PDB: 113 resultsInfo pagesStatus searchChemie searchBIRD

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1W0H	Crystallographic structure of the nuclease domain of 3'hExo, a DEDDh family member, bound to rAMP Descriptor: 3'-5' EXONUCLEASE ERI1, ADENOSINE MONOPHOSPHATE, MAGNESIUM ION Authors: Cheng, Y, Patel, D. Deposit date: 2004-06-04 Release date: 2004-09-30 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (1.59 Å) Cite: Crystallographic Structure of the Nuclease Domain of 3'Hexo, a Deddh Family Member, Bound to Ramp J.Mol.Biol., 343, 2004
7YW5	Crystal Structure of the ITS1 processing by human ribonuclease ISG20L2 with mutation D327A Descriptor: Interferon-stimulated 20 kDa exonuclease-like 2 Authors: Yang, X.Y, Liu, X.H. Deposit date: 2022-08-21 Release date: 2024-01-17 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.77 Å) Cite: Molecular mechanism of human ISG20L2 for the ITS1 cleavage in the processing of 18S precursor ribosomal RNA. Nucleic Acids Res., 52, 2024
7T2S	Structure of E. coli upec-117 Cap18 3'-5' exonuclease Descriptor: 3'-5' exonuclease, ACETATE ION Authors: Liang, Q, Richey, S.T, Ye, Q, Lau, R.K, Corbett, K.D. Deposit date: 2021-12-06 Release date: 2022-07-20 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.82 Å) Cite: Structure and activity of a bacterial defense-associated 3'-5' exonuclease. Protein Sci., 31, 2022
5Z9X	Arabidopsis SMALL RNA DEGRADING NUCLEASE 1 in complex with an RNA substrate Descriptor: MAGNESIUM ION, RNA (5'-R(P*GP*CP*CP*CP*AP*UP*UP*AP*G)-3'), SULFATE ION, ... Authors: Chen, J, Liu, L, You, C, Gu, J, Ruan, W, Zhang, L, Gan, J, Cao, C, Huang, Y, Chen, X, Ma, J. Deposit date: 2018-02-05 Release date: 2018-06-27 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structural and biochemical insights into small RNA 3' end trimming by Arabidopsis SDN1. Nat Commun, 9, 2018
5CY4	Crystal structure of an oligoribonuclease from Acinetobacter baumannii Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Oligoribonuclease Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2015-07-30 Release date: 2015-08-19 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Crystal structure of an oligoribonuclease from Acinetobacter baumannii To Be Published
2F96	2.1 A crystal structure of Pseudomonas aeruginosa rnase T (Ribonuclease T) Descriptor: MAGNESIUM ION, Ribonuclease T Authors: Zheng, H, Chruszcz, M, Cymborowski, M, Wang, Y, Gorodichtchenskaia, E, Skarina, T, Guthrie, J, Savchenko, A, Edwards, A, Joachimiak, A, Minor, W, Midwest Center for Structural Genomics (MCSG) Deposit date: 2005-12-05 Release date: 2006-02-14 Last modified: 2022-04-13 Method: X-RAY DIFFRACTION (2.09 Å) Cite: Crystal Structure of RNase T, an Exoribonuclease Involved in tRNA Maturation and End Turnover. Structure, 15, 2007
3CG7	Crystal structure of cell-death related nuclease 4 (CRN-4) Descriptor: Cell death-related nuclease 4, ZINC ION Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2008-03-05 Release date: 2008-12-30 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Crystal structure of CRN-4: implications for domain function in apoptotic DNA degradation Mol.Cell.Biol., 29, 2009
7N8W	Crystal structure of ERI2 nuclease bound to rAMP Descriptor: 1,2-ETHANEDIOL, ADENOSINE MONOPHOSPHATE, ERI1 exoribonuclease 2, ... Authors: Thapar, R, Arvai, A.S, Tainer, J.A. Deposit date: 2021-06-15 Release date: 2022-07-06 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Crystal structure of ERI2 nuclease bound to rAMP To Be Published
7N8V	Crystal structure of free ERI2 nuclease Descriptor: ERI1 exoribonuclease 2, SULFATE ION Authors: Thapar, R, Arvai, A.S, Tainer, J.A. Deposit date: 2021-06-15 Release date: 2022-07-06 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Crystal structure of free ERI2 nuclease To Be Published
3CM6	Crystal structure of cell-death related nuclease 4 (CRN-4) bound with Er Descriptor: Cell death-related nuclease 4, ERBIUM (III) ION, ZINC ION Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2008-03-21 Release date: 2008-12-30 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Crystal structure of CRN-4: implications for domain function in apoptotic DNA degradation Mol.Cell.Biol., 29, 2009
3CM5	Crystal structure of Cell-Death Related Nuclease 4 (CRN-4) bound with Mn Descriptor: Cell death-related nuclease 4, MANGANESE (II) ION, ZINC ION Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2008-03-21 Release date: 2008-12-30 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.81 Å) Cite: Crystal structure of CRN-4: implications for domain function in apoptotic DNA degradation Mol.Cell.Biol., 29, 2009
7LPY	Crystal structures and ribonuclease activity of the Flavivirus host factor ERI3 that is involved in viral RNA synthesis define the ERI subfamily of structure-specific 3-prime - 5-prime exoribonucleases Descriptor: ADENOSINE MONOPHOSPHATE, ERI1 exoribonuclease 3, GLYCEROL, ... Authors: Thapar, R, Andrew, A.S, Tainer, J.A. Deposit date: 2021-02-12 Release date: 2022-02-16 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Crystal structures and ribonuclease activity of the Flavivirus host factor ERI3 that is involved in viral RNA synthesis define the ERI subfamily of structure-specific 3' - 5' exoribonucleases To Be Published
7LPZ	Crystal structures and ribonuclease activity of the Flavivirus host factor ERI3 that is involved in viral RNA synthesis define the ERI subfamily of structure-specific 3-prime - 5-prime exoribonucleases Descriptor: ADENOSINE MONOPHOSPHATE, ERI1 exoribonuclease 3, GLYCEROL, ... Authors: Thapar, R, Andrew, A.S, Tainer, J.A. Deposit date: 2021-02-12 Release date: 2022-02-16 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Crystal structures and ribonuclease activity of the Flavivirus host factor ERI3 that is involved in viral RNA synthesis define the ERI subfamily of structure-specific 3' - 5' exoribonucleases To Be Published
7LQ0	Crystal structures and ribonuclease activity of the Flavivirus host factor ERI3 that is involved in viral RNA synthesis define the ERI subfamily of structure-specific 3-prime - 5-prime exoribonucleases Descriptor: ADENOSINE MONOPHOSPHATE, ERI1 exoribonuclease 3, GLYCEROL, ... Authors: Thapar, R, Andrew, A.S, Tainer, J.A. Deposit date: 2021-02-12 Release date: 2022-02-16 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Crystal structures and ribonuclease activity of the Flavivirus host factor ERI3 that is involved in viral RNA synthesis define the ERI subfamily of structure-specific 3' - 5' exoribonucleases To Be Published
1J53	Structure of the N-terminal Exonuclease Domain of the Epsilon Subunit of E.coli DNA Polymerase III at pH 8.5 Descriptor: 1,2-ETHANEDIOL, DNA polymerase III, epsilon chain, ... Authors: Hamdan, S, Carr, P.D, Brown, S.E, Ollis, D.L, Dixon, N.E. Deposit date: 2002-01-22 Release date: 2002-10-16 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural Basis for Proofreading during Replication of the Escherichia coli Chromosome Structure, 10, 2002
7K06	Crystal structures and ribonuclease activity of the Flavivirus host factor ERI3 that is involved in viral RNA synthesis define the ERI subfamily of structure-specific 3-prime - 5-prime exoribonucleases Descriptor: CYTIDINE-5'-MONOPHOSPHATE, ERI1 exoribonuclease 3, MAGNESIUM ION Authors: Thapar, R, Arvai, A.S, Tainer, J.A. Deposit date: 2020-09-03 Release date: 2021-10-06 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Crystal structures and ribonuclease activity of the Flavivirus host factor ERI3 that is involved in viral RNA synthesis define the ERI subfamily of structure-specific 3'- 5' exoribonucleases To Be Published
7K07	Crystal structures and ribonuclease activity of the Flavivirus host factor ERI3 that is involved in viral RNA synthesis define the ERI subfamily of structure-specific 3-prime - 5-prime exoribonucleases Descriptor: ADENOSINE MONOPHOSPHATE, ERI1 exoribonuclease 3, MANGANESE (II) ION Authors: Thapar, R, Arvai, A.S, Tainer, J.A. Deposit date: 2020-09-03 Release date: 2021-10-06 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Crystal structures and ribonuclease activity of the Flavivirus host factor ERI3 that is involved in viral RNA synthesis define the ERI subfamily of structure-specific 3'- 5' exoribonucleases To Be Published
7K05	Crystal structures and ribonuclease activity of the Flavivirus host factor ERI3 that is involved in viral RNA synthesis define the ERI subfamily of structure-specific 3-prime - 5-prime exoribonucleases Descriptor: ADENOSINE MONOPHOSPHATE, ERI1 exoribonuclease 3, GLYCEROL, ... Authors: Thapar, R, Andrew, A.S, Tainer, J.A. Deposit date: 2020-09-03 Release date: 2021-10-06 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Crystal structures and ribonuclease activity of the Flavivirus host factor ERI3 that is involved in viral RNA synthesis define the ERI subfamily of structure-specific 3' - 5' exoribonucleases To Be Published
1J9A	OLIGORIBONUCLEASE Descriptor: OLIGORIBONUCLEASE, SULFATE ION Authors: Bonander, N, Tordova, M, Ladner, J.E, Eisenstein, E, Gilliland, G.L, Structure 2 Function Project (S2F) Deposit date: 2001-05-24 Release date: 2003-06-24 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.5 Å) Cite: The Crystal Structure of Haemophilus Influenzae HI1715, an Oligoribonuclease To be Published
2XRI	Crystal structure of human ERI1 exoribonuclease 3 Descriptor: ERI1 EXORIBONUCLEASE 3, GLYCEROL, MAGNESIUM ION Authors: Welin, M, Siponen, M.I, Arrowsmith, C.H, Berglund, H, Bountra, C, Collins, R, Edwards, A.M, Flodin, S, Flores, A, Graslund, S, Hammarstrom, M, Johansson, I, Karlberg, T, Kol, S, Kotenyova, T, Kouznetsova, E, Moche, M, Nyman, T, Persson, C, Schuler, H, Schutz, P, Thorsell, A.G, Tresaugues, L, Van Der Berg, S, Wahlberg, E, Weigelt, J, Nordlund, P. Deposit date: 2010-09-15 Release date: 2010-09-29 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Crystal Structure of Human Eri1 Exoribonuclease 3 To be Published
6J7Y	Human mitochondrial Oligoribonuclease in complex with DNA Descriptor: DNA (5'-D(P*TP*T)-3'), MAGNESIUM ION, Oligoribonuclease, ... Authors: Chu, L.Y, Agrawal, S, Yuan, H.S. Deposit date: 2019-01-18 Release date: 2019-08-28 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.203 Å) Cite: Structural insights into nanoRNA degradation by human Rexo2. Rna, 25, 2019
6J80	Human mitochondrial Oligoribonuclease in complex with poly-dT DNA Descriptor: CITRIC ACID, DNA (5'-D(P*TP*TP*TP*TP*TP*TP*T)-3'), MAGNESIUM ION, ... Authors: Chu, L.Y, Agrawal, S, Yuan, H.S. Deposit date: 2019-01-18 Release date: 2019-08-28 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.812 Å) Cite: Structural insights into nanoRNA degradation by human Rexo2. Rna, 25, 2019
6J7Z	Human mitochondrial Oligoribonuclease in complex with RNA Descriptor: CITRIC ACID, MAGNESIUM ION, Oligoribonuclease, ... Authors: Chu, L.Y, Agrawal, S, Yuan, H.S. Deposit date: 2019-01-18 Release date: 2019-08-28 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.005 Å) Cite: Structural insights into nanoRNA degradation by human Rexo2. Rna, 25, 2019
1J54	Structure of the N-terminal exonuclease domain of the epsilon subunit of E.coli DNA polymerase III at pH 5.8 Descriptor: 1,2-ETHANEDIOL, DNA polymerase III, epsilon chain, ... Authors: Hamdan, S, Carr, P.D, Brown, S.E, Ollis, D.L, Dixon, N.E. Deposit date: 2002-01-22 Release date: 2002-10-16 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Structural Basis for Proofreading during Replication of the Escherichia coli Chromosome Structure, 10, 2002
5DK5	Crystal structure of CRN-4-MES complex Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Cell death-related nuclease 4, ISOPROPYL ALCOHOL, ... Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2015-09-03 Release date: 2016-08-24 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Identification of Inhibitors for the DEDDh Family of Exonucleases and a Unique Inhibition Mechanism by Crystal Structure Analysis of CRN-4 Bound with 2-Morpholin-4-ylethanesulfonate (MES) J.Med.Chem., 59, 2016

 

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