PDB: 30506 resultsInfo pagesStatus searchChemie searchBIRD

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1ZSE	RNA stemloop from bacteriophage Qbeta complexed with an N87S mutant MS2 Capsid Descriptor: Coat protein, RNA HAIRPIN Authors: Horn, W.T, Tars, K, Grahn, E, Helgstrand, C, Baron, A.J, Lago, H, Adams, C.J, Peabody, D.S, Phillips, S.E.V, Stonehouse, N.J, Liljas, L, Stockley, P.G. Deposit date: 2005-05-24 Release date: 2006-05-09 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (3 Å) Cite: Structural Basis of RNA Binding Discrimination between Bacteriophages Qbeta and MS2 Structure, 14, 2006
280D	THE STRUCTURE OF AN RNA DODECAMER SHOWS HOW TANDEM U-U BASE PAIRS INCREASE THE RANGE OF STABLE RNA STRUCTURES AND THE DIVERSITY OF RECOGNITION SITES Descriptor: RNA (5'-R(*GP*GP*CP*GP*CP*UP*UP*GP*CP*GP*UP*C)-3') Authors: Lietzke, S.E, Barnes, C.L, Kundrot, C.E. Deposit date: 1996-08-22 Release date: 1996-09-30 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.4 Å) Cite: The structure of an RNA dodecamer shows how tandem U-U base pairs increase the range of stable RNA structures and the diversity of recognition sites. Structure, 4, 1996
7UJ1	Crystal structure of PSF-RNA complex Descriptor: RNA (30-MER), Splicing factor, proline- and glutamine-rich Authors: Sachpatzidis, A, Wang, J, Konigsberg, W.H. Deposit date: 2022-03-30 Release date: 2022-09-28 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (3.5 Å) Cite: Insight into the Tumor Suppression Mechanism from the Structure of Human Polypyrimidine Splicing Factor (PSF/SFPQ) Complexed with a 30mer RNA from Murine Virus-like 30S Transcript-1. Biochemistry, 61, 2022
4OHY	C. Elegans Clp1 bound to ssRNA dinucleotide GC, AMP-PNP, and Mg2+(inhibited substrate bound state) Descriptor: MAGNESIUM ION, NONAETHYLENE GLYCOL, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ... Authors: Dikfidan, A, Loll, B, Zeymer, C, Clausen, T, Meinhart, A. Deposit date: 2014-01-18 Release date: 2014-05-14 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2 Å) Cite: RNA specificity and regulation of catalysis in the eukaryotic polynucleotide kinase clp1. Mol.Cell, 54, 2014
4OI0	bound to ssRNA dinucleotide GC, ADP, AlF4-, and Mg2+(transition state, data set I) Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, NONAETHYLENE GLYCOL, ... Authors: Dikfidan, A, Loll, B, Zeymer, C, Clausen, T, Meinhart, A. Deposit date: 2014-01-18 Release date: 2014-05-14 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.2 Å) Cite: RNA specificity and regulation of catalysis in the eukaryotic polynucleotide kinase clp1. Mol.Cell, 54, 2014
7VRL	Solution structure of Rbfox RRM bound to a non-cognate RNA Descriptor: RNA (5'-R(*UP*GP*CP*AP*UP*AP*U)-3'), RNA binding protein fox-1 homolog 1 Authors: Yang, F, Varani, G. Deposit date: 2021-10-23 Release date: 2022-10-26 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Two distinct binding modes provide the RNA-binding protein RbFox with extraordinary sequence specificity. Nat Commun, 14, 2023
4OHZ	bound to ssRNA tetranucleotide GAAA, ADP, and Mg2+ Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, NONAETHYLENE GLYCOL, ... Authors: Dikfidan, A, Loll, B, Zeymer, C, Clausen, T, Meinhart, A. Deposit date: 2014-01-18 Release date: 2014-05-14 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.4 Å) Cite: RNA specificity and regulation of catalysis in the eukaryotic polynucleotide kinase clp1. Mol.Cell, 54, 2014
8SKQ	RNA oligonucleotide containing an alpha-(L)-threofuranosyl nucleic acid (TNA) Descriptor: TNA-containing RNA oligonucleotide Authors: Harp, J.M, Egli, M. Deposit date: 2023-04-20 Release date: 2024-02-14 Method: X-RAY DIFFRACTION (1.35 Å) Cite: Shorter Is Better: The alpha-(l)-Threofuranosyl Nucleic Acid Modification Improves Stability, Potency, Safety, and Ago2 Binding and Mitigates Off-Target Effects of Small Interfering RNAs. J.Am.Chem.Soc., 145, 2023
4OI1	Clp1 bound to ssRNA dinucleotide GC, ADP, AlF4-, and Mg2+(transition state, data set II) Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, NONAETHYLENE GLYCOL, ... Authors: Dikfidan, A, Loll, B, Zeymer, C, Clausen, T, Meinhart, A. Deposit date: 2014-01-18 Release date: 2014-05-14 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.3 Å) Cite: RNA specificity and regulation of catalysis in the eukaryotic polynucleotide kinase clp1. Mol.Cell, 54, 2014
464D	DISORDER AND TWIN REFINEMENT OF RNA HEPTAMER DOUBLE HELIX Descriptor: RNA (5'-R(*GP*GP*GP*GP*CP*(IU)P*A)-3'), RNA (5'-R(*UP*AP*GP*CP*UP*CP*C)-3'), SODIUM ION, ... Authors: Mueller, U, Muller, Y.A, Herbst-Irmer, R, Sprinzl, M, Heinemann, U. Deposit date: 1999-04-14 Release date: 1999-08-16 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.23 Å) Cite: Disorder and twin refinement of RNA heptamer double helices. Acta Crystallogr.,Sect.D, 55, 1999
6C8M	RNA-activated 2-AIpG monomer, 1.5h soaking Descriptor: 2-amino-1-[(R)-{[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]-3-[(S)-{[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]-1H-imidazol-3-ium, 5'-O-[(R)-(2-amino-1H-imidazol-1-yl)(hydroxy)phosphoryl]guanosine, RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3'), ... Authors: Zhang, W, Szostak, J.W. Deposit date: 2018-01-25 Release date: 2018-05-30 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Crystallographic observation of nonenzymatic RNA primer extension. Elife, 7, 2018
2N1Q	HIV-1 Core Packaging Signal Descriptor: RNA_(155-MER) Authors: Keane, S.C, Summers, M.F. Deposit date: 2015-04-15 Release date: 2015-05-27 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: RNA structure. Structure of the HIV-1 RNA packaging signal. Science, 348, 2015
1K6H	Solution Structure of Conserved AGNN Tetraloops: Insights into Rnt1p RNA processing Descriptor: RNA (5'-R(P*GP*GP*CP*GP*UP*GP*UP*UP*CP*AP*GP*AP*AP*GP*AP*AP*CP*GP*CP*GP*CP*C)-3') Authors: Lebars, I, Lamontagne, B, Yoshizawa, S, Abou Elela, S, Fourmy, D. Deposit date: 2001-10-16 Release date: 2001-12-19 Last modified: 2022-02-23 Method: SOLUTION NMR Cite: Solution structure of conserved AGNN tetraloops: insights into Rnt1p RNA processing. EMBO J., 20, 2001
4O41	Amide linked RNA Descriptor: AMIDE LINKED RNA, STRONTIUM ION Authors: Pallan, P.S, Egli, M. Deposit date: 2013-12-18 Release date: 2014-07-09 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.2 Å) Cite: Amides are excellent mimics of phosphate internucleoside linkages and are well tolerated in short interfering RNAs. Nucleic Acids Res., 42, 2014
3PHP	STRUCTURE OF THE 3' HAIRPIN OF THE TYMV PSEUDOKNOT: PREFORMATION IN RNA FOLDING Descriptor: RNA (5'-R(*GP*GP*UP*UP*CP*CP*GP*AP*GP*GP*GP*UP*CP*AP*UP*CP*GP*GP*AP*AP*CP*CP*A) -3') Authors: Kolk, M.H, Van Der Graaf, M, Wijmenga, S.S, Pleij, C.W.A, Heus, H.A, Hilbers, C.W. Deposit date: 1998-10-13 Release date: 1998-10-21 Last modified: 2023-12-27 Method: SOLUTION NMR Cite: Structure of the 3'-hairpin of the TYMV pseudoknot: preformation in RNA folding. EMBO J., 17, 1998
1KAJ	CONFORMATION OF AN RNA PSEUDOKNOT FROM MOUSE MAMMARY TUMOR VIRUS, NMR, 1 STRUCTURE Descriptor: RNA PSEUDOKNOT APK Authors: Kang, H, Hines, J.V, Tinoco Junior, I. Deposit date: 1996-02-21 Release date: 1996-07-11 Last modified: 2022-02-23 Method: SOLUTION NMR Cite: Conformation of a non-frameshifting RNA pseudoknot from mouse mammary tumor virus. J.Mol.Biol., 259, 1996
1L3D	Low Resolution Crystal Structure of a Viral RNA Pseudoknot Descriptor: RNA pseudoknot Authors: Egli, M, Minasov, G, Su, L, Rich, A. Deposit date: 2002-02-26 Release date: 2002-03-22 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (2.85 Å) Cite: Metal ions and flexibility in a viral RNA pseudoknot at atomic resolution. Proc.Natl.Acad.Sci.USA, 99, 2002
361D	CRYSTAL STRUCTURE OF DOMAIN E OF THERMUS FLAVUS 5S RRNA: A HELICAL RNA-STRUCTURE INCLUDING A TETRALOOP Descriptor: RNA (5'-R(*CP*UP*GP*GP*GP*CP*GP*GP*GP*CP*GP*AP*CP*CP*GP*CP*C P*UP*GP*G)-3') Authors: Perbandt, M, Nolte, A, Lorenz, S, Erdmann, V.A, Betzel, C. Deposit date: 1997-11-10 Release date: 1998-07-01 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (3 Å) Cite: Crystal structure of domain E of Thermus flavus 5S rRNA: a helical RNA structure including a hairpin loop. FEBS Lett., 429, 1998
420D	CRYSTAL STRUCTURE OF A 16-MER RNA DUPLEX WITH NON-ADJACENT A(ANTI).G(SYN) MISMATCHES Descriptor: RNA (5'-R(*GP*CP*AP*GP*AP*GP*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3'), SODIUM ION Authors: Pan, B, Mitra, S.N, Sundaralingam, M. Deposit date: 1998-08-13 Release date: 1999-01-13 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Crystal structure of an RNA 16-mer duplex R(GCAGAGUUAAAUCUGC)2 with nonadjacent G(syn).A+(anti) mispairs. Biochemistry, 38, 1999
6AZ4	RNA hairpin complex with guanosine dinucleotide ligand G(5')ppp(5')G Descriptor: DIGUANOSINE-5'-TRIPHOSPHATE, RNA (32-MER), RNA (5'-R(*CP*AP*GP*CP*AP*GP*CP*AP*G)-3') Authors: Zhang, W, Szostak, J.W. Deposit date: 2017-09-09 Release date: 2018-02-21 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.98 Å) Cite: Structural Rationale for the Enhanced Catalysis of Nonenzymatic RNA Primer Extension by a Downstream Oligonucleotide. J. Am. Chem. Soc., 140, 2018
6BG9	HYBRID NMR/CRYO-EM STRUCTURE OF THE HIV-1 RNA DIMERIZATION SIGNAL Descriptor: RNA dimerization signal Authors: Summers, M.F. Deposit date: 2017-10-27 Release date: 2018-02-21 Last modified: 2024-05-01 Method: ELECTRON MICROSCOPY (9 Å), SOLUTION NMR Cite: Structure of the 30 kDa HIV-1 RNA Dimerization Signal by a Hybrid Cryo-EM, NMR, and Molecular Dynamics Approach. Structure, 26, 2018
1OXJ	Crystal structure of the Smaug RNA binding domain Descriptor: RNA-binding protein Smaug Authors: Green, J.B, Gardner, C.D, Wharton, R.P, Aggarwal, A.K. Deposit date: 2003-04-02 Release date: 2003-07-08 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.8 Å) Cite: RNA recognition via the SAM domain of Smaug. Mol.Cell, 11, 2003
1K6G	Solution Structure of Conserved AGNN Tetraloops: Insights into Rnt1p RNA Processing Descriptor: RNA (5'-R(P*GP*GP*CP*GP*UP*CP*AP*UP*GP*AP*GP*UP*CP*CP*AP*UP*GP*GP*CP*GP*CP*C)-3') Authors: Lebars, I, Lamontagne, B, Yoshizawa, S, Abou Elela, S, Fourmy, D. Deposit date: 2001-10-16 Release date: 2001-12-19 Last modified: 2022-02-23 Method: SOLUTION NMR Cite: Solution structure of conserved AGNN tetraloops: insights into Rnt1p RNA processing. EMBO J., 20, 2001
7LYG	Zika virus RNA promoter stem-loop A with tRNA-scaffold Descriptor: RNA promoter stem-loop A fused with tRNA Authors: Lee, E.H, Choi, K.H. Deposit date: 2021-03-06 Release date: 2021-05-12 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (3.804 Å) Cite: Structures of flavivirus RNA promoters suggest two binding modes with NS5 polymerase. Nat Commun, 12, 2021
5TKO	RNA heptamer duplex with one 2'-5'-linkage Descriptor: COBALT (II) ION, RNA (5'-R(*GP*GP*AP*GP*CP*UP*A)-3'), RNA (5'-R(*UP*AP*GP*CP*UP*CP*C)-3') Authors: Luo, Z, Sheng, J. Deposit date: 2016-10-07 Release date: 2017-10-11 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.52 Å) Cite: RNA heptamer duplex with one 2'-5'-linkage To Be Published

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