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5BZV	Crystal structure of the RNA-binding domain of yeast Puf5p bound to SMX2 RNA Descriptor: RNA (5'-R(*UP*GP*UP*AP*CP*UP*AP*UP*A)-3'), Suppressor protein MPT5 Authors: Qiu, C, Hall, T.M.T. Deposit date: 2015-06-11 Release date: 2015-09-23 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.354 Å) Cite: RNA regulatory networks diversified through curvature of the PUF protein scaffold. Nat Commun, 6, 2015
5BZ5	Crystal structure of the RNA-binding domain of yeast Puf5p bound to AMN1 RNA Descriptor: RNA (5'-R(*UP*GP*UP*AP*AP*CP*UP*UP*UP*A)-3'), Suppressor protein MPT5 Authors: Qiu, C, Hall, T.M.T. Deposit date: 2015-06-11 Release date: 2015-09-23 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.8 Å) Cite: RNA regulatory networks diversified through curvature of the PUF protein scaffold. Nat Commun, 6, 2015
5BYM	Crystal structure of the RNA-binding domain of yeast Puf5p bound to SMX2 RNA Descriptor: RNA (5'-R(*UP*GP*UP*AP*CP*UP*AP*UP*A)-3'), Suppressor protein MPT5 Authors: Qiu, C, Hall, T.M.T. Deposit date: 2015-06-10 Release date: 2015-09-23 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.708 Å) Cite: RNA regulatory networks diversified through curvature of the PUF protein scaffold. Nat Commun, 6, 2015
5BZ1	Crystal structure of the RNA-binding domain of yeast Puf5p bound to MFA2 RNA Descriptor: RNA (5'-R(*UP*GP*UP*AP*UP*UP*UP*GP*UP*A)-3'), Suppressor protein MPT5 Authors: Qiu, C, Hall, T.M.T. Deposit date: 2015-06-11 Release date: 2015-09-23 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.15 Å) Cite: RNA regulatory networks diversified through curvature of the PUF protein scaffold. Nat Commun, 6, 2015
4P5J	Crystal structure of the tRNA-like structure from Turnip Yellow Mosaic Virus (TYMV), a tRNA mimicking RNA Descriptor: IRIDIUM HEXAMMINE ION, MAGNESIUM ION, SPERMINE, ... Authors: Colussi, T.M, Costantino, D.A, Hammond, J.A, Ruehle, G.M, Nix, J.C, Kieft, J.S. Deposit date: 2014-03-17 Release date: 2014-06-04 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.9912 Å) Cite: The structural basis of transfer RNA mimicry and conformational plasticity by a viral RNA. Nature, 511, 2014
8TVZ	RNA origami 3-helix tile Traptamer Descriptor: RNA (363-MER) Authors: McRae, E.K.S, Vallina, N.S, Andersen, E.S. Deposit date: 2023-08-18 Release date: 2024-04-03 Method: ELECTRON MICROSCOPY (5.94 Å) Cite: An RNA origami robot that traps and releases a fluorescent aptamer. Sci Adv, 10, 2024
2RPT	Structure of the CC mismatch from the thymidylate synthase binding site 1 hairpin and analysis of its interaction with paromomycin Descriptor: RNA (5'-R(*GP*GP*CP*CP*CP*GP*CP*CP*GP*AP*AP*AP*GP*GP*CP*CP*GP*GP*CP*C)-3') Authors: Tavares, T.J, Johnson, P.E. Deposit date: 2008-08-23 Release date: 2009-08-25 Last modified: 2022-03-16 Method: SOLUTION NMR Cite: Structure of the cytosine-cytosine mismatch in the thymidylate synthase mRNA binding site and analysis of its interaction with the aminoglycoside paromomycin Rna, 15, 2009
8PFK	RNA structure with 1-methylpseudoridine, C2 space group Descriptor: MAGNESIUM ION, RNA (12-mer) Authors: Spingler, B, McAuley, K, Nievergelt, P, Thorn, A. Deposit date: 2023-06-16 Release date: 2024-01-31 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (1.321 Å) Cite: RNA oligomers at atomic resolution containing 1-methylpseudouridine, an essential building block of mRNA vaccines. Chemmedchem, 19, 2024
2N3Q	NMR structure of the II-III-VI three-way junction from the VS ribozyme Descriptor: RNA (62-MER) Authors: Bonneau, E, Girard, N, Lemieux, S, Legault, P. Deposit date: 2015-06-09 Release date: 2015-07-15 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: The NMR structure of the II-III-VI three-way junction from the Neurospora VS ribozyme reveals a critical tertiary interaction and provides new insights into the global ribozyme structure. Rna, 21, 2015
2LPA	Mutant of the sub-genomic promoter from Brome Mosaic Virus Descriptor: RNA (5'-R(*GP*AP*GP*GP*AP*CP*AP*UP*AP*GP*UP*CP*UP*UP*C)-3') Authors: Skov, J. Deposit date: 2012-02-06 Release date: 2012-05-16 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: The subgenomic promoter of brome mosaic virus folds into a stem-loop structure capped by a pseudo-triloop that is structurally similar to the triloop of the genomic promoter. Rna, 18, 2012
2LP9	Pseudo-triloop from the sub-genomic promoter of Brome Mosaic Virus Descriptor: RNA (5'-R(*GP*AP*GP*GP*AP*CP*AP*UP*AP*GP*AP*UP*CP*UP*UP*C)-3') Authors: Skov, J. Deposit date: 2012-02-06 Release date: 2012-05-16 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: The subgenomic promoter of brome mosaic virus folds into a stem-loop structure capped by a pseudo-triloop that is structurally similar to the triloop of the genomic promoter. Rna, 18, 2012
2LPT	Molecular dynamics re-refinement of domain 5 of the Pylaiella littoralis group II intron Descriptor: RNA_(34-MER) Authors: Henriksen, N.M, Davis, D.R, Cheatham III, T.E. Deposit date: 2012-02-17 Release date: 2012-08-08 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Molecular dynamics re-refinement of two different small RNA loop structures using the original NMR data suggest a common structure. J.Biomol.Nmr, 53, 2012
1E95	Solution structure of the pseudoknot of SRV-1 RNA, involved in ribosomal frameshifting Descriptor: RNA (5'-(*GP*CP*GP*GP*CP*CP*AP*GP*CP*UP*CP* CP*AP*GP*GP*CP*CP*GP*CP*CP*AP*AP*AP*CP* AP*AP*UP*AP*UP*GP*GP*AP*GP*CP*AP*C)-3') Authors: Michiels, P.J.A, Versleyen, A, Pleij, C.W.A, Hilbers, C.W, Heus, H.A. Deposit date: 2000-10-09 Release date: 2001-08-23 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Solution Structure of the Pseudoknot of Srv-1 RNA, Involved in Ribosomal Frameshifting J.Mol.Biol., 310, 2001
4U38	RNA duplex containing UU mispair Descriptor: RNA (5'-R(*GP*GP*UP*GP*CP*UP*A)-3'), RNA (5'-R(*UP*AP*GP*CP*UP*CP*C)-3') Authors: Sheng, J, Larsen, A, Heuberger, B, Blain, J.C, Szostak, J.W. Deposit date: 2014-07-18 Release date: 2014-08-13 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Crystal Structure Studies of RNA Duplexes Containing s(2)U:A and s(2)U:U Base Pairs. J.Am.Chem.Soc., 136, 2014
4UYK	Crystal structure of a Signal Recognition Particle Alu domain in the elongation arrest conformation Descriptor: SIGNAL RECOGNITION PARTICLE 14 KDA PROTEIN, SIGNAL RECOGNITION PARTICLE 9 KDA PROTEIN, SRP RNA Authors: Bousset, L, Mary, C, Brooks, M.A, Scherrer, A, Strub, K, Cusack, S. Deposit date: 2014-09-01 Release date: 2014-11-05 Last modified: 2014-12-03 Method: X-RAY DIFFRACTION (3.22 Å) Cite: Crystal Structure of a Signal Recognition Particle Alu Domain in the Elongation Arrest Conformation. RNA, 20, 2014
5M64	RNA Polymerase I elongation complex with A49 tandem winged helix domain Descriptor: DNA-directed RNA polymerase I subunit RPA12, DNA-directed RNA polymerase I subunit RPA135, DNA-directed RNA polymerase I subunit RPA14, ... Authors: Tafur, L, Sadian, Y, Hoffmann, N.A, Jakobi, A.J, Wetzel, R, Hagen, W.J.H, Sachse, C, Muller, C.W. Deposit date: 2016-10-24 Release date: 2016-12-21 Last modified: 2019-12-11 Method: ELECTRON MICROSCOPY (4.6 Å) Cite: Molecular Structures of Transcribing RNA Polymerase I. Mol. Cell, 64, 2016
5M5Y	RNA Polymerase I elongation complex 2 Descriptor: DNA-directed RNA polymerase I subunit RPA12, DNA-directed RNA polymerase I subunit RPA135, DNA-directed RNA polymerase I subunit RPA14, ... Authors: Tafur, L, Sadian, Y, Hoffmann, N.A, Jakobi, A.J, Wetzel, R, Hagen, W.J.H, Sachse, C, Muller, C.W. Deposit date: 2016-10-23 Release date: 2016-12-21 Last modified: 2019-12-11 Method: ELECTRON MICROSCOPY (4 Å) Cite: Molecular Structures of Transcribing RNA Polymerase I. Mol. Cell, 64, 2016
5M5X	RNA Polymerase I elongation complex 1 Descriptor: DNA-directed RNA polymerase I subunit RPA12, DNA-directed RNA polymerase I subunit RPA135, DNA-directed RNA polymerase I subunit RPA14, ... Authors: Tafur, L, Sadian, Y, Hoffmann, N.A, Jakobi, A.J, Wetzel, R, Hagen, W.J.H, Sachse, C, Muller, C.W. Deposit date: 2016-10-23 Release date: 2016-12-21 Last modified: 2019-12-11 Method: ELECTRON MICROSCOPY (4 Å) Cite: Molecular Structures of Transcribing RNA Polymerase I. Mol. Cell, 64, 2016
8JH2	RNA polymerase II elongation complex bound with Elf1, Spt4/5 and foreign DNA, stalled at SHL(-1) of the nucleosome Descriptor: DNA (218-MER), DNA (40-MER), DNA-directed RNA polymerase subunit, ... Authors: Akatsu, M, Fujita, R, Ogasawara, M, Ehara, H, Kujirai, T, Takizawa, Y, Sekine, S, Kurumizaka, H. Deposit date: 2023-05-22 Release date: 2023-11-29 Last modified: 2023-12-20 Method: ELECTRON MICROSCOPY (5.7 Å) Cite: Cryo-EM structures of RNA polymerase II-nucleosome complexes rewrapping transcribed DNA. J.Biol.Chem., 299, 2023
8JH4	RNA polymerase II elongation complex containing 60 bp upstream DNA loop, stalled at SHL(-1) of the nucleosome Descriptor: DNA (198-MER), DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, ... Authors: Akatsu, M, Fujita, R, Ogasawara, M, Ehara, H, Kujirai, T, Takizawa, Y, Sekine, S, Kurumizaka, H. Deposit date: 2023-05-22 Release date: 2023-11-29 Last modified: 2023-12-20 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Cryo-EM structures of RNA polymerase II-nucleosome complexes rewrapping transcribed DNA. J.Biol.Chem., 299, 2023
8JH3	RNA polymerase II elongation complex containing 40 bp upstream DNA loop, stalled at SHL(-1) of the nucleosome Descriptor: DNA (198-MER), DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, ... Authors: Akatsu, M, Fujita, R, Ogasawara, M, Ehara, H, Kujirai, T, Takizawa, Y, Sekine, S, Kurumizaka, H. Deposit date: 2023-05-22 Release date: 2023-11-29 Last modified: 2023-12-20 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Cryo-EM structures of RNA polymerase II-nucleosome complexes rewrapping transcribed DNA. J.Biol.Chem., 299, 2023
5OOQ	Structure of the Mtr4 Nop53 Complex Descriptor: ATP-dependent RNA helicase DOB1, Ribosome biogenesis protein NOP53, SULFATE ION Authors: Falk, S, Basquin, J, Conti, E. Deposit date: 2017-08-08 Release date: 2017-09-20 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Structural insights into the interaction of the nuclear exosome helicase Mtr4 with the preribosomal protein Nop53. RNA, 23, 2017
6F41	RNA Polymerase III initially transcribing complex Descriptor: DNA-directed RNA polymerase III subunit RPC1, DNA-directed RNA polymerase III subunit RPC10, DNA-directed RNA polymerase III subunit RPC2, ... Authors: Vorlaender, M.K, Khatter, H, Wetzel, R, Hagen, W.J.H, Mueller, C.W. Deposit date: 2017-11-29 Release date: 2018-01-17 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (4.3 Å) Cite: Molecular mechanism of promoter opening by RNA polymerase III. Nature, 553, 2018
7DU2	RNA polymerase III EC complex in post-translocation state Descriptor: DNA (5'-D(P*GP*TP*CP*TP*GP*AP*TP*CP*TP*CP*GP*GP*AP*A)-3'), DNA (5'-D(P*TP*TP*CP*CP*GP*AP*GP*AP*TP*CP*AP*GP*AP*CP*GP*AP*GP*AP*T)-3'), DNA-directed RNA polymerase III subunit RPC1, ... Authors: Li, L, Yu, Z, Zhao, D, Ren, Y, Hou, H, Xu, Y. Deposit date: 2021-01-07 Release date: 2021-03-17 Last modified: 2024-03-27 Method: ELECTRON MICROSCOPY (3.35 Å) Cite: Structure of human RNA polymerase III elongation complex. Cell Res., 31, 2021
1BJ2	RNA LOOP-LOOP COMPLEX: THE COLE1 INVERTED LOOP SEQUENCE, NMR, 8 STRUCTURES Descriptor: RNA (5'-R(*GP*CP*AP*CP*CP*GP*AP*AP*CP*CP*AP*UP*CP*CP*GP*GP*UP*GP*C)-3'), RNA (5'-R(*GP*GP*CP*AP*AP*CP*GP*GP*AP*UP*GP*GP*UP*UP*CP*GP*UP*UP*GP*CP*C)-3') Authors: Lee, A.J, Crothers, D.M. Deposit date: 1998-07-02 Release date: 1999-02-02 Last modified: 2022-02-16 Method: SOLUTION NMR Cite: The solution structure of an RNA loop-loop complex: the ColE1 inverted loop sequence. Structure, 6, 1998

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