PDB: 4155 resultsInfo pagesStatus searchChemie searchBIRD

---

2PA8	X-Ray Crystal Structure of the D/L Subcomplex of the Sulfolobus Solfataricus RNA polymerase Descriptor: DNA-directed RNA polymerase subunit D, DNA-directed RNA polymerase subunit L, FE3-S4 CLUSTER, ... Authors: Hirata, A, Murakami, K.S. Deposit date: 2007-03-27 Release date: 2008-02-05 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.76 Å) Cite: The X-ray crystal structure of RNA polymerase from Archaea. Nature, 451, 2008
4QJV	The X-ray crystal structure of Rpo3/Rpo11 heterodimer of euryarchaeal RNA polymerase from Thermococcus kodakarensis Descriptor: DNA-directed RNA polymerase subunit D, DNA-directed RNA polymerase subunit L, PHOSPHATE ION Authors: Hirata, A, Murakami, K.S. Deposit date: 2014-06-05 Release date: 2014-10-08 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.601 Å) Cite: The X-ray crystal structure of the euryarchaeal RNA polymerase in an open-clamp configuration Nat Commun, 5, 2014
3HKZ	The X-ray crystal structure of RNA polymerase from Archaea Descriptor: DNA-directed RNA polymerase subunit 13, DNA-directed RNA polymerase subunit A', DNA-directed RNA polymerase subunit A'', ... Authors: Murakami, K.S. Deposit date: 2009-05-26 Release date: 2009-06-09 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (3.4 Å) Cite: The X-ray crystal structure of RNA polymerase from Archaea. Nature, 451, 2008
2PMZ	Archaeal RNA polymerase from Sulfolobus solfataricus Descriptor: DNA-directed RNA polymerase subunit A, DNA-directed RNA polymerase subunit A", DNA-directed RNA polymerase subunit B, ... Authors: Murakami, K.S. Deposit date: 2007-04-23 Release date: 2008-02-12 Last modified: 2017-10-18 Method: X-RAY DIFFRACTION (3.4 Å) Cite: The X-ray crystal structure of RNA polymerase from Archaea Nature, 451, 2008
7UWH	CryoEM Structure of E. coli Transcription-Coupled Ribonucleotide Excision Repair (TC-RER) complex bound to ribonucleotide substrate Descriptor: DNA (59-MER), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... Authors: Hao, Z.T, Grower, M, Bharati, B, Proshkin, S, Epshtein, V, Svetlov, V, Nudler, E, Shamovsky, I. Deposit date: 2022-05-03 Release date: 2023-05-31 Last modified: 2023-06-07 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: RNA polymerase drives ribonucleotide excision DNA repair in E. coli. Cell, 186, 2023
4KI2	Crystallographic analysis of an RNA-polymerase sigma-subunit fragment complexed with -10 promoter element ssDNA Descriptor: DNA (5'-D(*TP*GP*TP*AP*CP*AP*AP*TP*GP*GP*G)-3'), POTASSIUM ION, RNA polymerase sigma factor Authors: Feklistov, A, Darst, S.A. Deposit date: 2013-05-01 Release date: 2013-09-04 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (3.3 Å) Cite: Crystallographic analysis of an RNA polymerase sigma-subunit fragment complexed with -10 promoter element ssDNA: quadruplex formation as a possible tool for engineering crystal contacts in protein-ssDNA complexes. Acta Crystallogr.,Sect.F, 69, 2013
1EIK	Solution Structure of RNA Polymerase Subunit RPB5 from Methanobacterium Thermoautotrophicum Descriptor: RNA POLYMERASE SUBUNIT RPB5 Authors: Yee, A, Booth, V, Dharamsi, A, Engel, A, Edwards, A.M, Arrowsmith, C.H, Northeast Structural Genomics Consortium (NESG) Deposit date: 2000-02-25 Release date: 2000-06-21 Last modified: 2022-02-16 Method: SOLUTION NMR Cite: Solution structure of the RNA polymerase subunit RPB5 from Methanobacterium thermoautotrophicum. Proc.Natl.Acad.Sci.USA, 97, 2000
1EF4	SOLUTION STRUCTURE OF THE ESSENTIAL RNA POLYMERASE SUBUNIT RPB10 FROM METHANOBACTERIUM THERMOAUTOTROPHICUM Descriptor: DNA-DIRECTED RNA POLYMERASE, ZINC ION Authors: Mackereth, C.D, Arrowsmith, C.H, Edwards, A.M, Mcintosh, L.P, Northeast Structural Genomics Consortium (NESG) Deposit date: 2000-02-07 Release date: 2000-06-14 Last modified: 2022-02-16 Method: SOLUTION NMR Cite: Zinc-bundle structure of the essential RNA polymerase subunit RPB10 from Methanobacterium thermoautotrophicum. Proc.Natl.Acad.Sci.USA, 97, 2000
5IWD	HCMV DNA polymerase subunit UL44 complex with a small molecule Descriptor: 5-methylidene-3-(methylsulfanyl)-2-benzothiophen-4(5H)-one, DNA polymerase processivity factor Authors: Chen, H, Coen, D.M, Hogle, J.M, Filman, D.J. Deposit date: 2016-03-22 Release date: 2016-11-30 Last modified: 2019-12-11 Method: X-RAY DIFFRACTION (2.56 Å) Cite: A Small Covalent Allosteric Inhibitor of Human Cytomegalovirus DNA Polymerase Subunit Interactions. ACS Infect Dis, 3, 2017
4A93	RNA Polymerase II elongation complex containing a CPD Lesion Descriptor: 5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP*T*TTP*TP*TP*CP*C BRUP*GP*GP*TP*CP*AP*TP*T)-3', 5'-D(*TP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*TP)-3', 5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP*AP)-3', ... Authors: Walmacq, C, Cheung, A.C.M, Kireeva, M.L, Lubkowska, L, Ye, C, Gotte, D, Strathern, J.N, Carell, T, Cramer, P, Kashlev, M. Deposit date: 2011-11-23 Release date: 2012-03-21 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (3.4 Å) Cite: Mechanism of Translesion Transcription by RNA Polymerase II and its Role in Cellular Resistance to DNA Damage. Mol.Cell, 46, 2012
4QIW	Crystal structure of euryarchaeal RNA polymerase from Thermococcus kodakarensis Descriptor: DNA-directed RNA polymerase, DNA-directed RNA polymerase subunit A'', DNA-directed RNA polymerase subunit D, ... Authors: Jun, S.-H, Murakami, K.S. Deposit date: 2014-06-02 Release date: 2014-10-08 Last modified: 2014-11-26 Method: X-RAY DIFFRACTION (3.5 Å) Cite: The X-ray crystal structure of the euryarchaeal RNA polymerase in an open-clamp configuration. Nat Commun, 5, 2014
7UWE	CryoEM Structure of E. coli Transcription-Coupled Ribonucleotide Excision Repair (TC-RER) complex Descriptor: DNA (29-MER), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... Authors: Hao, Z.T, Grower, M, Bharati, B, Proshkin, S, Epshtein, V, Svetlov, V, Nudler, E, Shamovsky, I. Deposit date: 2022-05-03 Release date: 2023-05-31 Last modified: 2023-06-07 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: RNA polymerase drives ribonucleotide excision DNA repair in E. coli. Cell, 186, 2023
4KMU	X-ray crystal structure of the Escherichia coli RNA polymerase in complex with Rifampin Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Murakami, K.S. Deposit date: 2013-05-08 Release date: 2013-05-22 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (3.85 Å) Cite: X-ray Crystal Structures of the Escherichia coli RNA Polymerase in Complex with Benzoxazinorifamycins. J.Med.Chem., 56, 2013
4KN4	X-ray crystal structure of the Escherichia coli RNA polymerase in complex with Benzoxazinorifamycin-2b Descriptor: Benzoxazinorifamycin-2b, DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... Authors: Murakami, K.S. Deposit date: 2013-05-08 Release date: 2013-05-22 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (3.965 Å) Cite: X-ray Crystal Structures of the Escherichia coli RNA Polymerase in Complex with Benzoxazinorifamycins. J.Med.Chem., 56, 2013
4KN7	X-ray crystal structure of the Escherichia coli RNA polymerase in complex with Benzoxazinorifamycin-2c Descriptor: Benzoxazinorifamycin-2c, DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... Authors: Murakami, K.S. Deposit date: 2013-05-08 Release date: 2013-05-22 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (3.686 Å) Cite: X-ray Crystal Structures of the Escherichia coli RNA Polymerase in Complex with Benzoxazinorifamycins. J.Med.Chem., 56, 2013
5IXA	HCMV DNA polymerase processivity subunit UL44 at neutral pH and low salt Descriptor: DNA polymerase processivity factor Authors: Chen, H, Coen, D.M, Hogle, J.M, Filman, D.J. Deposit date: 2016-03-23 Release date: 2016-11-30 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.684 Å) Cite: A Small Covalent Allosteric Inhibitor of Human Cytomegalovirus DNA Polymerase Subunit Interactions. ACS Infect Dis, 3, 2017
2MAX	NMR structure of the RNA polymerase alpha subunit C-terminal domain from Helicobacter pylori Descriptor: DNA-directed RNA polymerase subunit alpha Authors: Borin, B.N, Krezel, A.M. Deposit date: 2013-07-21 Release date: 2014-03-12 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Helicobacter pylori RNA polymerase alpha-subunit C-terminal domain shows features unique to -proteobacteria and binds NikR/DNA complexes. Protein Sci., 23, 2014
1XPP	Crystal Structure of TA1416,DNA-directed RNA polymerase subunit L, from Thermoplasma acidophilum Descriptor: ACETIC ACID, DNA-directed RNA polymerase subunit L, FORMIC ACID, ... Authors: Kim, Y, Joachimiak, A, Evdokimova, E, Savchenko, A, Edwards, A, Midwest Center for Structural Genomics (MCSG) Deposit date: 2004-10-09 Release date: 2004-11-23 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Crystal structure of TA1416, DNA-directed RNA polymerase subunit L, from Thermoplasma acidophilum To be Published
1HQM	CRYSTAL STRUCTURE OF THERMUS AQUATICUS CORE RNA POLYMERASE-INCLUDES COMPLETE STRUCTURE WITH SIDE-CHAINS (EXCEPT FOR DISORDERED REGIONS)-FURTHER REFINED FROM ORIGINAL DEPOSITION-CONTAINS ADDITIONAL SEQUENCE INFORMATION Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Minakhin, L, Bhagat, S, Brunning, A, Campbell, E.A, Darst, S.A, Ebright, R.H, Severinov, K. Deposit date: 2000-12-18 Release date: 2001-02-07 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (3.3 Å) Cite: Bacterial RNA polymerase subunit omega and eukaryotic RNA polymerase subunit RPB6 are sequence, structural, and functional homologs and promote RNA polymerase assembly. Proc.Natl.Acad.Sci.USA, 98, 2001
4NOI	2.17 Angstrom Crystal Structure of DNA-directed RNA Polymerase Subunit Alpha from Campylobacter jejuni. Descriptor: CHLORIDE ION, DNA-directed RNA polymerase subunit alpha, IODIDE ION, ... Authors: Minasov, G, Shuvalova, L, Dubrovska, I, Winsor, J, Grimshaw, S, Kwon, K, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID) Deposit date: 2013-11-19 Release date: 2013-12-04 Last modified: 2017-11-22 Method: X-RAY DIFFRACTION (2.17 Å) Cite: 2.17 Angstrom Crystal Structure of DNA-directed RNA Polymerase Subunit Alpha from Campylobacter jejuni. TO BE PUBLISHED
1T6L	Crystal Structure of the Human Cytomegalovirus DNA Polymerase Subunit, UL44 Descriptor: DNA polymerase processivity factor Authors: Appleton, B.A, Loregian, A, Filman, D.J, Coen, D.M, Hogle, J.M. Deposit date: 2004-05-06 Release date: 2004-08-10 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.85 Å) Cite: The Cytomegalovirus DNA Polymerase Subunit UL44 Forms a C Clamp-Shaped Dimer. Mol.Cell, 15, 2004
5V8W	Crystal structure of human Integrator IntS9-IntS11 CTD complex Descriptor: Integrator complex subunit 11, Integrator complex subunit 9 Authors: Wu, Y, Tong, L. Deposit date: 2017-03-22 Release date: 2017-04-12 Last modified: 2020-01-01 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Molecular basis for the interaction between Integrator subunits IntS9 and IntS11 and its functional importance. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
8RBX	Structure of Integrator-PP2A bound to a paused RNA polymerase II-DSIF-NELF-nucleosome complex Descriptor: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit RPB11-a, DNA-directed RNA polymerase II subunit RPB3, ... Authors: Fianu, I, Ochmann, M, Walshe, J.L, Cramer, P. Deposit date: 2023-12-05 Release date: 2024-02-07 Last modified: 2024-04-10 Method: ELECTRON MICROSCOPY (4.1 Å) Cite: Structural basis of Integrator-dependent RNA polymerase II termination. Nature, 2024
6WOX	Thermus thermophilus RNA polymerase initially transcribing complex with 2'dCTP Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA (25-MER), DNA (5'-D(P*TP*GP*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*TP*GP*CP*AP*G)-3'), ... Authors: Shin, Y, Murakami, K.S. Deposit date: 2020-04-26 Release date: 2020-06-10 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (3.14 Å) Cite: The mechanism of the nucleo-sugar selection by multi-subunit RNA polymerases. Nat Commun, 12, 2021
6WOY	Thermus thermophilus RNA polymerase initially transcribing complex with 3'dCTP Descriptor: 3'-DEOXY-CYTIDINE-5'-TRIPHOSPHATE, DNA (25-MER), DNA (5'-D(P*TP*GP*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*TP*GP*CP*AP*G)-3'), ... Authors: Shin, Y, Murakami, K.S. Deposit date: 2020-04-26 Release date: 2020-06-10 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (3 Å) Cite: The mechanism of the nucleo-sugar selection by multi-subunit RNA polymerases. Nat Commun, 12, 2021

 

12345678910111213141516>