PDB: 16 件ウェブページステータス検索Chemie searchBIRD

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1CFR	CRYSTAL STRUCTURE OF CITROBACTER FREUNDII RESTRICTION ENDONUCLEASE CFR10I AT 2.15 ANGSTROMS RESOLUTION. 分子名称: RESTRICTION ENDONUCLEASE 著者 Bozic, D, Grazulis, S, Siksnys, V, Huber, R. 登録日 1996-02-02 公開日 1997-01-27 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Crystal structure of Citrobacter freundii restriction endonuclease Cfr10I at 2.15 A resolution. J.Mol.Biol., 255, 1996
1KNV	Bse634I restriction endonuclease 分子名称: ACETATE ION, Bse634I restriction endonuclease, CHLORIDE ION 著者 Grazulis, S, Deibert, M, Rimseliene, R, Skirgaila, R, Sasnauskas, G, Lagunavicius, A, Repin, V, Urbanke, C, Huber, R, Siksnys, V. 登録日 2001-12-19 公開日 2002-02-27 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.17 Å) 主引用文献 Crystal structure of the Bse634I restriction endonuclease: comparison of two enzymes recognizing the same DNA sequence. Nucleic Acids Res., 30, 2002
3DPG	SgrAI with noncognate DNA bound 分子名称: CALCIUM ION, DNA (5'-D(*DAP*DAP*DGP*DTP*DCP*DGP*DAP*DCP*DCP*DGP*DGP*DTP*DGP*DGP*DAP*DCP*DT)-3'), SgraIR restriction enzyme 著者 Dunten, P.W, Horton, N.C, Little, E.J. 登録日 2008-07-08 公開日 2008-08-19 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.91 Å) 主引用文献 The structure of SgrAI bound to DNA; recognition of an 8 base pair target. Nucleic Acids Res., 36, 2008
3DVO	SgrAI with cognate DNA and calcium bound 分子名称: CALCIUM ION, DNA (5'-D(*DGP*DAP*DGP*DTP*DCP*DCP*DAP*DCP*DCP*DGP*DGP*DTP*DGP*DGP*DAP*DCP*DTP*DC)-3'), SgraIR restriction enzyme 著者 Dunten, P.W, Horton, N.C, Little, E.J. 登録日 2008-07-18 公開日 2008-08-19 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.892 Å) 主引用文献 The structure of SgrAI bound to DNA; recognition of an 8 base pair target. Nucleic Acids Res., 36, 2008
3DW9	SgrAI with cognate DNA and manganese bound 分子名称: DNA (5'-D(*DGP*DAP*DGP*DTP*DCP*DCP*DAP*DCP*DCP*DGP*DGP*DTP*DGP*DGP*DAP*DCP*DTP*DC)-3'), MANGANESE (II) ION, SgraIR restriction enzyme 著者 Dunten, P.W, Horton, N.C, Little, E.J. 登録日 2008-07-21 公開日 2008-08-19 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 The structure of SgrAI bound to DNA; recognition of an 8 base pair target. Nucleic Acids Res., 36, 2008
3MQ6	Domain swapped SgrAI with DNA and calcium bound 分子名称: CALCIUM ION, DNA (5'-D(*AP*AP*GP*TP*CP*CP*AP*CP*CP*GP*GP*TP*GP*GP*AP*CP*T)-3'), SgraIR restriction enzyme 著者 Dunten, P.W, Horton, N.C, Little, E.J. 登録日 2010-04-27 公開日 2010-11-10 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Domain swapping in allosteric modulation of DNA specificity. Plos Biol., 8, 2010
3MQY	SgrAI with cleaved DNA and Magnesium bound 分子名称: DNA (5'-D(*GP*AP*GP*TP*CP*CP*A)-3'), DNA (5'-D(P*CP*CP*GP*GP*TP*GP*GP*AP*CP*TP*C)-3'), MAGNESIUM ION, ... 著者 Dunten, P.W, Horton, N.C, Little, E.J. 登録日 2010-04-28 公開日 2010-11-24 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 New clues in the allosteric activation of DNA cleavage by SgrAI: structures of SgrAI bound to cleaved primary-site DNA and uncleaved secondary-site DNA. Acta Crystallogr.,Sect.D, 67, 2011
3N7B	SgrAI bound to secondary site DNA and Ca(II) 分子名称: CALCIUM ION, DNA (5'-D(*AP*GP*TP*CP*CP*AP*CP*CP*GP*GP*GP*GP*GP*AP*CP*T)-3'), DNA (5'-D(*AP*GP*TP*CP*CP*CP*CP*CP*GP*GP*TP*GP*GP*AP*CP*T)-3'), ... 著者 Horton, N.C, Little, E.J, Dunten, P.W. 登録日 2010-05-26 公開日 2010-11-24 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.65 Å) 主引用文献 New clues in the allosteric activation of DNA cleavage by SgrAI: structures of SgrAI bound to cleaved primary-site DNA and uncleaved secondary-site DNA. Acta Crystallogr.,Sect.D, 67, 2011
3N78	SgrAI bound to Secondary Site DNA and Mg(II) 分子名称: DNA (5'-D(*AP*GP*TP*CP*CP*AP*CP*CP*GP*GP*GP*GP*GP*AP*CP*T)-3'), DNA (5'-D(*AP*GP*TP*CP*CP*CP*CP*CP*GP*GP*TP*GP*GP*AP*CP*T)-3'), MAGNESIUM ION, ... 著者 Horton, N.C, Little, E.J, Dunten, P.W. 登録日 2010-05-26 公開日 2010-11-24 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.95 Å) 主引用文献 New clues in the allosteric activation of DNA cleavage by SgrAI: structures of SgrAI bound to cleaved primary-site DNA and uncleaved secondary-site DNA. Acta Crystallogr.,Sect.D, 67, 2011
3V1Z	Crystal structure of Type IIF restriction endonuclease Bse634I with cognate DNA 分子名称: DNA (5'-D(*TP*CP*GP*CP*GP*CP*CP*GP*GP*CP*GP*CP*G)-3'), Endonuclease Bse634IR 著者 Manakova, E.N, Grazulis, S, Golovenko, D, Tamulaitiene, G. 登録日 2011-12-11 公開日 2012-04-25 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structural mechanisms of the degenerate sequence recognition by Bse634I restriction endonuclease. Nucleic Acids Res., 40, 2012
3V21	Crystal structure of Type IIF restriction endonuclease Bse634I with cognate DNA 分子名称: DNA (5'-D(*TP*TP*CP*GP*AP*CP*CP*GP*GP*TP*CP*GP*A)-3'), Endonuclease Bse634IR 著者 Manakova, E.N, Grazulis, S, Golovenko, D, Tamulaitiene, G. 登録日 2011-12-11 公開日 2012-04-25 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Structural mechanisms of the degenerate sequence recognition by Bse634I restriction endonuclease. Nucleic Acids Res., 40, 2012
3V20	Crystal structure of Type IIF restriction endonuclease Bse634I with cognate DNA 分子名称: 2-(2-(2-(2-(2-(2-ETHOXYETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHANOL, CALCIUM ION, CHLORIDE ION, ... 著者 Manakova, E.N, Grazulis, S, Golovenko, D, Tamulaitiene, G. 登録日 2011-12-11 公開日 2012-04-25 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Structural mechanisms of the degenerate sequence recognition by Bse634I restriction endonuclease. Nucleic Acids Res., 40, 2012
4C3G	cryo-EM structure of activated and oligomeric restriction endonuclease SgrAI 分子名称: 5'-D(*CP*CP*GP*GP*TP*GP*TP*GP*AP*AP*GP*AP*CP*CP *CP*AP*CP*GP*CP*AP*TP*CP)-3', 5'-D(*GP*AP*TP*GP*CP*GP*TP*GP*GP*GP*TP*CP*TP*TP *CP*AP*CP*AP)-3', SGRAIR RESTRICTION ENZYME 著者 Lyumkis, D, Talley, H, Stewart, A, Shah, S, Park, C.K, Tama, F, Potter, C.S, Carragher, B, Horton, N.C. 登録日 2013-08-23 公開日 2013-09-11 最終更新日 2017-08-23 実験手法 ELECTRON MICROSCOPY (8.6 Å) 主引用文献 Allosteric Regulation of DNA Cleavage and Sequence-Specificity Through Run-on Oligomerization. Structure, 21, 2013
6OBJ	Structure of a DNA-bound dimer extracted from filamentous SgrAI endonuclease in its activated form 分子名称: DNA (26-MER), MAGNESIUM ION, SgraIR restriction enzyme 著者 Polley, S, Lyumkis, D, Horton, N.C. 登録日 2019-03-20 公開日 2020-02-26 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Mechanism of Filamentation-Induced Allosteric Activation of the SgrAI Endonuclease. Structure, 27, 2019
7S8D	Structure of DNA-free SgrAI 分子名称: CALCIUM ION, SgraIR restriction enzyme 著者 Horton, N.C. 登録日 2021-09-17 公開日 2022-08-24 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.02 Å) 主引用文献 Pretransition state and apo structures of the filament-forming enzyme SgrAI elucidate mechanisms of activation and substrate specificity. J.Biol.Chem., 298, 2022
7SS5	Activated SgrAI endonuclease DNA-bound dimer with Ca2+ and intact primary site DNA 分子名称: CALCIUM ION, DNA (5'-D(P*GP*GP*TP*CP*TP*TP*CP*AP*CP*AP*CP*CP*GP*GP*TP*GP*TP*GP*AP*AP*GP*AP*CP*C)-3'), SgraIR restriction enzyme 著者 Shan, Z, Lyumkis, D, Horton, N.C. 登録日 2021-11-09 公開日 2021-12-01 最終更新日 2022-06-15 実験手法 ELECTRON MICROSCOPY (2.7 Å) 主引用文献 Pretransition state and apo structures of the filament-forming enzyme SgrAI elucidate mechanisms of activation and substrate specificity. J.Biol.Chem., 298, 2022