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Coming Soon: New NMR and 3DEM Validation Reports for Archived PDB Structures ( wwPDB News )

Coming Soon: New NMR and 3DEM Validation Reports for Archived PDB Structures (wwPDB News)

downloading PDB data in various formats -FAQ

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The new version (4.5) of jV molecular viewer provided by PDBj is now available. From this version, it can load and save in mmCIF format for small molecules (chem_comp mmCIF).

The new version (4.5) of jV molecular viewer provided by PDBj is now available. From this version, it can load and save in mmCIF format for small molecules (chem_comp mmCIF).

provision of PDB data in the form of CD or DVD -FAQ

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Links to Molmil viewer do not appear. / Molmil does not work.

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The OS crashes when the Enable button on the Molmil page is clicked. -FAQ

The drivers supplied with the OS can cause the system to crash depending on the hardware specifications when Molmil is executed. We advise users to use Molmil in another environment in case they experience problems. If possible please upgrade to the latest ...

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Coming soon: Updated X-ray Validation Reports for Archived PDB Structures ( wwPDB News )

Coming soon: Updated X-ray Validation Reports for Archived PDB Structures (wwPDB News)

wwPDB Deposition Annotation System Now Available for NMR and 3DEM Structures ( wwPDB News )

wwPDB Deposition & Annotation System Now Available for NMR and 3DEM Structures (wwPDB News)

news on 2016-1-8

jV 4.4.5, signed with updated certification, has released. The certification used to sign jV 4.4.4 will expire on Jan. 21, 2016. After expired, it doesn't work as applet. So we recommend for all administrator of web servers that include jV applet pages to ...

Protein Globe

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The Protein Globe service has been discontinued from January 2016.

The Protein Globe service has been discontinued from January 2016.

News on 2015-12-18

NBDC portal. The user can search the wwPDB/RDF data along with other data resources through a SPARQL endpoint. See RDF Portal for NBDC for more details." /> The wwPDB/RDF data are now available from the NBDC portal. The user can search the wwPDB/RDF data ...

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About Asymmetric unit and Biological unit

Introduction The atomic coordinate data in PDB is "asymmetric unit", which includes minimum essential. It doesn't always mean actual functional unit in organisms. The functional structures are called "biological unit", some of them are equal to the ...

The static version of the PDBj web pages for old-type browsers has been updated.

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wwPDB New Deposition and Annotation System

Please refer to wwPDB New Deposition and Annotation System at wwPDB site.

wwPDB New Deposition and Annotation System - FAQ

Please refer to wwPDB New Deposition and Annotation System-Frequently Asked Questions at wwPDB site.

News on 2015-10-2

New version of jV (4.4.4), fixed the bug involved in the polygon display in Windows, was released. http://pdbj.org/jv/

The wwPDB Symposium \

The wwPDB Symposium "Integrative Structural Biology with Hybrid Methods" will be held at Osaka University Hall on October 3, 2015 (more...)

Phased PDB Release Process ( wwPDB News )

Phased PDB Release Process (wwPDB News)

Data correspondences between the PDB and CSD archives now available ( wwPDB News )

Data correspondences between the PDB and CSD archives now available (wwPDB News)

confidentiality of deposition data - FAQ

Q) Is there any chance that the deposited information could leak out from the PDB before release? A) The deposited data is managed under strict security constraints during the annotation process. There is no need for concern regarding data leaking out. ...

PDBj Chemie

Searching The PDBj Chemie service provides additional insights to non-protein and non-nucleotide compounds found in PDB entries. These compounds can be searched using the PDBj Chemie Search service: PDBj Chemie Search service Here you can search via the ...

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