, has released. The certification used to sign jV 4.4.4 will expire on Jan. 21, 2016. After expired, it doesn't work as applet. So we recommend for all administrator of web servers that include jV applet pages to ...

Theoretical Models

... PDB separated theoretical model coordinate files from the main archive beginning July 1, 2002. After that date, the main archive has consisted of structures determined ...

What is ProMode-Elastic

... and water molecules are excluded currently to suppress the number of variables). (1) Independent variables and representation of molecular structures A dihedral angle is used ...

Structure Navigator

... below. * You will be able to check the results for one week. 1. When the search is finished, the URL of the result page is ...

NER COLOR

The NER score is evaluated on a per-residue basis, and expressed as an integer from 0 (worst) to 9 (best). The following color scale is used to represent each integer value: 0 1 2 3 4 5 6 7 8 9

News on 2014-12-3

... signature is updated. The certificate used for signing to jV 4.4.1 will expire on 21th Dec. 2014, so you need update the jV ...

Structure factors

... factors file is required to deposit X-ray diffraction structures after February 1, 2008. For descriptions and examples of specific tokens, please refer to the ...

PDB ID

[PDB ID] A PDB ID is a unique 4-character code for each entry in the Protein Data Bank. The first character must be a number between 1 and 9, and the remaining three characters can be letters or numbers.

237992

PDB entries from 2025-06-25

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