PDB: 72 resultsInfo pagesStatus searchChemie searchBIRD

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8I3W	BANAL-20-236 Spike trimer Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein Authors: Wang, X, Xu, G. Deposit date: 2023-01-18 Release date: 2024-01-24 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: The selective effect of fecal-oral transmission on the S proteins of bat SARS-CoV-2 related coronaviruses in favor of stability over infectivity To Be Published
6WQ0	Cryo-EM of the S. solfataricus rod-shaped virus, SSRV1 Descriptor: DNA (301-MER), Structural protein Authors: Wang, F, Baquero, D.P, Beltran, L.C, Prangishvili, D, Krupovic, M, Egelman, E.H. Deposit date: 2020-04-28 Release date: 2020-07-29 Last modified: 2021-10-06 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Structures of filamentous viruses infecting hyperthermophilic archaea explain DNA stabilization in extreme environments. Proc.Natl.Acad.Sci.USA, 117, 2020
2W4Y	Caulobacter bacteriophage 5 - virus-like particle Descriptor: ADENOSINE MONOPHOSPHATE, CALCIUM ION, CAULOBACTER 5 VIRUS-LIKE PARTICLE Authors: Plevka, P, Kazaks, A, Dishlers, A, Liljas, L, Tars, K. Deposit date: 2008-12-02 Release date: 2009-07-14 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.9 Å) Cite: The Structure of Bacteriophage Phicb5 Reveals a Role of the RNA Genome and Metal Ions in Particle Stability and Assembly. J.Mol.Biol., 391, 2009
2Q0B	Crystal Structure of FGF Receptor 2 (FGFR2) Kinase Domain Harboring the Pathogenic E565A Mutation Responsible for Pfeiffer Syndrome Descriptor: Fibroblast growth factor receptor 2, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, SULFATE ION Authors: Chen, H, Mohammadi, M. Deposit date: 2007-05-21 Release date: 2007-09-25 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.9 Å) Cite: A molecular brake in the kinase hinge region regulates the activity of receptor tyrosine kinases. Mol.Cell, 27, 2007
7KTR	Cryo-EM structure of the human SAGA coactivator complex (TRRAP, core) Descriptor: Ataxin-7, INOSITOL HEXAKISPHOSPHATE, Isoform 3 of Transcription factor SPT20 homolog, ... Authors: Herbst, D.A, Esbin, M.N, Nogales, E. Deposit date: 2020-11-24 Release date: 2021-11-10 Last modified: 2021-12-22 Method: ELECTRON MICROSCOPY (2.93 Å) Cite: Structure of the human SAGA coactivator complex. Nat.Struct.Mol.Biol., 28, 2021
8EU6	Acheta domesticus segmented densovirus high buoyancy fraction 1 (HB1) empty capsid structure Descriptor: Capsid protein Authors: Penzes, J.J, McKenna, R, Tijssen, P. Deposit date: 2022-10-18 Release date: 2022-11-09 Last modified: 2024-02-21 Method: ELECTRON MICROSCOPY (3 Å) Cite: Bipartite genome and structural organization of the parvovirus Acheta domesticus segmented densovirus. Nat Commun, 14, 2023
2PZR	Crystal Structure of FGF Receptor 2 (FGFR2) Kinase Domain Harboring the Pathogenic K641R Mutation Responsible for Pfeiffer Syndrome Descriptor: Fibroblast growth factor receptor 2, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, SULFATE ION Authors: Chen, H, Mohammadi, M. Deposit date: 2007-05-18 Release date: 2007-09-25 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (3 Å) Cite: A molecular brake in the kinase hinge region regulates the activity of receptor tyrosine kinases. Mol.Cell, 27, 2007
7VQ0	Cryo-EM structure of the SARS-CoV-2 spike protein (2-up RBD) bound to neutralizing nanobodies P86 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Maeda, R, Fujita, J, Konishi, Y, Kazuma, Y, Yamazaki, H, Anzai, I, Yamaguchi, K, Kasai, K, Nagata, K, Yamaoka, Y, Miyakawa, K, Ryo, A, Shirakawa, K, Makino, F, Matsuura, Y, Inoue, T, Imura, A, Namba, K, Takaori-Kondo, A. Deposit date: 2021-10-18 Release date: 2022-07-20 Method: ELECTRON MICROSCOPY (3.03 Å) Cite: A panel of nanobodies recognizing conserved hidden clefts of all SARS-CoV-2 spike variants including Omicron. Commun Biol, 5, 2022
8EU5	Acheta domesticus segmented densovirus high buoyancy fraction 2 empty capsid structure Descriptor: Capsid protein Authors: Penzes, J.J, McKenna, R, Tijssen, P. Deposit date: 2022-10-18 Release date: 2022-11-09 Last modified: 2023-06-14 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structural and molecular biology of Acheta domesticus segmented densovirus, the first parvovirus to harbor a bipartite genome To Be Published
8KEE	Cyanophage A-1(L) sheath-tube Descriptor: sheath, tube Authors: Yu, R.C, Li, Q, Zhou, C.Z. Deposit date: 2023-08-11 Release date: 2024-04-10 Method: ELECTRON MICROSCOPY (3.26 Å) Cite: Structure of the intact tail machine of Anabaena myophage A-1(L). Nat Commun, 15, 2024
8EU7	Acheta domesticus segmented densovirus VP-ORF1 virus-like particle Descriptor: Capsid protein Authors: Penzes, J.J, McKenna, R, Tijssen, P. Deposit date: 2022-10-18 Release date: 2022-11-09 Last modified: 2024-02-21 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Bipartite genome and structural organization of the parvovirus Acheta domesticus segmented densovirus. Nat Commun, 14, 2023
8KEF	Cyanophage A-1(L) neck/gp7-terminator Descriptor: Neck gp7, Terminator gp8 Authors: Yu, R.C, Li, Q, Zhou, C.Z. Deposit date: 2023-08-11 Release date: 2024-04-17 Method: ELECTRON MICROSCOPY (3.44 Å) Cite: Structure of the intact tail machine of Anabaena myophage A-1(L). Nat Commun, 15, 2024
8KEA	Cyanophage A-1(L) baseplate-initiators Descriptor: baseplate gp16, central spike, hub, ... Authors: Yu, R.C, Li, Q, Zhou, C.Z. Deposit date: 2023-08-11 Release date: 2024-04-10 Method: ELECTRON MICROSCOPY (3.44 Å) Cite: Structure of the intact tail machine of Anabaena myophage A-1(L). Nat Commun, 15, 2024
8HXJ	BANAL-20-52 Spike trimer Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein Authors: Wang, X, Xu, G. Deposit date: 2023-01-04 Release date: 2024-01-10 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: The selective effect of fecal-oral transmission on the S proteins of bat SARS-CoV-2 related coronaviruses in favor of stability over infectivity To Be Published
2W4Z	Caulobacter bacteriophage 5 Descriptor: ADENOSINE MONOPHOSPHATE, CALCIUM ION, CAULOBACTER BACTERIOPHAGE 5 Authors: Plevka, P, Kazaks, A, Dishlers, A, Liljas, L, Tars, K. Deposit date: 2008-12-02 Release date: 2009-07-14 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (3.6 Å) Cite: The Structure of Bacteriophage Phicb5 Reveals a Role of the RNA Genome and Metal Ions in Particle Stability and Assembly. J.Mol.Biol., 391, 2009
8KEG	Cyanophage A-1(L) neck/gp5-neck fiber Descriptor: Neck gp5, neck fiber gp82N Authors: Yu, R.C, Li, Q, Zhou, C.Z. Deposit date: 2023-08-11 Release date: 2024-04-17 Method: ELECTRON MICROSCOPY (3.66 Å) Cite: Structure of the intact tail machine of Anabaena myophage A-1(L). Nat Commun, 15, 2024
8KE9	The CBD domain of cyanophage A-1(L) short tail fiber Descriptor: Tail fiber protein Authors: Yu, R.C, Li, Q, Zhou, C.Z. Deposit date: 2023-08-11 Release date: 2024-04-10 Method: ELECTRON MICROSCOPY (3.76 Å) Cite: Structure of the intact tail machine of Anabaena myophage A-1(L). Nat Commun, 15, 2024
8HXK	BANAL-20-236 S1 in complex with R. Affinis ACE2 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme, ... Authors: Wang, X, Xu, G. Deposit date: 2023-01-04 Release date: 2024-01-10 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: The selective effect of fecal-oral transmission on the S proteins of bat SARS-CoV-2 related coronaviruses in favor of stability over infectivity To Be Published
8KEC	Cyanophage A-1(L) tail fiber Descriptor: Long tail fiber, short tail fiber Authors: Yu, R.C, Li, Q, Zhou, C.Z. Deposit date: 2023-08-11 Release date: 2024-04-10 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Structure of the intact tail machine of Anabaena myophage A-1(L). Nat Commun, 15, 2024
5KGF	Structural model of 53BP1 bound to a ubiquitylated and methylated nucleosome, at 4.5 A resolution Descriptor: DNA (145-MER), Histone H2A type 1, Histone H2B type 1-C/E/F/G/I, ... Authors: Wilson, M.D, Benlekbir, S, Sicheri, F, Rubinstein, J.L, Durocher, D. Deposit date: 2016-06-13 Release date: 2016-07-27 Last modified: 2020-01-15 Method: ELECTRON MICROSCOPY (4.54 Å) Cite: The structural basis of modified nucleosome recognition by 53BP1. Nature, 536, 2016
7KTS	Negative stain EM structure of the human SAGA coactivator complex (TRRAP, core, splicing module) Descriptor: Ataxin-7, Isoform 3 of Transcription factor SPT20 homolog, STAGA complex 65 subunit gamma, ... Authors: Herbst, D.A, Esbin, M.N, Nogales, E. Deposit date: 2020-11-24 Release date: 2021-11-10 Last modified: 2021-12-22 Method: ELECTRON MICROSCOPY (19.09 Å) Cite: Structure of the human SAGA coactivator complex. Nat.Struct.Mol.Biol., 28, 2021
2MJM	The solution NMR structure of the NLRC5 caspase recruitment domain (CARD) Descriptor: Protein NLRC5 Authors: Gutte, P.G.M, Zerbe, O. Deposit date: 2014-01-12 Release date: 2014-09-03 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Unusual structural features revealed by the solution NMR structure of the NLRC5 caspase recruitment domain. Biochemistry, 53, 2014

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