PDB: 30436 resultsInfo pagesStatus searchChemie searchBIRD

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7EFH	RNA kink-turn motif Descriptor: RNA (5'-R(*GP*GP*CP*GP*AP*AP*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3') Authors: Kondo, J, Nagashima, M. Deposit date: 2021-03-21 Release date: 2022-03-23 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.7 Å) Cite: RNA kink-turn motif To Be Published
7EI9	RNA kink-turn motif with pyrrolo cytosine Descriptor: RNA (5'-R(*GP*GP*CP*GP*A)-D(P*(4PC))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3'), STRONTIUM ION Authors: Kondo, J, Miyauchi, T. Deposit date: 2021-03-30 Release date: 2022-03-30 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.7 Å) Cite: RNA kink-turn motif with pyrrolo cytosine To Be Published
7EFG	RNA kink-turn motif Descriptor: RNA (5'-R(*GP*GP*CP*GP*AP*AP*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3') Authors: Kondo, J, Nagashima, M. Deposit date: 2021-03-21 Release date: 2022-04-13 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.6 Å) Cite: RNA kink-turn motif To Be Published
1S2M	Crystal Structure of the DEAD box protein Dhh1p Descriptor: Putative ATP-dependent RNA helicase DHH1 Authors: Cheng, Z, Song, H. Deposit date: 2004-01-09 Release date: 2005-03-01 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Crystal structure and functional analysis of DEAD-box protein Dhh1p. Rna, 11, 2005
1QVF	Structure of a deacylated tRNA minihelix bound to the E site of the large ribosomal subunit of Haloarcula marismortui Descriptor: 23S ribosomal rna, 50S RIBOSOMAL PROTEIN L10E, 50S ribosomal protein L13P, ... Authors: Schmeing, T.M, Moore, P.B, Steitz, T.A. Deposit date: 2003-08-27 Release date: 2003-11-11 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Structures of deacylated tRNA mimics bound to the E site of the large ribosomal subunit RNA, 9, 2003
1QVG	Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui Descriptor: 23S ribosomal rna, 50S RIBOSOMAL PROTEIN L10E, 50S ribosomal protein L13P, ... Authors: Schmeing, T.M, Moore, P.B, Steitz, T.A. Deposit date: 2003-08-27 Release date: 2003-11-11 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Structures of deacylated tRNA mimics bound to the E site of the large ribosomal subunit RNA, 9, 2003
6HBT	The structure of the G. violaceus guanidine II riboswitch P2 stem-loop with arcaine Descriptor: 1-(4-carbamimidamidobutyl)guanidine, RNA (5'-R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*(CBV)P*C)-3'), SULFATE ION Authors: Huang, L, Lilley, D.M.J. Deposit date: 2018-08-13 Release date: 2019-02-20 Last modified: 2019-07-10 Method: X-RAY DIFFRACTION (1.66 Å) Cite: Structure-guided design of a high-affinity ligand for a riboswitch. Rna, 25, 2019
6HBX	The structure of the G. violaceus guanidine II riboswitch P2 stem-loop with ethylguanidine Descriptor: N-ETHYLGUANIDINE, RNA (5'-R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*(CBV)P*C)-3'), SODIUM ION, ... Authors: Huang, L, Lilley, D.M.J. Deposit date: 2018-08-13 Release date: 2019-02-20 Last modified: 2019-03-27 Method: X-RAY DIFFRACTION (1.54 Å) Cite: Structure-guided design of a high-affinity ligand for a riboswitch. Rna, 25, 2019
1ZIH	GCAA RNA TETRALOOP, NMR, 10 STRUCTURES Descriptor: RNA (5'-R(*GP*GP*GP*CP*GP*CP*AP*AP*GP*CP*CP*U)-3') Authors: Jucker, F.M, Heus, H.A, Yip, P.F, Moors, E, Pardi, A. Deposit date: 1996-07-27 Release date: 1997-03-12 Last modified: 2022-03-02 Method: SOLUTION NMR Cite: A network of heterogeneous hydrogen bonds in GNRA tetraloops. J.Mol.Biol., 264, 1996
6HC5	The structure of the G. violaceus guanidine II riboswitch P2 stem-loop with audouine Descriptor: 1-(5-carbamimidamidopentyl)guanidine, RNA (5'-R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*(CBV)P*C)-3'), SODIUM ION, ... Authors: Huang, L, Lilley, D.M.J. Deposit date: 2018-08-14 Release date: 2019-02-20 Last modified: 2019-03-27 Method: X-RAY DIFFRACTION (1.413 Å) Cite: Structure-guided design of a high-affinity ligand for a riboswitch. Rna, 25, 2019
1ZIF	GAAA RNA TETRALOOP, NMR, 10 STRUCTURES Descriptor: RNA (5'-R(*GP*GP*GP*CP*GP*AP*AP*AP*GP*CP*CP*U)-3') Authors: Jucker, F.M, Heus, H.A, Yip, P.F, Moors, E, Pardi, A. Deposit date: 1996-07-27 Release date: 1997-03-12 Last modified: 2022-03-02 Method: SOLUTION NMR Cite: A network of heterogeneous hydrogen bonds in GNRA tetraloops. J.Mol.Biol., 264, 1996
1ZIG	GAGA RNA TETRALOOP, NMR, 10 STRUCTURES Descriptor: RNA (5'-R(*GP*GP*GP*CP*GP*AP*GP*AP*GP*CP*CP*U)-3') Authors: Jucker, F.M, Heus, H.A, Yip, P.F, Moors, E, Pardi, A. Deposit date: 1996-07-27 Release date: 1997-03-12 Last modified: 2022-03-02 Method: SOLUTION NMR Cite: A network of heterogeneous hydrogen bonds in GNRA tetraloops. J.Mol.Biol., 264, 1996
2NCI	RNA Bulge Loop that Specifically Binds Metal Ions Descriptor: RNA (28-MER) Authors: Gu, X, Schroeder, S.J. Deposit date: 2016-04-01 Release date: 2016-09-28 Last modified: 2016-10-19 Method: SOLUTION NMR Cite: NMR Structures and Dynamics in a Prohead RNA Loop that Binds Metal Ions. J Phys Chem Lett, 7, 2016
4GP7	Polynucleotide kinase Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CITRIC ACID, MAGNESIUM ION, ... Authors: Wang, L.K, Das, U, Smith, P, Shuman, S. Deposit date: 2012-08-20 Release date: 2012-11-14 Last modified: 2017-11-15 Method: X-RAY DIFFRACTION (2 Å) Cite: Structure and mechanism of the polynucleotide kinase component of the bacterial Pnkp-Hen1 RNA repair system. Rna, 18, 2012
4GP6	Polynucleotide kinase Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Metallophosphoesterase Authors: Wang, L.K, Das, U, Smith, P, Shuman, S. Deposit date: 2012-08-20 Release date: 2012-11-14 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structure and mechanism of the polynucleotide kinase component of the bacterial Pnkp-Hen1 RNA repair system. Rna, 18, 2012
2RQJ	Quadruplex structure of an RNA aptamer against bovine prion protein Descriptor: RNA (5'-R(*GP*GP*AP*GP*GP*AP*GP*GP*AP*GP*GP*A)-3') Authors: Katahira, M, Mashima, T, Matsugami, A, Nishikawa, F, Nishikawa, S. Deposit date: 2009-07-18 Release date: 2009-11-17 Last modified: 2022-03-16 Method: SOLUTION NMR Cite: Unique quadruplex structure and interaction of an RNA aptamer against bovine prion protein Nucleic Acids Res., 37, 2009
2GV4	Solution structure of the poliovirus 3'-UTR Y-stem Descriptor: Short RNA strand 5'-GGACCUCUCGAAAGAGUGGUCC-3' Authors: Heus, H.A, Zoll, J, Tessari, M, van Kuppeveld, F.J.M, Melchers, W.J.G. Deposit date: 2006-05-02 Release date: 2007-03-20 Last modified: 2022-03-09 Method: SOLUTION NMR Cite: Breaking pseudo-twofold symmetry in the poliovirus 3'-UTR Y-stem by restoring Watson-Crick base pairs. Rna, 13, 2007
2AP5	Solution Structure of the C27A ScYLV P1-P2 Frameshifting Pseudoknot, Average Structure Descriptor: C27A Sugarcane Yellow Leaf Virus RNA pseudoknot Authors: Cornish, P.V, Giedroc, D.P. Deposit date: 2005-08-15 Release date: 2006-09-05 Last modified: 2022-03-09 Method: SOLUTION NMR Cite: The global structures of a wild-type and poorly functional plant luteoviral mRNA pseudoknot are essentially identical Rna, 12, 2006
2AP0	Solution Structure of the C27A ScYLV P1-P2 Frameshifting Pseudoknot, 20 Lowest Energy Structures Descriptor: C27A Sugarcane Yellow Leaf Virus RNA pseudoknot Authors: Cornish, P.V, Giedroc, D.P. Deposit date: 2005-08-15 Release date: 2006-09-05 Last modified: 2022-03-09 Method: SOLUTION NMR Cite: The global structures of a wild-type and poorly functional plant luteoviral mRNA pseudoknot are essentially identical Rna, 12, 2006
1QVA	YEAST INITIATION FACTOR 4A N-TERMINAL DOMAIN Descriptor: INITIATION FACTOR 4A Authors: Johnson, E.R, McKay, D.B. Deposit date: 1999-07-07 Release date: 1999-12-02 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Crystallographic structure of the amino terminal domain of yeast initiation factor 4A, a representative DEAD-box RNA helicase RNA, 5, 1999
2QTX	Crystal structure of an Hfq-like protein from Methanococcus jannaschii Descriptor: Uncharacterized protein MJ1435 Authors: Nielsen, J.S, Boggild, A, Andersen, C.B.F, Nielsen, G, Boysen, A, Brodersen, D.E, Valentin-Hansen, P. Deposit date: 2007-08-03 Release date: 2007-11-06 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.5 Å) Cite: An Hfq-like protein in archaea: Crystal structure and functional characterization of the Sm protein from Methanococcus jannaschii. Rna, 13, 2007
8UKQ	RNA polymerase II elongation complex with Fapy-dG lesion in apo state Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... Authors: Hou, P, Oh, J, Wang, D. Deposit date: 2023-10-15 Release date: 2024-04-24 Method: X-RAY DIFFRACTION (3.5 Å) Cite: Molecular Mechanism of RNA Polymerase II Transcriptional Mutagenesis by the Epimerizable DNA Lesion, Fapy·dG. J.Am.Chem.Soc., 146, 2024
8UKR	RNA polymerase II elongation complex with Fapy-dG lesion soaking with ATP before chemistry Descriptor: ADENOSINE-5'-TRIPHOSPHATE, DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ... Authors: Hou, P, Oh, J, Wang, D. Deposit date: 2023-10-15 Release date: 2024-04-24 Method: X-RAY DIFFRACTION (3.78 Å) Cite: Molecular Mechanism of RNA Polymerase II Transcriptional Mutagenesis by the Epimerizable DNA Lesion, Fapy·dG. J.Am.Chem.Soc., 146, 2024
8UKS	RNA polymerase II elongation complex with Fapy-dG lesion soaking with CTP before chemistry Descriptor: CYTIDINE-5'-TRIPHOSPHATE, DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ... Authors: Hou, P, Oh, J, Wang, D. Deposit date: 2023-10-15 Release date: 2024-04-24 Method: X-RAY DIFFRACTION (3.4 Å) Cite: Molecular Mechanism of RNA Polymerase II Transcriptional Mutagenesis by the Epimerizable DNA Lesion, Fapy·dG. J.Am.Chem.Soc., 146, 2024
8UKT	RNA polymerase II elongation complex with Fapy-dG lesion with AMP added Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... Authors: Hou, P, Oh, J, Wang, D. Deposit date: 2023-10-15 Release date: 2024-04-24 Method: X-RAY DIFFRACTION (3.6 Å) Cite: Molecular Mechanism of RNA Polymerase II Transcriptional Mutagenesis by the Epimerizable DNA Lesion, Fapy·dG. J.Am.Chem.Soc., 146, 2024

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