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4NL3	Crystal Structure of Listeria monocytogenes Hfq in complex with U6 RNA Descriptor: 5'-R(*UP*UP*UP*UP*UP*U)-3', Protein hfq Authors: Kovach, A.R, Brennan, R.G. Deposit date: 2013-11-13 Release date: 2014-09-10 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Recognition of U-rich RNA by Hfq from the Gram-positive pathogen Listeria monocytogenes. Rna, 20, 2014
3PF4	Crystal structure of Bs-CspB in complex with r(GUCUUUA) Descriptor: Cold shock protein cspB, MAGNESIUM ION, SODIUM ION, ... Authors: Sachs, R, Max, K.E.A, Heinemann, U. Deposit date: 2010-10-27 Release date: 2011-09-21 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.38 Å) Cite: RNA single strands bind to a conserved surface of the major cold shock protein in crystals and solution. Rna, 18, 2012
3PF5	Crystal structure of Bs-CspB in complex with rU6 Descriptor: Cold shock protein cspB, MAGNESIUM ION, hexaribouracil (rU6) Authors: Sachs, R, Max, K.E.A, Heinemann, U. Deposit date: 2010-10-27 Release date: 2011-09-21 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.68 Å) Cite: RNA single strands bind to a conserved surface of the major cold shock protein in crystals and solution. Rna, 18, 2012
5YDT	Remodeled Utp30 in 90S pre-ribosome (Mtr4-depleted, Enp1-TAP) Descriptor: 5' ETS RNA, Ribosome biogenesis protein UTP30, Saccharomyces cerevisiae strain ALI 308 18S ribosomal RNA gene, ... Authors: Ye, K, Zhu, X, Hu, J. Deposit date: 2017-09-14 Release date: 2017-11-01 Last modified: 2024-03-27 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: Structure and RNA recognition of ribosome assembly factor Utp30. RNA, 23, 2017
1ZDJ	STRUCTURE OF BACTERIOPHAGE COAT PROTEIN-LOOP RNA COMPLEX Descriptor: PROTEIN (MS2 PROTEIN CAPSID), RNA (5'-R(*GP*GP*AP*UP*CP*AP*CP*C)-3') Authors: Grahn, E, Stonehouse, N, Valegard, K, Vandenworm, S, Liljas, L. Deposit date: 1997-12-18 Release date: 1998-07-08 Last modified: 2023-04-19 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Crystallographic studies of RNA hairpins in complexes with recombinant MS2 capsids: implications for binding requirements. RNA, 5, 1999
1ZDK	STRUCTURE OF BACTERIOPHAGE COAT PROTEIN-LOOP RNA COMPLEX Descriptor: PROTEIN (MS2 PROTEIN CAPSID), RNA (5'-R(P*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*CP*AP*CP*CP*CP*AP*UP*GP*U)-3') Authors: Grahn, E, Stonehouse, N.J, Valegard, K, Vandenworm, S, Liljas, L. Deposit date: 1998-12-04 Release date: 1998-12-07 Last modified: 2023-04-19 Method: X-RAY DIFFRACTION (2.86 Å) Cite: Crystallographic studies of RNA hairpins in complexes with recombinant MS2 capsids: implications for binding requirements. RNA, 5, 1999
2Y95	Solution structure of AUCG tetraloop hairpin found in human Xist RNA A-repeats essential for X-inactivation Descriptor: 5'-R(*GP*GP*CP*GP*CP*AP*UP*CP*GP*GP*CP*GP*CP*C)-3' Authors: Duszczyk, M.M, Sattler, M. Deposit date: 2011-02-11 Release date: 2011-10-26 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: The Xist RNA A-Repeat Comprises a Novel Aucg Tetraloop Fold and a Platform for Multimerization. RNA, 17, 2011
3AJF	Structural insigths into dsRNA binding and RNA silencing suppression by NS3 protein of rice hoja blanca tenuivirus Descriptor: Non-structural protein 3, SULFATE ION Authors: Yuan, Y.A. Deposit date: 2010-06-05 Release date: 2011-04-20 Last modified: 2014-01-29 Method: X-RAY DIFFRACTION (2 Å) Cite: Structural implications into dsRNA binding and RNA silencing suppression by NS3 protein of Rice Hoja Blanca Tenuivirus Rna, 17, 2011
7L0Z	Spinach variant bound to DFHBI-1T Descriptor: (5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2-methyl-3-(2,2,2-trifluoroethyl)-3,5-dihydro-4H-imidazol-4-one, MAGNESIUM ION, PHOSPHATE ION, ... Authors: Truong, L, Trachman, R.J, Ferre-D'Amare, A.R. Deposit date: 2020-12-13 Release date: 2021-05-26 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Fluorogenic aptamers resolve the flexibility of RNA junctions using orientation-dependent FRET. Rna, 27, 2021
8AMJ	Crystal structure of unliganded AUGUGGCAU duplex Descriptor: ACETATE ION, RNA (5'-R(*AP*UP*GP*UP*GP*GP*CP*AP*U)-3'), SULFATE ION Authors: Kiliszek, A, Rypniewski, W. Deposit date: 2022-08-03 Release date: 2022-11-23 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.02 Å) Cite: Structure and thermodynamics of a UGG motif interacting with Ba2+ and other metal ions: accommodating changes in the RNA structure and the presence of a G(syn)-G(syn) pair. Rna, 29, 2022
8AMI	Crystal structure of AUGUGGCAU duplex with barium ions (model 2) Descriptor: BARIUM ION, RNA (5'-R(*AP*UP*GP*UP*GP*GP*CP*AP*U)-3'), SODIUM ION Authors: Kiliszek, A, Rypniewski, W. Deposit date: 2022-08-03 Release date: 2022-11-23 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.79 Å) Cite: Structure and thermodynamics of a UGG motif interacting with Ba2+ and other metal ions: accommodating changes in the RNA structure and the presence of a G(syn)-G(syn) pair. Rna, 29, 2022
8AMM	Crystal structure of AUGUGGCAU duplex with cesium ions Descriptor: CESIUM ION, RNA (5'-R(*AP*UP*GP*UP*GP*GP*CP*AP*U)-3') Authors: Kiliszek, A, Rypniewski, W. Deposit date: 2022-08-03 Release date: 2022-11-23 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.86 Å) Cite: Structure and thermodynamics of a UGG motif interacting with Ba2+ and other metal ions: accommodating changes in the RNA structure and the presence of a G(syn)-G(syn) pair. Rna, 29, 2022
8AML	Crystal structure of AUGUGGCAU duplex with cadmium ions Descriptor: CADMIUM ION, RNA (5'-R(*AP*UP*GP*UP*GP*GP*CP*AP*U)-3') Authors: Kiliszek, A, Rypniewski, W. Deposit date: 2022-08-03 Release date: 2022-11-23 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.75 Å) Cite: Structure and thermodynamics of a UGG motif interacting with Ba2+ and other metal ions: accommodating changes in the RNA structure and the presence of a G(syn)-G(syn) pair. Rna, 29, 2022
1WKS	Solution structure of an RNA stem-loop derived from the 3' conserved region of eel LINE UnaL2 Descriptor: 5'-R(*GP*GP*CP*UP*UP*UP*GP*GP*AP*UP*AP*AP*AP*AP*GP*CP*C)-3' Authors: Baba, S, Kajikawa, M, Okada, N, Kawai, G. Deposit date: 2004-06-04 Release date: 2004-06-22 Last modified: 2022-03-02 Method: SOLUTION NMR Cite: Solution structure of an RNA stem-loop derived from the 3' conserved region of eel LINE UnaL2 Rna, 10, 2004
1U1Y	Crystal structure of a complex between WT bacteriophage MS2 coat protein and an F5 aptamer RNA stemloop with 2aminopurine substituted at the-10 position Descriptor: 5'-R(*CP*CP*GP*GP*(2PR)P*GP*GP*AP*UP*CP*AP*CP*CP*AP*CP*GP*G)-3', Coat protein Authors: Horn, W.T, Convery, M.A, Stonehouse, N.J, Adams, C.J, Liljas, L, Phillips, S.E, Stockley, P.G. Deposit date: 2004-07-16 Release date: 2004-12-07 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.85 Å) Cite: The crystal structure of a high affinity RNA stem-loop complexed with the bacteriophage MS2 capsid: further challenges in the modeling of ligand-RNA interactions. Rna, 10, 2004
1Q75	Solution structure of the dyskeratosis congenita mutant P2b hairpin from human telomerase RNA Descriptor: DKC mutant P2b telomerase RNA Authors: Theimer, C.A, Finger, L.D, Feigon, J. Deposit date: 2003-08-15 Release date: 2003-12-23 Last modified: 2022-03-02 Method: SOLUTION NMR Cite: YNMG tetraloop formation by a dyskeratosis congenita mutation in human telomerase RNA. Rna, 9, 2003
8AMG	Crystal structure of AUGUGGCAU duplex with barium ions (model 1) Descriptor: BARIUM ION, RNA (5'-R(*AP*UP*GP*UP*GP*GP*CP*AP*U)-3') Authors: Kiliszek, A, Rypniewski, W. Deposit date: 2022-08-03 Release date: 2022-11-23 Last modified: 2023-02-01 Method: X-RAY DIFFRACTION (2.26 Å) Cite: Structure and thermodynamics of a UGG motif interacting with Ba2+ and other metal ions: accommodating changes in the RNA structure and the presence of a G(syn)-G(syn) pair. Rna, 29, 2022
4PN0	Structure of S. pombe Pct1 RNA triphosphatase Descriptor: mRNA-capping enzyme subunit beta Authors: Lima, C.D, Doamekpor, S.K. Deposit date: 2014-05-22 Release date: 2014-11-12 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Fission yeast RNA triphosphatase reads an Spt5 CTD code. Rna, 21, 2015
4PN1	Structure of S. pombe Pct1 RNA triphosphatase in complex with the Spt5 CTD Descriptor: 1,2-ETHANEDIOL, FORMIC ACID, Synthetic peptide, ... Authors: Lima, C.D, Doamekpor, S.K. Deposit date: 2014-05-22 Release date: 2014-11-12 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.803 Å) Cite: Fission yeast RNA triphosphatase reads an Spt5 CTD code. Rna, 21, 2015
2AU4	Class I GTP aptamer Descriptor: Class I RNA aptamer to GTP, GUANOSINE-5'-TRIPHOSPHATE Authors: Carothers, J.M, Davis, J.H, Chou, J.J, Szostak, J.W. Deposit date: 2005-08-26 Release date: 2006-03-28 Last modified: 2022-03-09 Method: SOLUTION NMR Cite: Solution structure of an informationally complex high-affinity RNA aptamer to GTP. Rna, 12, 2006
1RAW	ATP BINDING RNA APTAMER IN COMPLEX WITH AMP, NMR, 10 STRUCTURES Descriptor: ADENOSINE MONOPHOSPHATE, RNA APTAMER Authors: Dieckmann, T, Feigon, J. Deposit date: 1996-07-17 Release date: 1997-01-27 Last modified: 2022-03-02 Method: SOLUTION NMR Cite: Solution Structure of an ATP-Binding RNA Aptamer Reveals a Novel Fold RNA, 2, 1996
2KH9	Solution structure of yeast Prp24-RRM2 bound to a fragment of U6 RNA Descriptor: 5'-R(*AP*GP*AP*GP*AP*U)-3', U4/U6 snRNA-associated-splicing factor PRP24 Authors: Martin-Tumasz, S.A, Butcher, S.E. Deposit date: 2009-03-27 Release date: 2010-03-09 Last modified: 2022-03-16 Method: SOLUTION NMR Cite: Structure and functional implications of a complex containing a segment of U6 RNA bound by a domain of Prp24. Rna, 16, 2010
2F88	Solution NMR structure of domain 5 from the Pyaiella littoralis (PL) group II intron Descriptor: D5-PL RNA RIBOZYME DOMAIN Authors: Dayie, K.T. Deposit date: 2005-12-02 Release date: 2006-02-28 Last modified: 2022-03-09 Method: SOLUTION NMR Cite: Structure of a self-splicing group II intron catalytic effector domain 5: parallels with spliceosomal U6 RNA Rna, 12, 2006
2FYH	Solution structure of the 2'-5' RNA ligase-like protein from Pyrococcus furiosus Descriptor: putative integral membrane transport protein Authors: Okada, K, Matsuda, T, Sakamoto, T, Muto, Y, Yokoyama, S, Kanai, A, Kawai, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-02-08 Release date: 2007-02-20 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Characterization of a heat-stable enzyme possessing GTP-dependent RNA ligase activity from a hyperthermophilic archaeon, Pyrococcus furiosus Rna, 15, 2009
2M21	Solution structure of the Tetrahymena telomerase RNA stem IV terminal loop Descriptor: 5'-R(*GP*GP*CP*GP*AP*UP*AP*CP*AP*CP*UP*AP*UP*UP*UP*AP*UP*CP*GP*CP*C)-3' Authors: Cash, D.D, Richards, R.J, Wu, H, Trantirek, L, O'Connor, C.M, Feigon, J, Collins, K. Deposit date: 2012-12-11 Release date: 2013-03-20 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Structural study of elements of Tetrahymena telomerase RNA stem-loop IV domain important for function. Rna, 12, 2006

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