Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6J1A
DownloadVisualize
BU of 6j1a by Molmil
Photoswitchable fluorescent protein Gamillus, off-state
Descriptor: CHLORIDE ION, GLYCEROL, Green fluorescent protein, ...
Authors:Nakashima, R, Sakurai, K, shinoda, H, Matsuda, T, Nagai, T.
Deposit date:2018-12-28
Release date:2019-11-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Acid-Tolerant Reversibly Switchable Green Fluorescent Protein for Super-resolution Imaging under Acidic Conditions.
Cell Chem Biol, 26, 2019
6ITC
DownloadVisualize
BU of 6itc by Molmil
Structure of a substrate engaged SecA-SecY protein translocation machine
Descriptor: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, ...
Authors:Ma, C.Y, Wu, X.F, Sun, D.J, Park, E.Y, Rapoport, T.A, Gao, N, Long, L.
Deposit date:2018-11-21
Release date:2019-06-12
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (3.45 Å)
Cite:Structure of the substrate-engaged SecA-SecY protein translocation machine.
Nat Commun, 10, 2019
6IR7
DownloadVisualize
BU of 6ir7 by Molmil
Green fluorescent protein variant GFPuv with the modification to 6-hydroxynorleucine at the C-terminus
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 6-HYDROXY-L-NORLEUCINE, Green fluorescent protein, ...
Authors:Nakatani, T, Yasui, N, Yamashita, A.
Deposit date:2018-11-12
Release date:2019-04-03
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.277 Å)
Cite:Specific modification at the C-terminal lysine residue of the green fluorescent protein variant, GFPuv, expressed in Escherichia coli.
Sci Rep, 9, 2019
6IR6
DownloadVisualize
BU of 6ir6 by Molmil
Green fluorescent protein variant GFPuv with the native lysine residue at the C-terminus
Descriptor: Green fluorescent protein, SULFATE ION
Authors:Nakatani, T, Yasui, N, Yamashita, A.
Deposit date:2018-11-12
Release date:2019-04-03
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.642 Å)
Cite:Specific modification at the C-terminal lysine residue of the green fluorescent protein variant, GFPuv, expressed in Escherichia coli.
Sci Rep, 9, 2019
6IR2
DownloadVisualize
BU of 6ir2 by Molmil
Crystal structure of red fluorescent protein mCherry complexed with the nanobody LaM2 at 1.4 Angstron resolution
Descriptor: MCherry fluorescent protein, mCherry's nanobody LaM2
Authors:Ding, Y, Wang, Z.Y, Hu, R.T, Chen, X.
Deposit date:2018-11-09
Release date:2019-11-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.393 Å)
Cite:Structural insights into the binding of nanobodies LaM2 and LaM4 to the red fluorescent protein mCherry.
Protein Sci., 30, 2021
6IR1
DownloadVisualize
BU of 6ir1 by Molmil
Crystal structure of red fluorescent protein mCherry complexed with the nanobody LaM4 at 1.9 Angstron resolution
Descriptor: MCherry fluorescent protein, mCherry's nanobody LaM4
Authors:Ding, Y, Wang, Z.Y, Hu, R.T, Chen, X.
Deposit date:2018-11-09
Release date:2019-11-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.919 Å)
Cite:Structural insights into the binding of nanobodies LaM2 and LaM4 to the red fluorescent protein mCherry.
Protein Sci., 30, 2021
6MZ3
DownloadVisualize
BU of 6mz3 by Molmil
mCherry pH sensitive mutant - M66T (mCherryTYG)
Descriptor: PAmCherry1 protein
Authors:Haynes, E.P, Tantama, M.
Deposit date:2018-11-03
Release date:2019-10-09
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.088 Å)
Cite:Quantifying Acute Fuel and Respiration Dependent pH Homeostasis in Live Cells Using the mCherryTYG Mutant as a Fluorescence Lifetime Sensor.
Anal.Chem., 91, 2019
6MYB
DownloadVisualize
BU of 6myb by Molmil
Room-temperature structure of deuterated Tetdron (isomorph 1)
Descriptor: Photoswitchable protein Tetdron
Authors:Dajnowicz, S, Kovalevsky, A.
Deposit date:2018-11-01
Release date:2019-11-06
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.899 Å)
Cite:Room-temperature in crystallo photo-induced deprotonation and tetramerization of photo-switchable protein Padron2.0
To Be Published
6MYC
DownloadVisualize
BU of 6myc by Molmil
Room-temperature structure of deuterated Tetdron (isomorph 2)
Descriptor: Photoswitchable protein Tetdron
Authors:Dajnowicz, S, Kovalevsky, A.
Deposit date:2018-11-01
Release date:2019-11-06
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.396 Å)
Cite:Room-temperature in crystallo photo-induced deprotonation and tetramerization of photo-switchable protein Padron2.0
To Be Published
6MXW
DownloadVisualize
BU of 6mxw by Molmil
Room-temperature structure of hydrogenated Tetdron (isomorph 1)
Descriptor: Photoswitchable protein Tetdron
Authors:Dajnowicz, S, Kovalevsky, A.
Deposit date:2018-10-31
Release date:2019-11-06
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.049 Å)
Cite:Room-temperature in crystallo photo-induced deprotonation and tetramerization of photo-switchable protein Padron2.0
To Be Published
6MWQ
DownloadVisualize
BU of 6mwq by Molmil
Single particle cryoEM structure of a DARPin-aldolase platform in complex with GFP
Descriptor: DARPin, Muscle-type aldolase chimeric fusion, Green fluorescent protein
Authors:Weaver, S.J, Yao, Q.
Deposit date:2018-10-30
Release date:2018-11-21
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Fusion of DARPin to Aldolase Enables Visualization of Small Protein by Cryo-EM.
Structure, 27, 2019
6HUT
DownloadVisualize
BU of 6hut by Molmil
GFP8 - a stabilized variant of cycle-3 GFP
Descriptor: Green fluorescent protein
Authors:Petek, M, Rangel Pereira, M.
Deposit date:2018-10-09
Release date:2020-01-22
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.29 Å)
Cite:GFP8 - a stabilized variant of cycle-3 GFP
To Be Published
6HR1
DownloadVisualize
BU of 6hr1 by Molmil
Crystal structure of the YFPnano fusion protein
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, GLYCEROL, ...
Authors:Benoit, R.M.
Deposit date:2018-09-26
Release date:2020-04-08
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.901 Å)
Cite:Chimeric single alpha-helical domains as rigid fusion protein connections for protein nanotechnology and structural biology.
Structure, 2021
6MKS
DownloadVisualize
BU of 6mks by Molmil
Cryo-EM structure of NLRC4-CARD filament
Descriptor: Chimera protein of NLR family CARD domain-containing protein 4 and EGFP
Authors:Zheng, W, Matyszewski, M, Sohn, J, Egelman, E.H.
Deposit date:2018-09-26
Release date:2018-11-07
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Cryo-EM structure of the NLRC4CARDfilament provides insights into how symmetric and asymmetric supramolecular structures drive inflammasome assembly.
J. Biol. Chem., 293, 2018
6MDR
DownloadVisualize
BU of 6mdr by Molmil
Cryo-EM structure of the Ceru+32/GFP-17 protomer
Descriptor: Ceru+32, GFP-17
Authors:Simon, A.J, Zhou, Y, Ramasubramani, V, Glaser, J, Pothukuchy, A, Golihar, J, Gerberich, J.C, Leggere, J.C, Morrow, B.R, Jung, C, Glotzer, S.C, Taylor, D.W, Ellington, A.D.
Deposit date:2018-09-05
Release date:2019-01-23
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.47 Å)
Cite:Supercharging enables organized assembly of synthetic biomolecules.
Nat Chem, 11, 2019
6MB2
DownloadVisualize
BU of 6mb2 by Molmil
Cryo-EM structure of the PYD filament of AIM2
Descriptor: Green fluorescent protein, Interferon-inducible protein AIM2
Authors:Lu, A, Li, Y, Wu, H.
Deposit date:2018-08-29
Release date:2018-09-05
Method:ELECTRON MICROSCOPY (5 Å)
Cite:Plasticity in PYD assembly revealed by cryo-EM structure of the PYD filament of AIM2.
Cell Discov, 1, 2015
6MAS
DownloadVisualize
BU of 6mas by Molmil
X-ray Structure of Branchiostoma floridae fluorescent protein lanFP10G
Descriptor: GLYCEROL, Uncharacterized protein
Authors:Muslinkina, L, Pletneva, N, Pletnev, V, Pletnev, S.
Deposit date:2018-08-28
Release date:2019-03-13
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structural Factors Enabling Successful GFP-Like Proteins with Alanine as the Third Chromophore-Forming Residue.
J. Mol. Biol., 431, 2019
6M9Z
DownloadVisualize
BU of 6m9z by Molmil
X-ray Structure of Branchiostoma floridae fluorescent protein lanFP6G
Descriptor: Fluorescent protein lanFP6G
Authors:Muslinkina, L, Pletneva, N, Pletnev, V, Pletnev, S.
Deposit date:2018-08-24
Release date:2019-04-03
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structural Factors Enabling Successful GFP-Like Proteins with Alanine as the Third Chromophore-Forming Residue.
J. Mol. Biol., 431, 2019
6M9Y
DownloadVisualize
BU of 6m9y by Molmil
X-ray Structure of Branchiostoma floridae fluorescent protein lanFP6A
Descriptor: Fluorescent protein lanFP6A
Authors:Muslinkina, L, Pletneva, N, Pletnev, V, Pletnev, S.
Deposit date:2018-08-24
Release date:2019-03-13
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structural Factors Enabling Successful GFP-Like Proteins with Alanine as the Third Chromophore-Forming Residue.
J. Mol. Biol., 431, 2019
6M9X
DownloadVisualize
BU of 6m9x by Molmil
X-ray Structure of Branchiostoma floridae fluorescent protein lanFP10A
Descriptor: Fluorescent protein lanFP10A
Authors:Muslinkina, L, Pletneva, N, Pletnev, V, Pletnev, S.
Deposit date:2018-08-24
Release date:2019-03-13
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Structural Factors Enabling Successful GFP-Like Proteins with Alanine as the Third Chromophore-Forming Residue.
J. Mol. Biol., 431, 2019
6EFR
DownloadVisualize
BU of 6efr by Molmil
Crystal Structure of iNicSnFR 1.0
Descriptor: iNicSnFR 1.0, a genetically encoded nicotine biosensor,Green fluorescent protein
Authors:Shivange, A.V, Borden, P.M.
Deposit date:2018-08-17
Release date:2019-01-23
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Nicotinic Drugs in the Endoplasmic Reticulum: Beginning the Inside-out Pathway of Addiction and Therapy
J.Gen.Physiol., 2019
6AA2
DownloadVisualize
BU of 6aa2 by Molmil
X-ray structure of ReQy1 (oxidized form)
Descriptor: Green fluorescent protein
Authors:Sugiura, K, Yasuda, A, Tabushi, N, Tanaka, H, Kurisu, G, Hisabori, T.
Deposit date:2018-07-17
Release date:2019-05-29
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Multicolor redox sensor proteins can visualize redox changes in various compartments of the living cell.
Biochim Biophys Acta Gen Subj, 1863, 2019
6AA7
DownloadVisualize
BU of 6aa7 by Molmil
Fluorescent protein from Acropora digitifera
Descriptor: Fluorescent protein
Authors:Kim, S.E, Hwang, K.Y, Nam, K.H.
Deposit date:2018-07-17
Release date:2018-08-22
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Spectral and structural analysis of a red fluorescent protein from Acropora digitifera.
Protein Sci., 28, 2019
6AA6
DownloadVisualize
BU of 6aa6 by Molmil
X-ray structure of ReQy1 (reduced form)
Descriptor: Green fluorescent protein
Authors:Kurisu, G, Yasuda, A, Tabushi, N, Tanaka, H.
Deposit date:2018-07-17
Release date:2019-05-29
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Multicolor redox sensor proteins can visualize redox changes in various compartments of the living cell.
Biochim Biophys Acta Gen Subj, 1863, 2019
6H01
DownloadVisualize
BU of 6h01 by Molmil
Crystal structure of a domain-swapped dark-state sfGFP containing the unnatural amino acid ortho-nitrobenzyl-tyrosine (ONBY) at residue 66
Descriptor: Green fluorescent protein
Authors:Kesgin-Schaefer, S, Tidow, H.
Deposit date:2018-07-06
Release date:2019-04-24
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.776 Å)
Cite:Crystal structure of a domain-swapped photoactivatable sfGFP variant provides evidence for GFP folding pathway.
Febs J., 286, 2019

220113

PDB entries from 2024-05-22

PDB statisticsPDBj update infoContact PDBjnumon