PDB: 176 件ウェブページステータス検索Chemie searchBIRD

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2OXM	Crystal structure of a UNG2/modified DNA complex that represent a stabilized short-lived extrahelical state in ezymatic DNA base flipping 分子名称: DNA (5'-D(*AP*AP*AP*GP*AP*TP*(4MF)P*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*TP*AP*TP*CP*TP*T)-3'), Uracil-DNA glycosylase 著者 Bianchet, M.A, Krosky, D.J, Stivers, J.T, Amzel, L.M. 登録日 2007-02-20 公開日 2007-10-30 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Enzymatic capture of an extrahelical thymine in the search for uracil in DNA. Nature, 449, 2007
2J8X	Epstein-Barr virus uracil-DNA glycosylase in complex with Ugi from PBS-2 分子名称: URACIL-DNA GLYCOSYLASE, URACIL-DNA GLYCOSYLASE INHIBITOR, UREA 著者 Geoui, T, Buisson, M, Tarbouriech, N, Burmeister, W.P. 登録日 2006-10-31 公開日 2006-12-13 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 New Insights on the Role of the Gamma-Herpesvirus Uracil-DNA Glycosylase Leucine Loop Revealed by the Structure of the Epstein-Barr Virus Enzyme in Complex with an Inhibitor Protein. J.Mol.Biol., 366, 2007
2HXM	Complex of UNG2 and a small Molecule synthetic Inhibitor 分子名称: 4-[(1E,7E)-8-(2,6-DIOXO-1,2,3,6-TETRAHYDROPYRIMIDIN-4-YL)-3,6-DIOXA-2,7-DIAZAOCTA-1,7-DIEN-1-YL]BENZOIC ACID, Uracil-DNA glycosylase 著者 Bianchet, M.A, Krosky, D.J, Ghung, S, Seiple, L, Amzel, L.M, Stivers, J.T. 登録日 2006-08-03 公開日 2006-12-05 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.3 Å) 主引用文献 Mimicking damaged DNA with a small molecule inhibitor of human UNG2. Nucleic Acids Res., 34, 2006
2DP6	Crystal structure of uracil-DNA glycosylase in complex with AP:C containing DNA 分子名称: 5'-D(*AP*TP*GP*TP*TP*GP*CP*(D1P)P*TP*TP*AP*GP*TP*CP*C)-3', 5'-D(*GP*GP*AP*CP*TP*AP*AP*CP*GP*CP*AP*AP*CP*A)-3', DIHYDROGENPHOSPHATE ION, ... 著者 Kosaka, H, Nakagawa, N, Masui, R, Kuramitsu, S, Hoseki, J, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2006-05-07 公開日 2007-05-22 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structure of Family 5 Uracil-DNA Glycosylase Bound to DNA Reveals Insights into the Mechanism for Substrate Recognition and Catalysis To be Published
2DEM	Crystal structure of Uracil-DNA glycosylase in complex with AP:A containing DNA 分子名称: 5'-D(*AP*TP*GP*TP*TP*GP*CP*(D1P)P*TP*TP*AP*GP*TP*CP*C)-3', 5'-D(*GP*GP*AP*CP*TP*AP*AP*AP*GP*CP*AP*AP*CP*A)-3', DIHYDROGENPHOSPHATE ION, ... 著者 Kosaka, H, Nakagawa, N, Masui, R, Hoseki, J, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2006-02-13 公開日 2007-04-24 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Crystal structure of family 5 uracil-DNA glycosylase bound to DNA. J.Mol.Biol., 373, 2007
2DDG	Crystal structure of uracil-DNA glycosylase in complex with AP:G containing DNA 分子名称: 5'-D(*AP*TP*GP*TP*TP*GP*CP*(D1P)P*TP*TP*AP*GP*TP*CP*C)-3', 5'-D(*GP*GP*AP*CP*TP*AP*AP*GP*GP*CP*AP*AP*CP*A)-3', ACETATE ION, ... 著者 Kosaka, H, Nakagawa, N, Masui, R, Hoseki, J, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2006-01-28 公開日 2007-02-13 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Crystal structure of family 5 uracil-DNA glycosylase bound to DNA. J.Mol.Biol., 373, 2007
2C56	A comparative study of uracil DNA glycosylases from human and herpes simplex virus type 1 分子名称: URACIL DNA GLYCOSYLASE, beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose 著者 Krusong, K, Carpenter, E.P, Bellamy, S.R.W, Savva, R, Baldwin, G.S. 登録日 2005-10-26 公開日 2005-11-28 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 A Comparative Study of Uracil-DNA Glycosylases from Human and Herpes Simplex Virus Type 1. J.Biol.Chem., 281, 2006
2C53	A comparative study of uracil DNA glycosylases from human and herpes simplex virus type 1 分子名称: 2'-DEOXYURIDINE, GLYCEROL, URACIL DNA GLYCOSYLASE 著者 Krusong, K, Carpenter, E.P, Bellmy, S.R.W, Savva, R, Baldwin, G.S. 登録日 2005-10-25 公開日 2005-11-28 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 A Comparative Study of Uracil-DNA Glycosylases from Human and Herpes Simplex Virus Type 1. J.Biol.Chem., 281, 2006
2D3Y	Crystal structure of uracil-DNA glycosylase from Thermus Thermophilus HB8 分子名称: 2'-DEOXYURIDINE-5'-MONOPHOSPHATE, ACETATE ION, IRON/SULFUR CLUSTER, ... 著者 Kosaka, H, Nakagawa, N, Masui, R, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2005-10-04 公開日 2006-10-17 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 Crystal structure of family 5 uracil-DNA glycosylase bound to DNA. J.Mol.Biol., 373, 2007
2C2P	The crystal structure of mismatch specific uracil-DNA glycosylase (MUG) from Deinococcus radiodurans 分子名称: ACETATE ION, G/U MISMATCH-SPECIFIC DNA GLYCOSYLASE 著者 Moe, E, Leiros, I, Smalas, A.O, McSweeney, S. 登録日 2005-09-29 公開日 2005-10-18 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 The Crystal Structure of Mismatch Specific Uracil-DNA Glycosylase (Mug) from Deinococcus Radiodurans Reveals a Novel Catalytic Residue and Broad Substrate Specificity J.Biol.Chem., 281, 2006
2C2Q	The crystal structure of mismatch specific uracil-DNA glycosylase (MUG) from Deinococcus radiodurans. Inactive mutant Asp93Ala. 分子名称: ACETATE ION, G/U MISMATCH-SPECIFIC DNA GLYCOSYLASE 著者 Moe, E, Leiros, I, Smalas, A.O, McSweeney, S. 登録日 2005-09-29 公開日 2005-10-18 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 The Crystal Structure of Mismatch Specific Uracil-DNA Glycosylase (Mug) from Deinococcus Radiodurans Reveals a Novel Catalytic Residue and Broad Substrate Specificity J.Biol.Chem., 281, 2006
2D07	Crystal Structure of SUMO-3-modified Thymine-DNA Glycosylase 分子名称: G/T mismatch-specific thymine DNA glycosylase, Ubiquitin-like protein SMT3B 著者 Baba, D, Maita, N, Jee, J.G, Uchimura, Y, Saitoh, H, Sugasawa, K, Hanaoka, F, Tochio, H, Hiroaki, H, Shirakawa, M. 登録日 2005-07-26 公開日 2006-06-06 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Crystal Structure of SUMO-3-modified Thymine-DNA Glycosylase J.Mol.Biol., 359, 2006
2BOO	The crystal structure of Uracil-DNA N-Glycosylase (UNG) from Deinococcus radiodurans. 分子名称: NITRATE ION, URACIL-DNA GLYCOSYLASE 著者 Leiros, I, Moe, E, Smalas, A.O, McSweeney, S. 登録日 2005-04-13 公開日 2005-07-27 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structure of the Uracil-DNA N-Glycosylase (Ung) from Deinococcus Radiodurans. Acta Crystallogr.,Sect.D, 61, 2005
1WYW	Crystal Structure of SUMO1-conjugated thymine DNA glycosylase 分子名称: CHLORIDE ION, G/T mismatch-specific thymine DNA glycosylase, MAGNESIUM ION, ... 著者 Baba, D, Maita, N, Jee, J.G, Uchimura, Y, Saitoh, H, Sugasawa, K, Hanaoka, F, Tochio, H, Hiroaki, H, Shirakawa, M. 登録日 2005-02-17 公開日 2005-06-21 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Crystal structure of thymine DNA glycosylase conjugated to SUMO-1. Nature, 435, 2005
1YUO	Optimisation of the surface electrostatics as a strategy for cold adaptation of uracil-DNA N-glycosylase (UNG)from atlantic cod (Gadus morhua) 分子名称: Uracil-DNA glycosylase 著者 Moe, E, Leiros, I, Riise, E.K, Olufsen, M, Lanes, O, Smalas, A.O, Willassen, N.P. 登録日 2005-02-14 公開日 2005-03-01 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Optimisation of the surface electrostatics as a strategy for cold adaptation of uracil-DNA N-glycosylase (UNG) from Atlantic cod (Gadus morhua) J.Mol.Biol., 343, 2004
1VK2	Crystal structure of Uracil-DNA glycosylase (TM0511) from Thermotoga maritima at 1.90 A resolution 分子名称: IRON/SULFUR CLUSTER, UNKNOWN LIGAND, Uracil-DNA glycosylase TM0511 著者 Joint Center for Structural Genomics (JCSG) 登録日 2004-04-16 公開日 2004-05-04 最終更新日 2023-01-25 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Crystal structure of Uracil-DNA glycosylase (TM0511) from Thermotoga maritima at 1.90 A resolution To be published
1Q3F	Uracil DNA glycosylase bound to a cationic 1-aza-2'-deoxyribose-containing DNA 分子名称: 5'-D(*AP*AP*AP*GP*AP*TP*AP*AP*CP*A)-3', 5'-D(*TP*GP*TP*(NRI)P*AP*TP*CP*TP*T)-3', PHOSPHATE ION, ... 著者 Bianchet, M.A, Seiple, L.A, Jiang, Y.L, Ichikawa, Y, Amzel, L.M, Stivers, J.T. 登録日 2003-07-29 公開日 2004-03-23 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Electrostatic guidance of glycosyl cation migration along the reaction coordinate of uracil DNA glycosylase. Biochemistry, 42, 2003
1OKB	crystal structure of Uracil-DNA glycosylase from Atlantic cod (Gadus morhua) 分子名称: CHLORIDE ION, GLYCEROL, URACIL-DNA GLYCOSYLASE 著者 Leiros, I, Moe, E, Lanes, O, Smalas, A.O, Willassen, N.P. 登録日 2003-07-21 公開日 2004-04-05 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 The Crystal Structure of Uracil-DNA Glycosylase from Atlantic Cod (Gadus Morhua) Reveals Cold-Adaptation Features Acta Crystallogr.,Sect.D, 59, 2003
1UI1	Crystal Structure Of Uracil-DNA Glycosylase From Thermus Thermophilus HB8 分子名称: IRON/SULFUR CLUSTER, Uracil-DNA Glycosylase 著者 Hoseki, J, Okamoto, A, Masui, R, Shibata, T, Inoue, Y, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2003-07-14 公開日 2003-10-14 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Crystal Structure of a Family 4 Uracil-DNA Glycosylase from Thermus thermophilus HB8 J.Mol.Biol., 333, 2003
1UI0	Crystal Structure Of Uracil-DNA Glycosylase From Thermus Thermophilus HB8 分子名称: IRON/SULFUR CLUSTER, SULFATE ION, URACIL, ... 著者 Hoseki, J, Okamoto, A, Masui, R, Shibata, T, Inoue, Y, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2003-07-14 公開日 2003-10-14 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Crystal Structure of a Family 4 Uracil-DNA Glycosylase from Thermus thermophilus HB8 J.Mol.Biol., 333, 2003
1OE4	Xenopus SMUG1, an anti-mutator uracil-DNA Glycosylase 分子名称: 5'-D(*CP*CP*CP*GP*TP*GP*AP*GP*TP*CP*CP*G)-3', 5'-D(*CP*GP*GP*AP*CP*TP*3DR*AP*CP*GP*GP*G)-3', GLYCEROL, ... 著者 Wibley, J.E.A, Pearl, L.H. 登録日 2003-03-19 公開日 2003-07-11 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structure and Specificity of the Vertebrate Anti-Mutator Uracil-DNA Glycosylase Smug1 Mol.Cell, 11, 2003
1OE5	Xenopus SMUG1, an anti-mutator uracil-DNA Glycosylase 分子名称: 2'-DEOXYURIDINE, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, 5'-D(*CP*3DRP*GP*GP*AP*CP*TP*3DRP*AP*CP*GP*GP*GP)-3', ... 著者 Wibley, J.E.A, Pearl, L.H. 登録日 2003-03-19 公開日 2003-07-11 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structure and Specificity of the Vertebrate Anti-Mutator Uracil-DNA Glycosylase Smug1 Mol.Cell, 11, 2003
1OE6	Xenopus SMUG1, an anti-mutator uracil-DNA Glycosylase 分子名称: 5'-D(*CP*CP*CP*GP*TP*GP*AP*GP*TP*CP*CP*G)-3', 5'-D(*CP*GP*GP*AP*CP*TP*3DRP*AP*CP*GP*GP*G)-3', 5-HYDROXYMETHYL URACIL, ... 著者 Wibley, J.E.A, Pearl, L.H. 登録日 2003-03-19 公開日 2003-07-11 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (2.65 Å) 主引用文献 Structure and Specificity of the Vertebrate Anti-Mutator Uracil-DNA Glycosylase Smug1 Mol.Cell, 11, 2003
1MWJ	Crystal Structure of a MUG-DNA pseudo substrate complex 分子名称: 5'-D(*CP*GP*CP*GP*A*GP*(DU)P*TP*CP*GP*CP*G)-3', G/U mismatch-specific DNA glycosylase 著者 Barrett, T.E, Scharer, O, Savva, R, Brown, T, Jiricny, J, Verdine, G.L, Pearl, L.H. 登録日 2002-09-30 公開日 2002-10-11 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.85 Å) 主引用文献 Crystal Structure of a thwarted mismatch glycosylase DNA repair complex Embo J., 18, 1999
1MWI	Crystal structure of a MUG-DNA product complex 分子名称: 5'-D(*CP*GP*CP*GP*AP*GP*(AAB)P*TP*CP*GP*CP*G)-3', G/U mismatch-specific DNA glycosylase 著者 Barrett, T.E, Savva, R, Panayotou, G, Brown, T, Barlow, T, Jiricny, J, Pearl, L.H. 登録日 2002-09-30 公開日 2002-10-04 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Crystal structure of a G:T/U mismatch-specific DNA glycosylase: mismatch recognition by complementary-strand interactions. Cell(Cambridge,Mass.), 92, 1998

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