PDB: 1391 resultsInfo pagesStatus searchChemie searchBIRD

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2COQ	Structure of new antigen receptor variable domain from sharks Descriptor: new antigen receptor variable domain Authors: Streltsov, V.A, Carmichael, J.A, Nuttall, S.D. Deposit date: 2005-05-18 Release date: 2005-10-25 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structure of a shark IgNAR antibody variable domain and modeling of an early-developmental isotype. Protein Sci., 14, 2005
2D7T	Crystal structure of human anti polyhydroxybutyrate antibody Fv Descriptor: anti polyhydroxybutyrate antibody Fv, heavy chain, light chain Authors: Watanabe, H. Deposit date: 2005-11-29 Release date: 2006-12-12 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.7 Å) Cite: A human antibody fragment with high affinity for the biodegradable polymer film To be Published
2D9C	Solution structure of the first ig-like domain of signal-regulatory protein beta-1 (SIRP-beta-1) Descriptor: Signal-regulatory protein beta-1 Authors: Nagashima, K, Hayashi, F, Yoshida, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2005-12-09 Release date: 2006-12-09 Last modified: 2022-03-09 Method: SOLUTION NMR Cite: Solution structure of the first ig-like domain of signal-regulatory protein beta-1 ( SIRP-beta-1) To be Published
2DD8	Crystal Structure of SARS-CoV Spike Receptor-Binding Domain Complexed with Neutralizing Antibody Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, IGG Heavy Chain, IGG Light Chain, ... Authors: Prabakaran, P, Gan, J.H, Feng, Y, Zhu, Z.Y, Xiao, X.D, Ji, X, Dimitrov, D.S. Deposit date: 2006-01-24 Release date: 2006-04-04 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structure of Severe Acute Respiratory Syndrome Coronavirus Receptor-binding Domain Complexed with Neutralizing Antibody J.Biol.Chem., 281, 2006
2DDQ	Crystal Structure of the Fab fragment of a R310 antibody complexed with (R)-HNE-histidine adduct Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, N-ACETYL-1-[(2R,3S,5R)-5-HYDROXY-2-PENTYLTETRAHYDROFURAN-3-YL]-L-HISTIDINE, R310 antibody heavy chain, ... Authors: Ito, S. Deposit date: 2006-02-02 Release date: 2006-07-11 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Bispecific abs against modified protein and DNA with oxidized lipids Proc.Natl.Acad.Sci.Usa, 103, 2006
2DF3	The structure of Siglec-7 in complex with alpha(2,3)/alpha(2,6) disialyl lactotetraosyl 2-(trimethylsilyl)ethyl Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CYSTEINE, N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-3)-[N-acetyl-alpha-neuraminic acid-(2-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Attrill, H. Deposit date: 2006-02-23 Release date: 2006-06-20 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.9 Å) Cite: The structure of siglec-7 in complex with sialosides: leads for rational structure-based inhibitor design Biochem.J., 397, 2006
2DKS	Solution structure of the first IG-like domain of human carcinoembryonic antigen related cell adhesion molecule 8 Descriptor: Carcinoembryonic antigen-related cell adhesion molecule 8 Authors: Nagashima, K, Hayashi, F, Yoshida, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-04-14 Release date: 2007-05-01 Last modified: 2022-03-09 Method: SOLUTION NMR Cite: Solution structure of the first IG-like domain of human carcinoembryonic antigen related cell adhesion molecule 8 To be Published
2DLF	HIGH RESOLUTION CRYSTAL STRUCTURE OF THE FV FRAGMENT FROM AN ANTI-DANSYL SWITCH VARIANT ANTIBODY IGG2A(S) CRYSTALLIZED AT PH 6.75 Descriptor: PROTEIN (ANTI-DANSYL IMMUNOGLOBULIN IGG2A(S) (HEAVY CHAIN)), PROTEIN (ANTI-DANSYL IMMUNOGLOBULIN IGG2A(S)-KAPPA (LIGHT CHAIN)), SULFATE ION Authors: Nakasako, M, Takahashi, H, Shimada, I, Arata, Y. Deposit date: 1998-12-17 Release date: 1999-12-17 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (1.55 Å) Cite: The pH-dependent structural variation of complementarity-determining region H3 in the crystal structures of the Fv fragment from an anti-dansyl monoclonal antibody. J.Mol.Biol., 291, 1999
2DQC	Crystal structure of hyhel-10 FV mutant(Hy33f) complexed with hen egg lysozyme Descriptor: Ig VH,anti-lysozyme, Lysozyme C, lysozyme binding Ig kappa chain V23-J2 region Authors: Shiroishi, M, Kondo, H, Tsumoto, K, Kumagai, I. Deposit date: 2006-05-25 Release date: 2007-01-23 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural consequences of mutations in interfacial Tyr residues of a protein antigen-antibody complex. The case of HyHEL-10-HEL J.Biol.Chem., 282, 2007
2DQD	Crystal structure of hyhel-10 FV mutant (Hy50f) complexed with hen egg lysozyme Descriptor: Ig VH,anti-lysozyme, Lysozyme C, lysozyme binding Ig kappa chain V23-J2 region Authors: Shiroishi, M, Kondo, H, Tsumoto, K, Kumagai, I. Deposit date: 2006-05-25 Release date: 2007-01-23 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural consequences of mutations in interfacial Tyr residues of a protein antigen-antibody complex. The case of HyHEL-10-HEL J.Biol.Chem., 282, 2007
2DQE	Crystal structure of hyhel-10 FV mutant (Hy53a) complexed with hen egg lysozyme Descriptor: Ig VH,anti-lysozyme, Lysozyme C, lysozyme binding Ig kappa chain V23-J2 region Authors: Shiroishi, M, Kondo, H, Tsumoto, K, Kumagai, I. Deposit date: 2006-05-25 Release date: 2007-01-23 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structural consequences of mutations in interfacial Tyr residues of a protein antigen-antibody complex. The case of HyHEL-10-HEL J.Biol.Chem., 282, 2007
2DQF	Crystal structure of hyhel-10 FV mutant (y33ay53a) complexed with hen egg lysozyme Descriptor: Ig VH,anti-lysozyme, Lysozyme C, lysozyme binding Ig kappa chain V23-J2 region Authors: Shiroishi, M, Kondo, H, Tsumoto, K, Kumagai, I. Deposit date: 2006-05-25 Release date: 2007-01-23 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural consequences of mutations in interfacial Tyr residues of a protein antigen-antibody complex. The case of HyHEL-10-HEL J.Biol.Chem., 282, 2007
2DQT	High resolution crystal structure of the complex of the hydrolytic antibody Fab 6D9 and a transition-state analog Descriptor: IMMUNOGLOBULIN 6D9, [1-(3-DIMETHYLAMINO-PROPYL)-3-ETHYL-UREIDO]-[4-(2,2,2-TRIFLUORO-ACETYLAMINO)-BENZYL]PHOSPHINIC ACID-2-(2,2-DIHYDRO-ACETYLAMINO)-3-HYDROXY-1-(4-NITROPHENYL)-PROPYL ESTER Authors: Kristensen, O, Vassylyev, D.G, Tanaka, F, Ito, N, Morikawa, K, Fujii, I. Deposit date: 2006-05-30 Release date: 2006-06-20 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Thermodynamic and structural basis for transition-state stabilization in antibody-catalyzed hydrolysis J.Mol.Biol., 369, 2007
2DQU	Crystal form II: high resolution crystal structure of the complex of the hydrolytic antibody Fab 6D9 and a transition-state analog Descriptor: IMMUNOGLOBULIN 6D9, [1-(3-DIMETHYLAMINO-PROPYL)-3-ETHYL-UREIDO]-[4-(2,2,2-TRIFLUORO-ACETYLAMINO)-BENZYL]PHOSPHINIC ACID-2-(2,2-DIHYDRO-ACETYLAMINO)-3-HYDROXY-1-(4-NITROPHENYL)-PROPYL ESTER Authors: Kristensen, O, Vassylyev, D.G, Tanaka, F, Ito, N, Morikawa, K, Fujii, I. Deposit date: 2006-05-30 Release date: 2006-06-20 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Thermodynamic and structural basis for transition-state stabilization in antibody-catalyzed hydrolysis J.Mol.Biol., 369, 2007
2DRU	Crystal structure and binding properties of the CD2 and CD244 (2B4) binding protein, CD48 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, chimera of CD48 antigen and T-cell surface antigen CD2 Authors: Evans, E.J, Ikemizu, S, Davis, S.J. Deposit date: 2006-06-15 Release date: 2006-07-04 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Crystal Structure and Binding Properties of the CD2 and CD244 (2B4)-binding Protein, CD48 J.Biol.Chem., 281, 2006
2DTM	Thermodynamic and structural analyses of hydrolytic mechanism by catalytic antibodies Descriptor: IMMUNOGLOBULIN 6D9 Authors: Oda, M, Ito, N, Tsumuraya, T, Suzuki, K, Fujii, I. Deposit date: 2006-07-13 Release date: 2007-05-29 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Thermodynamic and structural basis for transition-state stabilization in antibody-catalyzed hydrolysis J.Mol.Biol., 369, 2007
2E7L	Structure of a high-affinity mutant of the 2C TCR in complex with Ld/QL9 Descriptor: Beta-chain, Cytotoxic Tcell receptor, H-2 class I histocompatibility antigen, ... Authors: Garcia, K.C, Colf, L.A. Deposit date: 2007-01-11 Release date: 2007-04-24 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.5 Å) Cite: How a single T cell receptor recognizes both self and foreign MHC. Cell(Cambridge,Mass.), 129, 2007
2EDO	Solution structure of the first ig-like domain from human CD48 antigen Descriptor: CD48 antigen Authors: Nagashima, K, Nagashima, T, Yoshida, M, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2007-02-14 Release date: 2007-08-14 Last modified: 2022-03-09 Method: SOLUTION NMR Cite: Solution structure of the first ig-like domain from human CD48 antigen To be Published
2EXY	Crystal structure of the E148Q Mutant of EcClC, Fab complexed in absence of bound ions Descriptor: Fab Fragment (Heavy Chain), Fab Fragment (Light Chain), H(+)/Cl(-) exchange transporter clcA Authors: Lobet, S, Dutzler, R. Deposit date: 2005-11-09 Release date: 2006-01-24 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Ion-binding properties of the ClC chloride selectivity filter. Embo J., 25, 2006
2F58	IGG1 FAB FRAGMENT (58.2) COMPLEX WITH 12-RESIDUE CYCLIC PEPTIDE (INCLUDING RESIDUES 315-324 OF HIV-1 GP120) (MN ISOLATE) Descriptor: 1-IMINO-5-PENTANONE, PROTEIN (HIV-1 GP120), PROTEIN (IGG1 FAB 58.2 ANTIBODY (HEAVY CHAIN)), ... Authors: Stanfield, R.L, Cabezas, E, Satterthwait, A.C, Stura, E.A, Profy, A.T, Wilson, I.A. Deposit date: 1998-10-23 Release date: 1999-02-09 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Dual conformations for the HIV-1 gp120 V3 loop in complexes with different neutralizing fabs. Structure Fold.Des., 7, 1999
2FB4	DIR PRIMAERSTRUKTUR DES KRISTALLISIERBAREN MONOKLONALEN IMMUNOGLOBULINS IGG1 KOL. II. AMINOSAEURESEQUENZ DER L-KETTE, LAMBDA-TYP, SUBGRUPPE I (GERMAN) Descriptor: IGG1-LAMBDA KOL FAB (HEAVY CHAIN), IGG1-LAMBDA KOL FAB (LIGHT CHAIN) Authors: Marquart, M, Huber, R. Deposit date: 1989-04-18 Release date: 1989-07-12 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (1.9 Å) Cite: The primary structure of crystallizable monoclonal immunoglobulin IgG1 Kol. II. Amino acid sequence of the L-chain, gamma-type, subgroup I Biol.Chem.Hoppe-Seyler, 370, 1989
2FBJ	REFINED CRYSTAL STRUCTURE OF THE GALACTAN-BINDING IMMUNOGLOBULIN FAB J539 AT 1.95-ANGSTROMS RESOLUTION Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, IGA-KAPPA J539 FAB (HEAVY CHAIN), ... Authors: Bhat, T.N, Padlan, E.A, Davies, D.R. Deposit date: 1989-08-18 Release date: 1990-07-15 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Refined Crystal Structure of the Galactan-Binding Immunoglobulin Fab J539 at 1.95-Angstroms Resolution To be Published
2FBO	Crystal Structure of the Two Tandem V-type Regions of VCBP3 (v-region-containing chitin binding protein) to 1.85 A Descriptor: variable region-containing chitin-binding protein 3 Authors: Hernandez Prada, J.A, Haire, R.N, Jakoncic, J, Cannon, J.P, Litman, G.W, Ostrov, D.A. Deposit date: 2005-12-09 Release date: 2006-10-17 Last modified: 2017-10-18 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Ancient evolutionary origin of diversified variable regions demonstrated by crystal structures of an immune-type receptor in amphioxus Nat.Immunol., 7, 2006
2FD6	Structure of Human Urokinase Plasminogen Activator in Complex with Urokinase Receptor and an anti-upar antibody at 1.9 A Descriptor: 1,2-ETHANEDIOL, 2-ETHOXYETHANOL, 2-acetamido-2-deoxy-alpha-D-glucopyranose, ... Authors: Huang, M, Huai, Q, Li, Y. Deposit date: 2005-12-13 Release date: 2006-02-21 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structure of human urokinase plasminogen activator in complex with its receptor Science, 311, 2006
2FL5	Cofactor-containing antibodies: Crystal structure of the original yellow antibody Descriptor: Immunoglobulin Igg1 Heavy chain, Immunoglobulin Igg1 Lambda Light Chain, RIBOFLAVIN Authors: Zhu, X, Wilson, I.A. Deposit date: 2006-01-05 Release date: 2006-02-21 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (3 Å) Cite: Cofactor-containing antibodies: Crystal structure of the original yellow antibody. Proc.Natl.Acad.Sci.Usa, 103, 2006

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