1ZDK

STRUCTURE OF BACTERIOPHAGE COAT PROTEIN-LOOP RNA COMPLEX

Summary for 1ZDK

DescriptorRNA (5'-R(P*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*CP*AP*CP*CP*CP*AP*UP*GP*U)-3'), PROTEIN (MS2 PROTEIN CAPSID) (3 entities in total)
Functional Keywordscomplex (coat protein-rna), coat protein, rna-binding, viral protein capsid, rna fragment, icosahedral virus, virus-rna complex, virus/rna
Biological sourceEnterobacterio phage MS2
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Cellular locationVirion (Potential) P03612
Total number of polymer chains5
Total molecular weight53338.74
Authors
Grahn, E.,Stonehouse, N.J.,Valegard, K.,Vandenworm, S.,Liljas, L. (deposition date: 1998-12-04, release date: 1998-12-07, Last modification date: 2011-07-13)
Primary citation
Grahn, E.,Stonehouse, N.J.,Murray, J.B.,van den Worm, S.,Valegard, K.,Fridborg, K.,Stockley, P.G.,Liljas, L.
Crystallographic studies of RNA hairpins in complexes with recombinant MS2 capsids: implications for binding requirements.
RNA, 5:131-138, 1999
PubMed: 9917072 (PDB entries with the same primary citation)
DOI: 10.1017/S1355838299981645
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (2.86 Å)
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Structure validation

ClashscoreRamachandran outliersSidechain outliersRNA backbone141.0%8.2%0.46MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 1zdk
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Molmil generated image of 1zdk
rotated about x axis by 90°
Molmil generated image of 1zdk
rotated about y axis by 90°

More Biological unit images

Molmil generated image of 1zdk
no rotation
Molmil generated image of 1zdk
rotated about x axis by 90°
Molmil generated image of 1zdk
rotated about y axis by 90°
(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (1zdk.pdb1.gz [4.5 MB])