1ZDJ

STRUCTURE OF BACTERIOPHAGE COAT PROTEIN-LOOP RNA COMPLEX

Summary for 1ZDJ

DescriptorRNA (5'-R(*GP*GP*AP*UP*CP*AP*CP*C)-3'), PROTEIN (MS2 PROTEIN CAPSID) (3 entities in total)
Functional Keywordscoat protein-rna complex, coat protein, rna-binding, viral protein capsid, rna fragment, icosahedral virus, virus-rna complex, virus/rna
Biological sourceEnterobacterio phage MS2
Cellular locationVirion (Potential) P03612
Total number of polymer chains5
Total molecular weight46266.55
Authors
Grahn, E.,Stonehouse, N.,Valegard, K.,Vandenworm, S.,Liljas, L. (deposition date: 1997-12-18, release date: 1998-07-08, Last modification date: 2011-07-13)
Primary citation
Grahn, E.,Stonehouse, N.J.,Murray, J.B.,van den Worm, S.,Valegard, K.,Fridborg, K.,Stockley, P.G.,Liljas, L.
Crystallographic studies of RNA hairpins in complexes with recombinant MS2 capsids: implications for binding requirements.
RNA, 5:131-138, 1999
PubMed: 9917072 (PDB entries with the same primary citation)
DOI: 10.1017/S1355838299981645
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (2.9 Å)
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Structure validation

ClashscoreRamachandran outliersSidechain outliersRNA backbone71.0%6.6%0.41MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 1zdj
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Molmil generated image of 1zdj
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Molmil generated image of 1zdj
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More Biological unit images

Molmil generated image of 1zdj
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Molmil generated image of 1zdj
rotated about x axis by 90°
Molmil generated image of 1zdj
rotated about y axis by 90°
(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (1zdj.pdb1.gz [3.98 MB])