PDB: 8614 件ウェブページステータス検索Chemie searchBIRD

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8UIS	Structure of transcription complex Pol II-DSIF-NELF-TFIIS 分子名称: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit RPB3, DNA-directed RNA polymerase II subunit RPB7, ... 著者 Su, B.G, Vos, S.M. 登録日 2023-10-10 公開日 2024-03-20 最終更新日 2024-04-17 実験手法 ELECTRON MICROSCOPY (3.23 Å) 主引用文献 Distinct negative elongation factor conformations regulate RNA polymerase II promoter-proximal pausing. Mol.Cell, 84, 2024
8UHD	Structure of paused transcription complex Pol II-DSIF-NELF - post-translocated 分子名称: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit RPB3, DNA-directed RNA polymerase II subunit RPB7, ... 著者 Su, B.G, Vos, S.M. 登録日 2023-10-08 公開日 2024-03-20 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 Distinct negative elongation factor conformations regulate RNA polymerase II promoter-proximal pausing. Mol.Cell, 2024
8UI0	Structure of poised transcription complex Pol II-DSIF-NELF - pre-translocated 分子名称: DNA, DNA (38-MER), DNA-directed RNA polymerase II subunit E, ... 著者 Vos, S.M, Su, B.G. 登録日 2023-10-09 公開日 2024-03-20 実験手法 ELECTRON MICROSCOPY (2.7 Å) 主引用文献 Distinct negative elongation factor conformations regulate RNA polymerase II promoter-proximal pausing. Mol.Cell, 2024
8UHG	Structure of paused transcription complex Pol II-DSIF-NELF - poised post-translocated 分子名称: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit RPB11-a, DNA-directed RNA polymerase II subunit RPB3, ... 著者 Vos, S.M, Su, B.G. 登録日 2023-10-09 公開日 2024-03-20 最終更新日 2024-04-17 実験手法 ELECTRON MICROSCOPY (2.7 Å) 主引用文献 Distinct negative elongation factor conformations regulate RNA polymerase II promoter-proximal pausing. Mol.Cell, 84, 2024
5VKO	SPT6 tSH2-RPB1 1468-1500 pT1471, pS1493 分子名称: DNA-directed RNA polymerase II subunit RPB1, ISOPROPYL ALCOHOL, Transcription elongation factor SPT6 著者 Sdano, M.A, Whitby, F.G, Hill, C.P. 登録日 2017-04-21 公開日 2017-09-20 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 A novel SH2 recognition mechanism recruits Spt6 to the doubly phosphorylated RNA polymerase II linker at sites of transcription. Elife, 6, 2017
8POH	Influenza A/H7N9 polymerase symmetric dimer bound to the promoter (PA K289A/C489R) 分子名称: 51-mer vRNA loop (v51_mut_S), MAGNESIUM ION, Polymerase acidic protein, ... 著者 Arragain, B, Cusack, S. 登録日 2023-07-04 公開日 2024-02-21 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 The host RNA polymerase II C-terminal domain is the anchor for replication of the influenza virus genome. Nat Commun, 15, 2024
8PNQ	Influenza A/H7N9 polymerase in elongation state with continuous Pol II pS5 CTD peptide mimic bound in site 1A/2A 分子名称: 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridine, 51-mer vRNA loop (v51_mut_S), MAGNESIUM ION, ... 著者 Arragain, B, Cusack, S. 登録日 2023-06-30 公開日 2024-02-21 実験手法 ELECTRON MICROSCOPY (2.88 Å) 主引用文献 The host RNA polymerase II C-terminal domain is the anchor for replication of the influenza virus genome. Nat Commun, 15, 2024
8PNP	Influenza A/H7N9 polymerase in pre-initiation state with continuous Pol II pS5 CTD peptide mimic bound in site 1A/2A 分子名称: 51-mer vRNA loop (v51_mut_S), Polymerase acidic protein, Polymerase basic protein 2, ... 著者 Arragain, B, Cusack, S. 登録日 2023-06-30 公開日 2024-02-21 実験手法 ELECTRON MICROSCOPY (2.49 Å) 主引用文献 The host RNA polymerase II C-terminal domain is the anchor for replication of the influenza virus genome. Nat Commun, 15, 2024
6GYM	Structure of a yeast closed complex with distorted DNA (CCdist) 分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... 著者 Dienemann, C, Schwalb, B, Schilbach, S, Cramer, P. 登録日 2018-06-30 公開日 2018-12-05 最終更新日 2019-12-25 実験手法 ELECTRON MICROSCOPY (6.7 Å) 主引用文献 Promoter Distortion and Opening in the RNA Polymerase II Cleft. Mol. Cell, 73, 2019
6GYL	Structure of a yeast closed complex with distorted DNA (core CCdist) 分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... 著者 Dienemann, C, Schwalb, B, Schilbach, S, Cramer, P. 登録日 2018-06-30 公開日 2018-12-05 最終更新日 2019-12-11 実験手法 ELECTRON MICROSCOPY (4.8 Å) 主引用文献 Promoter Distortion and Opening in the RNA Polymerase II Cleft. Mol. Cell, 73, 2019
6GYK	Structure of a yeast closed complex (core CC1) 分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... 著者 Dienemann, C, Schwalb, B, Schilbach, S, Cramer, P. 登録日 2018-06-30 公開日 2018-12-05 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (5.1 Å) 主引用文献 Promoter Distortion and Opening in the RNA Polymerase II Cleft. Mol. Cell, 73, 2019
7MKA	Structure of EC+EC (leading EC-focused) 分子名称: DNA (40-MER), DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB3, ... 著者 Yang, C, Murakami, K. 登録日 2021-04-22 公開日 2022-04-27 最終更新日 2023-05-17 実験手法 ELECTRON MICROSCOPY (3.54 Å) 主引用文献 Structural visualization of de novo transcription initiation by Saccharomyces cerevisiae RNA polymerase II. Mol.Cell, 82, 2022
7MK9	Complex structure of trailing EC of EC+EC (trailing EC-focused) 分子名称: DNA (40-MER), DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB3, ... 著者 Yang, C, Murakami, K. 登録日 2021-04-22 公開日 2022-04-27 最終更新日 2023-05-17 実験手法 ELECTRON MICROSCOPY (3.54 Å) 主引用文献 Structural visualization of de novo transcription initiation by Saccharomyces cerevisiae RNA polymerase II. Mol.Cell, 82, 2022
7MEI	Composite structure of EC+EC 分子名称: DNA (74-MER), DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB3, ... 著者 Yang, C, Murakami, K. 登録日 2021-04-06 公開日 2022-03-02 実験手法 ELECTRON MICROSCOPY (3.54 Å) 主引用文献 Structural visualization of de novo transcription initiation by Saccharomyces cerevisiae RNA polymerase II. Mol.Cell, 82, 2022
7O4L	Yeast TFIIH in the expanded state within the pre-initiation complex 分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, DNA-directed RNA polymerase II subunit RPB1, ... 著者 Schilbach, S, Aibara, S, Dienemann, C, Grabbe, F, Cramer, P. 登録日 2021-04-06 公開日 2021-06-16 最終更新日 2021-08-04 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Structure of RNA polymerase II pre-initiation complex at 2.9 angstrom defines initial DNA opening. Cell, 184, 2021
7O4K	Yeast TFIIH in the contracted state within the pre-initiation complex 分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, DNA-directed RNA polymerase II subunit RPB1, ... 著者 Schilbach, S, Aibara, S, Dienemann, C, Grabbe, F, Cramer, P. 登録日 2021-04-06 公開日 2021-06-16 最終更新日 2021-08-04 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Structure of RNA polymerase II pre-initiation complex at 2.9 angstrom defines initial DNA opening. Cell, 184, 2021
1A1D	YEAST RNA POLYMERASE SUBUNIT RPB8, NMR, MINIMIZED AVERAGE STRUCTURE, ALPHA CARBONS ONLY 分子名称: RNA POLYMERASE 著者 Krapp, S, Kelly, G, Reischl, J, Weinzierl, R, Matthews, S. 登録日 1997-12-10 公開日 1999-03-02 最終更新日 2024-04-10 実験手法 SOLUTION NMR 主引用文献 Eukaryotic RNA polymerase subunit RPB8 is a new relative of the OB family. Nat.Struct.Biol., 5, 1998
3H3V	Yeast RNAP II containing poly(A)-signal sequence in the active site 分子名称: 5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP*GP*CP*TP*GP*CP*TP*TP*TP*AP*TP*TP*GP*CP*AP*TP*T)-3', 5'-D(*CP*AP*GP*CP*TP*AP*CP*TP*TP*GP*AP*GP*CP*T)-3', 5'-R(*UP*GP*CP*AP*UP*UP*UP*CP*GP*CP*AP*AP*UP*AP*AP*A)-3', ... 著者 Dengl, S, Cramer, P. 登録日 2009-04-17 公開日 2009-06-16 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (4 Å) 主引用文献 Torpedo Nuclease Rat1 Is Insufficient to Terminate RNA Polymerase II in Vitro J.Biol.Chem., 284, 2009
3J1N	Cryo-EM map of a yeast minimal preinitiation complex interacting with the Mediator Head module 分子名称: DNA-directed RNA polymerase II subunit RPABC1, DNA-directed RNA polymerase II subunit RPABC2, DNA-directed RNA polymerase II subunit RPABC3, ... 著者 Asturias, F.J, Imasaki, T. 登録日 2012-03-29 公開日 2013-03-06 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (16 Å) 主引用文献 Interaction of the mediator head module with RNA polymerase II. Structure, 20, 2012
3D9K	Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the Carboxy-Terminal Domain of RNA-Polymerase II 分子名称: CTD-PEPTIDE, RNA-binding protein 16, SULFATE ION 著者 Becker, R, Loll, B, Meinhart, A. 登録日 2008-05-27 公開日 2008-06-10 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Snapshots of the RNA Processing Factor SCAF8 Bound to Different Phosphorylated Forms of the Carboxyl-terminal Domain of RNA Polymerase II. J.Biol.Chem., 283, 2008
3D9I	Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the Carboxy-Terminal Domain of RNA-Polymerase II 分子名称: AMMONIUM ION, GLYCEROL, RNA-binding protein 16, ... 著者 Becker, R, Loll, B, Meinhart, A. 登録日 2008-05-27 公開日 2008-06-10 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.907 Å) 主引用文献 Snapshots of the RNA Processing Factor SCAF8 Bound to Different Phosphorylated Forms of the Carboxyl-terminal Domain of RNA Polymerase II. J.Biol.Chem., 283, 2008
3D9J	Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the Carboxy-Terminal Domain of RNA-Polymerase II 分子名称: AMMONIUM ION, GLYCEROL, RNA-binding protein 16, ... 著者 Becker, R, Loll, B, Meinhart, A. 登録日 2008-05-27 公開日 2008-06-10 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Snapshots of the RNA Processing Factor SCAF8 Bound to Different Phosphorylated Forms of the Carboxyl-terminal Domain of RNA Polymerase II. J.Biol.Chem., 283, 2008
3D9P	Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the Carboxy-Terminal Domain of RNA-Polymerase II 分子名称: CTD-PEPTIDE, RNA-binding protein 16, SULFATE ION 著者 Becker, R, Loll, B, Meinhart, A. 登録日 2008-05-27 公開日 2008-06-10 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Snapshots of the RNA Processing Factor SCAF8 Bound to Different Phosphorylated Forms of the Carboxyl-terminal Domain of RNA Polymerase II. J.Biol.Chem., 283, 2008
3D9O	Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the Carboxy-Terminal Domain of RNA-Polymerase II 分子名称: AMMONIUM ION, CTD-PEPTIDE, RNA-binding protein 16, ... 著者 Becker, R, Loll, B, Meinhart, A. 登録日 2008-05-27 公開日 2008-06-10 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Snapshots of the RNA Processing Factor SCAF8 Bound to Different Phosphorylated Forms of the Carboxyl-terminal Domain of RNA Polymerase II. J.Biol.Chem., 283, 2008
3D9L	Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the Carboxy-Terminal Domain of RNA-Polymerase II 分子名称: ACETATE ION, CTD-PEPTIDE, GLYCEROL, ... 著者 Becker, R, Loll, B, Meinhart, A. 登録日 2008-05-27 公開日 2008-06-10 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Snapshots of the RNA Processing Factor SCAF8 Bound to Different Phosphorylated Forms of the Carboxyl-terminal Domain of RNA Polymerase II. J.Biol.Chem., 283, 2008

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