PDB: 1333 resultsInfo pagesStatus searchChemie searchBIRD

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8B0X	Translating 70S ribosome in the unrotated state (P and E, tRNAs) Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Fromm, S.A, O'Connor, K.M, Purdy, M, Bhatt, P.R, Loughran, G, Atkins, J.F, Jomaa, A, Mattei, S. Deposit date: 2022-09-08 Release date: 2022-11-30 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (1.55 Å) Cite: The translating bacterial ribosome at 1.55 angstrom resolution generated by cryo-EM imaging services. Nat Commun, 14, 2023
8GLP	mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure) Descriptor: 1,4-DIAMINOBUTANE, 18S rRNA, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ... Authors: Holm, M, Natchiar, K.S, Rundlet, E.J, Myasnikov, A.G, Watson, Z.L, Altman, R.B, Blanchard, S.C. Deposit date: 2023-03-22 Release date: 2023-04-19 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (1.67 Å) Cite: mRNA decoding in human is kinetically and structurally distinct from bacteria. Nature, 617, 2023
8CGJ	Streptomycin bound to the 30S body Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S16, ... Authors: Paternoga, H, Crowe-McAuliffe, C, Beckert, B, Wilson, D.N. Deposit date: 2023-02-05 Release date: 2023-07-26 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (1.79 Å) Cite: Structural conservation of antibiotic interaction with ribosomes. Nat.Struct.Mol.Biol., 30, 2023
8CF1	Tetracycline bound to the 30S head Descriptor: 16S rRNA, 30S ribosomal protein S2, 30S ribosomal protein S7, ... Authors: Paternoga, H, Crowe-McAuliffe, C, Beckert, B, Wilson, D.N. Deposit date: 2023-02-02 Release date: 2023-07-26 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (1.82 Å) Cite: Structural conservation of antibiotic interaction with ribosomes. Nat.Struct.Mol.Biol., 30, 2023
8FTO	E. coli 70S ribosome with an improved MS2 tag inserted in H98 Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Nissley, A.J, Cate, J.H.D. Deposit date: 2023-01-12 Release date: 2023-08-02 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (1.85 Å) Cite: Interactions between terminal ribosomal RNA helices stabilize the E. coli large ribosomal subunit. Rna, 29, 2023
1WF3	Crystal structure of GTP-binding protein TT1341 from Thermus thermophilus HB8 Descriptor: GLYCEROL, GTP-binding protein, MAGNESIUM ION, ... Authors: Kawazoe, M, Hori-Takemoto, C, Kaminishi, T, Sekine, S, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2004-05-25 Release date: 2004-11-25 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.88 Å) Cite: Crystal structure of GTP-binding protein TT1341 from Thermus thermophilus HB8 To be Published
8CGI	Pentacycline TP038 bound to the 30S head Descriptor: 16S rRNA, 30S ribosomal protein S7, Large ribosomal subunit protein bL31A, ... Authors: Paternoga, H, Crowe-McAuliffe, C, Novacek, J, Wilson, D.N. Deposit date: 2023-02-04 Release date: 2023-07-26 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (1.89 Å) Cite: Structural conservation of antibiotic interaction with ribosomes. Nat.Struct.Mol.Biol., 30, 2023
3IEV	Crystal Structure of ERA in Complex with MgGNP and the 3' End of 16S rRNA Descriptor: 5'-R(P*AP*UP*CP*AP*CP*CP*UP*CP*CP*UP*UP*A)-3', GTP-binding protein era, MAGNESIUM ION, ... Authors: Tu, C, Ji, X. Deposit date: 2009-07-23 Release date: 2009-08-25 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structure of ERA in complex with the 3' end of 16S rRNA: implications for ribosome biogenesis Proc.Natl.Acad.Sci.USA, 106, 2009
8AYE	E. coli 70S ribosome bound to thermorubin and fMet-tRNA Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Sanyal, S, Parajuli, N.P, Emmerich, A.G. Deposit date: 2022-09-02 Release date: 2023-03-01 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (1.96 Å) Cite: Antibiotic thermorubin tethers ribosomal subunits and impedes A-site interactions to perturb protein synthesis in bacteria. Nat Commun, 14, 2023
8CCS	80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex Descriptor: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... Authors: Milicevic, N, Jenner, L, Myasnikov, A, Yusupov, M, Yusupova, G. Deposit date: 2023-01-27 Release date: 2023-09-20 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (1.97 Å) Cite: mRNA reading frame maintenance during eukaryotic ribosome translocation. Nature, 625, 2024
7K00	Structure of the Bacterial Ribosome at 2 Angstrom Resolution Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Watson, Z.L, Ward, F.R, Meheust, R, Ad, O, Schepartz, A, Banfield, J.F, Cate, J.H.D. Deposit date: 2020-09-02 Release date: 2020-09-23 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (1.98 Å) Cite: Structure of the bacterial ribosome at 2 angstrom resolution. Elife, 9, 2020
8QOA	Structure of SecM-stalled Escherichia coli 70S ribosome Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S16, ... Authors: Gersteuer, F, Morici, M, Wilson, D.N. Deposit date: 2023-09-28 Release date: 2024-03-20 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (2 Å) Cite: The SecM arrest peptide traps a pre-peptide bond formation state of the ribosome. Nat Commun, 15, 2024
2CXC	Crystal structure of archaeal transcription termination factor NusA Descriptor: NusA Authors: Shibata, R, Bessho, Y, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2005-06-28 Release date: 2005-12-28 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal structure and RNA-binding analysis of the archaeal transcription factor NusA Biochem.Biophys.Res.Commun., 355, 2007
8G6W	Structure of WT E.coli 70S ribosome complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site ortho-aminobenzoic acid charged NH-tRNAPhe Descriptor: 16S rRNA, 2-AMINO-BENZAMIDE, 23S rRNA, ... Authors: Majumdar, C, Cate, J.H.D. Deposit date: 2023-02-16 Release date: 2023-04-05 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (2.02 Å) Cite: Aminobenzoic Acid Derivatives Obstruct Induced Fit in the Catalytic Center of the Ribosome. Acs Cent.Sci., 9, 2023
8BIM	Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ... Authors: Koziej, L, Glatt, S. Deposit date: 2022-11-02 Release date: 2023-08-16 Method: ELECTRON MICROSCOPY (2.04 Å) Cite: Modulation of translational decoding by m 6 A modification of mRNA. Nat Commun, 14, 2023
8BIL	Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site. Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ... Authors: Koziej, L, Glatt, S. Deposit date: 2022-11-02 Release date: 2023-08-16 Method: ELECTRON MICROSCOPY (2.04 Å) Cite: Modulation of translational decoding by m 6 A modification of mRNA. Nat Commun, 14, 2023
8CDR	Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin Descriptor: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... Authors: Milicevic, N, Jenner, L, Myasnikov, A, Yusupov, M, Yusupova, G. Deposit date: 2023-01-31 Release date: 2023-09-20 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (2.04 Å) Cite: mRNA reading frame maintenance during eukaryotic ribosome translocation. Nature, 625, 2024
3R9W	Crystal structure of Era in complex with MgGDPNP and nucleotides 1506-1542 of 16S ribosomal RNA Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, ACETATE ION, CALCIUM ION, ... Authors: Tu, C, Ji, X. Deposit date: 2011-03-26 Release date: 2011-06-22 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.05 Å) Cite: The Era GTPase recognizes the GAUCACCUCC sequence and binds helix 45 near the 3' end of 16S rRNA. Proc.Natl.Acad.Sci.USA, 108, 2011
8CEH	Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin Descriptor: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... Authors: Milicevic, N, Jenner, L, Myasnikov, A, Yusupov, M, Yusupova, G. Deposit date: 2023-02-01 Release date: 2023-09-20 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (2.05 Å) Cite: mRNA reading frame maintenance during eukaryotic ribosome translocation. Nature, 625, 2024
8CA7	Omadacycline and spectinomycin bound to the 30S ribosomal subunit head Descriptor: 16S rRNA, 30S ribosomal protein S7, MAGNESIUM ION, ... Authors: Paternoga, H, Crowe-McAuliffe, C, Wilson, D.N. Deposit date: 2023-01-24 Release date: 2023-08-02 Last modified: 2023-09-20 Method: ELECTRON MICROSCOPY (2.06 Å) Cite: Structural conservation of antibiotic interaction with ribosomes. Nat.Struct.Mol.Biol., 30, 2023
8CAI	Streptomycin and Hygromycin B bound to the 30S body Descriptor: 16S rRNA, 30S ribosomal protein S16, 30S ribosomal protein S2, ... Authors: Paternoga, H, Crowe-McAuliffe, C, Novacek, J, Wilson, D.N. Deposit date: 2023-01-24 Release date: 2023-07-26 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (2.08 Å) Cite: Structural conservation of antibiotic interaction with ribosomes. Nat.Struct.Mol.Biol., 30, 2023
8EMM	Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Watson, Z.L, Cate, J.H.D. Deposit date: 2022-09-28 Release date: 2023-05-31 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (2.1 Å) Cite: Atomistic simulations of the Escherichia coli ribosome provide selection criteria for translationally active substrates. Nat.Chem., 15, 2023
4YBB	High-resolution structure of the Escherichia coli ribosome Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, 1,4-DIAMINOBUTANE, ... Authors: Noeske, J, Wasserman, M.R, Terry, D.S, Altman, R.B, Blanchard, S.C, Cate, J.H.D. Deposit date: 2015-02-18 Release date: 2015-03-18 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.1 Å) Cite: High-resolution structure of the Escherichia coli ribosome. Nat.Struct.Mol.Biol., 22, 2015
8BGE	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ... Authors: Koziej, L, Glatt, S. Deposit date: 2022-10-27 Release date: 2023-08-16 Method: ELECTRON MICROSCOPY (2.11 Å) Cite: Modulation of translational decoding by m 6 A modification of mRNA. Nat Commun, 14, 2023
8CAZ	empty 30S head Descriptor: 16S rRNA, 30S ribosomal protein S2, 30S ribosomal protein S7, ... Authors: Paternoga, H, Beckert, B, Wilson, D.N. Deposit date: 2023-01-24 Release date: 2023-07-26 Last modified: 2023-09-20 Method: ELECTRON MICROSCOPY (2.11 Å) Cite: Structural conservation of antibiotic interaction with ribosomes. Nat.Struct.Mol.Biol., 30, 2023

 

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