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4IOB
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BU of 4iob by Molmil
Crystal structure of the GGDEF domain of PA1120 (YfiN or TpbB) from Pseudomonas aeruginosa at 2.7 Ang.
Descriptor: Diguanylate cyclase TpbB, GLYCEROL, TERTIARY-BUTYL ALCOHOL
Authors:Giardina, G, Cutruzzola, F.
Deposit date:2013-01-07
Release date:2013-12-04
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.78 Å)
Cite:Investigating the Allosteric Regulation of YfiN from Pseudomonas aeruginosa: Clues from the Structure of the Catalytic Domain.
Plos One, 8, 2013
8WCN
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BU of 8wcn by Molmil
Cryo-EM structure of PAO1-ImcA with GMPCPP
Descriptor: Diguanylate cyclase, MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER
Authors:Zhan, X.L, Zhang, K, Wang, C.C, Fan, Q, Tang, X.J, Zhang, X, Wang, K, Fu, Y, Liang, H.H.
Deposit date:2023-09-13
Release date:2024-03-13
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:A c-di-GMP signaling module controls responses to iron in Pseudomonas aeruginosa.
Nat Commun, 15, 2024
4URS
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BU of 4urs by Molmil
Crystal Structure of GGDEF domain from T.maritima
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), DIGUANYLATE CYCLASE, ...
Authors:Deepthi, A, Liew, C.W, Liang, Z.X, Swaminathan, K, Lescar, J.
Deposit date:2014-07-02
Release date:2014-10-08
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Structure of a Diguanylate Cyclase from Thermotoga Maritima: Insights Into Activation, Feedback Inhibition and Thermostability
Plos One, 9, 2014
3TVK
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BU of 3tvk by Molmil
Diguanylate cyclase domain of DgcZ
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), D(-)-TARTARIC ACID, Diguanylate cyclase DgcZ, ...
Authors:Zaehringer, F, Schirmer, T.
Deposit date:2011-09-20
Release date:2012-10-03
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure and signaling mechanism of a zinc-sensory diguanylate cyclase.
Structure, 21, 2013
6KHU
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BU of 6khu by Molmil
The crystal structure of a DGC protein from Thermotoga maritima
Descriptor: Diguanylate cyclase/phosphodiesterase-domain containing protein, ZINC ION
Authors:Been, K.W, Yoon, H.J, Lee, H.H.
Deposit date:2019-07-16
Release date:2020-07-22
Method:X-RAY DIFFRACTION (2.098 Å)
Cite:Crystal structure of a DGC protein from Thermotoga maritima
To Be Published
3EZU
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BU of 3ezu by Molmil
Crystal structure of multidomain protein of unknown function with GGDEF-domain (NP_951600.1) from GEOBACTER SULFURREDUCENS at 1.95 A resolution
Descriptor: 1,2-ETHANEDIOL, GGDEF domain protein, UNKNOWN LIGAND
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2008-10-23
Release date:2008-11-18
Last modified:2023-02-01
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of multidomain protein of unknown function with GGDEF-domain (NP_951600.1) from GEOBACTER SULFURREDUCENS at 1.95 A resolution
To be published
5EUH
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BU of 5euh by Molmil
Crystal structure of the c-di-GMP-bound GGDEF domain of P. fluorescens GcbC
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), Putative GGDEF domain membrane protein, SULFATE ION
Authors:Giglio, K.M, Cooley, R.B, Sondermann, H.
Deposit date:2015-11-18
Release date:2015-12-30
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.989 Å)
Cite:Contribution of Physical Interactions to Signaling Specificity between a Diguanylate Cyclase and Its Effector.
Mbio, 6, 2015
3MTK
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BU of 3mtk by Molmil
X-Ray Structure of Diguanylate cyclase/phosphodiesterase from Caldicellulosiruptor saccharolyticus, Northeast Structural Genomics Consortium Target ClR27C
Descriptor: Diguanylate cyclase/phosphodiesterase
Authors:Kuzin, A, Abashidze, M, Seetharaman, J, Sahdev, S, Xiao, R, Ciccosanti, C, Wang, D, Everett, J.K, Nair, R, Acton, T.B, Rost, B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2010-04-30
Release date:2010-06-02
Last modified:2019-07-17
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Northeast Structural Genomics Consortium Target ClR27C
To be Published
4YME
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BU of 4yme by Molmil
Crystal structure of a sensory box/GGDEF family protein (CC_0091) from Caulobacter crescentus CB15 at 1.40 A resolution (PSI Community Target, Shapiro)
Descriptor: sensory box/GGDEF family protein
Authors:Joint Center for Structural Genomics (JCSG), Shapiro, L.
Deposit date:2015-03-06
Release date:2015-04-01
Last modified:2023-02-01
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of a sensory box/GGDEF family protein (CC_0091) from Caulobacter crescentus CB15 at 1.40 A resolution (PSI Community Target, Shapiro)
To be published
6TTS
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BU of 6tts by Molmil
Crystal structure of the GGDEF domain of DgcB from Caulobacter crescentus in complex with c-di-GMP
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), GGDEF diguanylate cyclase DgcB, SULFATE ION
Authors:Holzschuh, F, Schirmer, T, Teixeira, R.
Deposit date:2019-12-30
Release date:2021-01-13
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of the GGDEF domain of DgcB from Caulobacter crescentus in complex with c-di-GMP
To Be Published
6TTR
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BU of 6ttr by Molmil
Crystal Structure of the coiled coil and GGDEF domain of DgcB from Caulobacter crescentus in complex with c-di-GMP
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), GGDEF diguanylate cyclase DgcB, PHOSPHATE ION
Authors:Holzschuh, F, Schirmer, T, Teixeira, R.D.
Deposit date:2019-12-30
Release date:2021-01-13
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Crystal structure of the coiled coil and GGDEF domain of DgcB from Caulobacter crescentus in complex with c-di-GMP
To Be Published
6EIB
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BU of 6eib by Molmil
Structure of the active GGEEF domain of a diguanylate cyclase from Vibrio cholerae.
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, SULFATE ION, ...
Authors:Chouhan, O.P, Roske, Y.
Deposit date:2017-09-19
Release date:2018-10-10
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.941 Å)
Cite:Structure of the active GGEEF domain of a diguanylate cyclase from Vibrio cholerae.
Biochem.Biophys.Res.Commun., 523, 2020
3QYY
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BU of 3qyy by Molmil
A Novel Interaction Mode between a Microbial GGDEF Domain and the Bis-(3, 5 )-cyclic di-GMP
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), DI(HYDROXYETHYL)ETHER, MAGNESIUM ION, ...
Authors:Yang, C.-Y, Chin, K.-H, Chou, S.-H.
Deposit date:2011-03-04
Release date:2011-11-30
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The structure and inhibition of a GGDEF diguanylate cyclase complexed with (c-di-GMP)(2) at the active site
Acta Crystallogr.,Sect.D, 67, 2011
4H54
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BU of 4h54 by Molmil
Crystal structure of the diguanylate cyclase DgcZ
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), Diguanylate cyclase YdeH, GUANOSINE-5'-RP-ALPHA-THIO-TRIPHOSPHATE, ...
Authors:Zaehringer, F, Schirmer, T.
Deposit date:2012-09-18
Release date:2013-07-03
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.9 Å)
Cite:Structure and signaling mechanism of a zinc-sensory diguanylate cyclase.
Structure, 21, 2013
7A7E
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BU of 7a7e by Molmil
Structure of a delta-N mutant - E232start - of PA1120 (TpbB or YfiN) from Pseudomonas aeruginosa (PAO1) comprising only the GGDEF domain
Descriptor: Diguanylate cyclase TpbB, MAGNESIUM ION
Authors:Giardina, G, Rinaldo, S, Mantoni, F, Brunotti, P.
Deposit date:2020-08-28
Release date:2021-07-07
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Studying GGDEF Domain in the Act: Minimize Conformational Frustration to Prevent Artefacts.
Life, 11, 2021
4URG
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BU of 4urg by Molmil
Crystal Structure of GGDEF domain from T.maritima (active-like dimer)
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), DIGUANYLATE CYCLASE
Authors:Deepthi, A, Liew, C.W, Liang, Z.X, Swaminathan, K, Lescar, J.
Deposit date:2014-06-30
Release date:2014-10-08
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of a Diguanylate Cyclase from Thermotoga Maritima: Insights Into Activation, Feedback Inhibition and Thermostability
Plos One, 9, 2014
4URQ
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BU of 4urq by Molmil
Crystal Structure of GGDEF domain (I site mutant) from T.maritima
Descriptor: DIGUANYLATE CYCLASE
Authors:Deepthi, A, Liew, C.W, Liang, Z.X, Swamianthan, K, Lescar, J.
Deposit date:2014-07-01
Release date:2014-10-08
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of a Diguanylate Cyclase from Thermotoga Maritima: Insights Into Activation, Feedback Inhibition and Thermostability
Plos One, 9, 2014
4WXO
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BU of 4wxo by Molmil
SadC (300-487) from Pseudomonas aeruginosa PAO1
Descriptor: Uncharacterized protein
Authors:Liu, C, Liu, S, Gu, L.
Deposit date:2014-11-14
Release date:2015-11-18
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.805 Å)
Cite:Crystal structure of SadC (300-487) from Pseudomonas aeruginosa PAO1
To Be Published
4WXW
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BU of 4wxw by Molmil
SadC (323-487) from Pseudomonas aeruginosa PAO1
Descriptor: MAGNESIUM ION, Uncharacterized protein
Authors:Liu, C, Liu, S, Gu, L.
Deposit date:2014-11-14
Release date:2015-11-18
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of SadC (323-487) from Pseudomonas aeruginosa PAO1
To Be Published
4ZMM
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BU of 4zmm by Molmil
GGDEF domain of Dcsbis complexed with c-di-GMP
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), diguanylate cyclase
Authors:Chen, Y, Liu, C, Liu, S, Chi, K, Gu, L.
Deposit date:2015-05-04
Release date:2016-05-04
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.503 Å)
Cite:Crystal structure of Dcsbis GGDEF domain complexed with c-di-GMP
To Be Published
4ZVF
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BU of 4zvf by Molmil
Crystal structure of GGDEF domain of the E. coli DosC - form II (GTP-alpha-S-bound)
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Diguanylate cyclase DosC, ...
Authors:Tarnawski, M, Barends, T.R.M, Schlichting, I.
Deposit date:2015-05-18
Release date:2015-11-11
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Structural analysis of an oxygen-regulated diguanylate cyclase.
Acta Crystallogr.,Sect.D, 71, 2015
4ZVH
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BU of 4zvh by Molmil
Crystal structure of GGDEF domain of the E. coli DosC - form IV
Descriptor: Diguanylate cyclase DosC, SULFATE ION
Authors:Tarnawski, M, Barends, T.R.M, Schlichting, I.
Deposit date:2015-05-18
Release date:2015-11-11
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.301 Å)
Cite:Structural analysis of an oxygen-regulated diguanylate cyclase.
Acta Crystallogr.,Sect.D, 71, 2015
4ZVE
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BU of 4zve by Molmil
Crystal structure of GGDEF domain of the E. coli DosC - form I (apo-form)
Descriptor: 1,2-ETHANEDIOL, CITRIC ACID, Diguanylate cyclase DosC
Authors:Tarnawski, M, Barends, T.R.M, Schlichting, I.
Deposit date:2015-05-18
Release date:2015-11-11
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structural analysis of an oxygen-regulated diguanylate cyclase.
Acta Crystallogr.,Sect.D, 71, 2015
4ZVG
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BU of 4zvg by Molmil
Crystal structure of GGDEF domain of the E. coli DosC - form III
Descriptor: Diguanylate cyclase DosC
Authors:Tarnawski, M, Barends, T.R.M, Schlichting, I.
Deposit date:2015-05-18
Release date:2015-11-11
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural analysis of an oxygen-regulated diguanylate cyclase.
Acta Crystallogr.,Sect.D, 71, 2015
3I5B
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BU of 3i5b by Molmil
Crystal structure of the isolated GGDEF domain of WpsR from Pseudomonas aeruginosa
Descriptor: L(+)-TARTARIC ACID, WspR response regulator
Authors:Navarro, M.V.A.S, De, N, Sondermann, H.
Deposit date:2009-07-03
Release date:2009-08-18
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.043 Å)
Cite:Determinants for the activation and autoinhibition of the diguanylate cyclase response regulator WspR.
J.Mol.Biol., 393, 2009

 

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