PDB: 1333 件ウェブページステータス検索Chemie searchBIRD

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8B0X	Translating 70S ribosome in the unrotated state (P and E, tRNAs) 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Fromm, S.A, O'Connor, K.M, Purdy, M, Bhatt, P.R, Loughran, G, Atkins, J.F, Jomaa, A, Mattei, S. 登録日 2022-09-08 公開日 2022-11-30 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (1.55 Å) 主引用文献 The translating bacterial ribosome at 1.55 angstrom resolution generated by cryo-EM imaging services. Nat Commun, 14, 2023
8GLP	mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure) 分子名称: 1,4-DIAMINOBUTANE, 18S rRNA, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ... 著者 Holm, M, Natchiar, K.S, Rundlet, E.J, Myasnikov, A.G, Watson, Z.L, Altman, R.B, Blanchard, S.C. 登録日 2023-03-22 公開日 2023-04-19 最終更新日 2023-11-15 実験手法 ELECTRON MICROSCOPY (1.67 Å) 主引用文献 mRNA decoding in human is kinetically and structurally distinct from bacteria. Nature, 617, 2023
8CGJ	Streptomycin bound to the 30S body 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S16, ... 著者 Paternoga, H, Crowe-McAuliffe, C, Beckert, B, Wilson, D.N. 登録日 2023-02-05 公開日 2023-07-26 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (1.79 Å) 主引用文献 Structural conservation of antibiotic interaction with ribosomes. Nat.Struct.Mol.Biol., 30, 2023
8CF1	Tetracycline bound to the 30S head 分子名称: 16S rRNA, 30S ribosomal protein S2, 30S ribosomal protein S7, ... 著者 Paternoga, H, Crowe-McAuliffe, C, Beckert, B, Wilson, D.N. 登録日 2023-02-02 公開日 2023-07-26 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (1.82 Å) 主引用文献 Structural conservation of antibiotic interaction with ribosomes. Nat.Struct.Mol.Biol., 30, 2023
8FTO	E. coli 70S ribosome with an improved MS2 tag inserted in H98 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Nissley, A.J, Cate, J.H.D. 登録日 2023-01-12 公開日 2023-08-02 最終更新日 2023-11-15 実験手法 ELECTRON MICROSCOPY (1.85 Å) 主引用文献 Interactions between terminal ribosomal RNA helices stabilize the E. coli large ribosomal subunit. Rna, 29, 2023
1WF3	Crystal structure of GTP-binding protein TT1341 from Thermus thermophilus HB8 分子名称: GLYCEROL, GTP-binding protein, MAGNESIUM ION, ... 著者 Kawazoe, M, Hori-Takemoto, C, Kaminishi, T, Sekine, S, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2004-05-25 公開日 2004-11-25 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.88 Å) 主引用文献 Crystal structure of GTP-binding protein TT1341 from Thermus thermophilus HB8 To be Published
8CGI	Pentacycline TP038 bound to the 30S head 分子名称: 16S rRNA, 30S ribosomal protein S7, Large ribosomal subunit protein bL31A, ... 著者 Paternoga, H, Crowe-McAuliffe, C, Novacek, J, Wilson, D.N. 登録日 2023-02-04 公開日 2023-07-26 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (1.89 Å) 主引用文献 Structural conservation of antibiotic interaction with ribosomes. Nat.Struct.Mol.Biol., 30, 2023
3IEV	Crystal Structure of ERA in Complex with MgGNP and the 3' End of 16S rRNA 分子名称: 5'-R(P*AP*UP*CP*AP*CP*CP*UP*CP*CP*UP*UP*A)-3', GTP-binding protein era, MAGNESIUM ION, ... 著者 Tu, C, Ji, X. 登録日 2009-07-23 公開日 2009-08-25 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structure of ERA in complex with the 3' end of 16S rRNA: implications for ribosome biogenesis Proc.Natl.Acad.Sci.USA, 106, 2009
8AYE	E. coli 70S ribosome bound to thermorubin and fMet-tRNA 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Sanyal, S, Parajuli, N.P, Emmerich, A.G. 登録日 2022-09-02 公開日 2023-03-01 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (1.96 Å) 主引用文献 Antibiotic thermorubin tethers ribosomal subunits and impedes A-site interactions to perturb protein synthesis in bacteria. Nat Commun, 14, 2023
8CCS	80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... 著者 Milicevic, N, Jenner, L, Myasnikov, A, Yusupov, M, Yusupova, G. 登録日 2023-01-27 公開日 2023-09-20 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (1.97 Å) 主引用文献 mRNA reading frame maintenance during eukaryotic ribosome translocation. Nature, 625, 2024
7K00	Structure of the Bacterial Ribosome at 2 Angstrom Resolution 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Watson, Z.L, Ward, F.R, Meheust, R, Ad, O, Schepartz, A, Banfield, J.F, Cate, J.H.D. 登録日 2020-09-02 公開日 2020-09-23 最終更新日 2023-11-15 実験手法 ELECTRON MICROSCOPY (1.98 Å) 主引用文献 Structure of the bacterial ribosome at 2 angstrom resolution. Elife, 9, 2020
8QOA	Structure of SecM-stalled Escherichia coli 70S ribosome 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S16, ... 著者 Gersteuer, F, Morici, M, Wilson, D.N. 登録日 2023-09-28 公開日 2024-03-20 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2 Å) 主引用文献 The SecM arrest peptide traps a pre-peptide bond formation state of the ribosome. Nat Commun, 15, 2024
2CXC	Crystal structure of archaeal transcription termination factor NusA 分子名称: NusA 著者 Shibata, R, Bessho, Y, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2005-06-28 公開日 2005-12-28 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crystal structure and RNA-binding analysis of the archaeal transcription factor NusA Biochem.Biophys.Res.Commun., 355, 2007
8G6W	Structure of WT E.coli 70S ribosome complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site ortho-aminobenzoic acid charged NH-tRNAPhe 分子名称: 16S rRNA, 2-AMINO-BENZAMIDE, 23S rRNA, ... 著者 Majumdar, C, Cate, J.H.D. 登録日 2023-02-16 公開日 2023-04-05 最終更新日 2023-11-15 実験手法 ELECTRON MICROSCOPY (2.02 Å) 主引用文献 Aminobenzoic Acid Derivatives Obstruct Induced Fit in the Catalytic Center of the Ribosome. Acs Cent.Sci., 9, 2023
8BIM	Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site 分子名称: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ... 著者 Koziej, L, Glatt, S. 登録日 2022-11-02 公開日 2023-08-16 実験手法 ELECTRON MICROSCOPY (2.04 Å) 主引用文献 Modulation of translational decoding by m 6 A modification of mRNA. Nat Commun, 14, 2023
8BIL	Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site. 分子名称: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ... 著者 Koziej, L, Glatt, S. 登録日 2022-11-02 公開日 2023-08-16 実験手法 ELECTRON MICROSCOPY (2.04 Å) 主引用文献 Modulation of translational decoding by m 6 A modification of mRNA. Nat Commun, 14, 2023
8CDR	Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... 著者 Milicevic, N, Jenner, L, Myasnikov, A, Yusupov, M, Yusupova, G. 登録日 2023-01-31 公開日 2023-09-20 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.04 Å) 主引用文献 mRNA reading frame maintenance during eukaryotic ribosome translocation. Nature, 625, 2024
3R9W	Crystal structure of Era in complex with MgGDPNP and nucleotides 1506-1542 of 16S ribosomal RNA 分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, ACETATE ION, CALCIUM ION, ... 著者 Tu, C, Ji, X. 登録日 2011-03-26 公開日 2011-06-22 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 The Era GTPase recognizes the GAUCACCUCC sequence and binds helix 45 near the 3' end of 16S rRNA. Proc.Natl.Acad.Sci.USA, 108, 2011
8CEH	Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... 著者 Milicevic, N, Jenner, L, Myasnikov, A, Yusupov, M, Yusupova, G. 登録日 2023-02-01 公開日 2023-09-20 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.05 Å) 主引用文献 mRNA reading frame maintenance during eukaryotic ribosome translocation. Nature, 625, 2024
8CA7	Omadacycline and spectinomycin bound to the 30S ribosomal subunit head 分子名称: 16S rRNA, 30S ribosomal protein S7, MAGNESIUM ION, ... 著者 Paternoga, H, Crowe-McAuliffe, C, Wilson, D.N. 登録日 2023-01-24 公開日 2023-08-02 最終更新日 2023-09-20 実験手法 ELECTRON MICROSCOPY (2.06 Å) 主引用文献 Structural conservation of antibiotic interaction with ribosomes. Nat.Struct.Mol.Biol., 30, 2023
8CAI	Streptomycin and Hygromycin B bound to the 30S body 分子名称: 16S rRNA, 30S ribosomal protein S16, 30S ribosomal protein S2, ... 著者 Paternoga, H, Crowe-McAuliffe, C, Novacek, J, Wilson, D.N. 登録日 2023-01-24 公開日 2023-07-26 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.08 Å) 主引用文献 Structural conservation of antibiotic interaction with ribosomes. Nat.Struct.Mol.Biol., 30, 2023
8EMM	Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Watson, Z.L, Cate, J.H.D. 登録日 2022-09-28 公開日 2023-05-31 最終更新日 2023-11-15 実験手法 ELECTRON MICROSCOPY (2.1 Å) 主引用文献 Atomistic simulations of the Escherichia coli ribosome provide selection criteria for translationally active substrates. Nat.Chem., 15, 2023
4YBB	High-resolution structure of the Escherichia coli ribosome 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, 1,4-DIAMINOBUTANE, ... 著者 Noeske, J, Wasserman, M.R, Terry, D.S, Altman, R.B, Blanchard, S.C, Cate, J.H.D. 登録日 2015-02-18 公開日 2015-03-18 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 High-resolution structure of the Escherichia coli ribosome. Nat.Struct.Mol.Biol., 22, 2015
8BGE	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation 分子名称: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ... 著者 Koziej, L, Glatt, S. 登録日 2022-10-27 公開日 2023-08-16 実験手法 ELECTRON MICROSCOPY (2.11 Å) 主引用文献 Modulation of translational decoding by m 6 A modification of mRNA. Nat Commun, 14, 2023
8CAZ	empty 30S head 分子名称: 16S rRNA, 30S ribosomal protein S2, 30S ribosomal protein S7, ... 著者 Paternoga, H, Beckert, B, Wilson, D.N. 登録日 2023-01-24 公開日 2023-07-26 最終更新日 2023-09-20 実験手法 ELECTRON MICROSCOPY (2.11 Å) 主引用文献 Structural conservation of antibiotic interaction with ribosomes. Nat.Struct.Mol.Biol., 30, 2023

 

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