Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6H7R
DownloadVisualize
BU of 6h7r by Molmil
Sulfolobus solfataricus 2-keto-3-deoxygluconate aldolase T157V/A198L variant
Descriptor: 1,2-ETHANEDIOL, 2-dehydro-3-deoxy-phosphogluconate/2-dehydro-3-deoxy-6-phosphogalactonate aldolase, GLYCEROL
Authors:Crennell, S.J, Danson, M.J, Royer, S.
Deposit date:2018-07-31
Release date:2019-08-14
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Sulfolobus solfataricus 2-keto-3-deoxygluconate aldolase T157V/A198L variant
To Be Published
4OE7
DownloadVisualize
BU of 4oe7 by Molmil
Crystal structure of YagE, a KDG aldolase protein, in complex with aldol condensed product of pyruvate and glyoxal
Descriptor: (4R)-4-hydroxy-2,5-dioxopentanoic acid, (4S)-4-hydroxy-2,5-dioxopentanoic acid, 1,2-ETHANEDIOL, ...
Authors:Manoj Kumar, P, Baskar, V, Manicka, S, Krishnaswamy, S.
Deposit date:2014-01-12
Release date:2014-12-24
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Crystal structure of YagE, a KDG aldolase protein, in complex with aldol condensed product of pyruvate and glyoxal
To be Published
4ONV
DownloadVisualize
BU of 4onv by Molmil
Crystal structure of YagE, a KDG aldolase protein in complex with 2-Keto-3-deoxy gluconate
Descriptor: 1,2-ETHANEDIOL, 2-KETO-3-DEOXYGLUCONATE, GLYCEROL, ...
Authors:Manoj Kumar, P, Bhaskar, V, Manicka, S, Krishnaswamy, S.
Deposit date:2014-01-29
Release date:2015-01-14
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:Crystal structure of YagE, a KDG aldolase protein in complex with 2-Keto-3-deoxy gluconate
To be Published
4PFM
DownloadVisualize
BU of 4pfm by Molmil
SHEWANELLA BENTHICA DHDPS WITH LYSINE AND PYRUVATE
Descriptor: 4-hydroxy-tetrahydrodipicolinate synthase, CITRATE ANION, GLYCEROL, ...
Authors:Wubben, J.M, Paxman, J.J, Dogovski, C, Panjikar, S, Perugini, M.A.
Deposit date:2014-04-30
Release date:2015-05-06
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.327 Å)
Cite:Defining a Molecular Determinant of Lysine-Mediated Allosteric Inhibition of DHDPS.
To Be Published
4PTN
DownloadVisualize
BU of 4ptn by Molmil
Crystal Structure of YagE, a KDG aldolase protein in complex with Magnesium cation coordinated L-glyceraldehyde
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, L-glyceraldehyde, ...
Authors:Manoj Kumar, P, Baskar, V, Manicka, S, Krishnaswamy, S.
Deposit date:2014-03-11
Release date:2014-12-03
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Crystal structure of YagE, a putative DHDPS-like protein from Escherichia coli K12.
Proteins, 71, 2008
1HL2
DownloadVisualize
BU of 1hl2 by Molmil
Crystal structure of N-acetylneuraminate lyase from E. coli mutant L142R in complex with b-hydroxypyruvate
Descriptor: 3-HYDROXYPYRUVIC ACID, N-ACETYLNEURAMINATE LYASE SUBUNIT
Authors:Joerger, A.C, Fersht, A.R.
Deposit date:2003-03-12
Release date:2003-05-09
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Mimicking Natural Evolution in Vitro: An N-Acetylneuraminate Lyase Mutant with an Increased Dihydrodipicolinate Synthase Activity
Proc.Natl.Acad.Sci.USA, 100, 2003
4R53
DownloadVisualize
BU of 4r53 by Molmil
dihydrodipicolinate synthase from C. jejuni with vacant active site and vacant allosteric site
Descriptor: 1,2-ETHANEDIOL, 4-hydroxy-tetrahydrodipicolinate synthase, CHLORIDE ION, ...
Authors:Conly, C.J.T.
Deposit date:2014-08-20
Release date:2015-10-07
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:Tyrosine 110 plays a critical role in regulating the allosteric inhibition of Campylobacter jejuni dihydrodipicolinate synthase by lysine.
Biochemistry, 53, 2014
7JZA
DownloadVisualize
BU of 7jza by Molmil
Dihydrodipicolinate synthase S48F mutant with lysine in the allosteric site, and pyruvate and succinic semi-aldehyde in the catalytic site
Descriptor: 4-hydroxy-tetrahydrodipicolinate synthase, GLYCEROL, LYSINE, ...
Authors:Board, A.J, Dobson, R.C.J.
Deposit date:2020-09-01
Release date:2021-09-22
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Mapping the uncharted water channel of DHDPS
To Be Published
7JZD
DownloadVisualize
BU of 7jzd by Molmil
Dihydrodipicolinate synthase mutation S48W with Lysine in the allosteric site
Descriptor: 4-hydroxy-tetrahydrodipicolinate synthase, GLYCEROL, POTASSIUM ION
Authors:Board, A.J, Dobson, R.C.J.
Deposit date:2020-09-02
Release date:2021-09-22
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Mapping the uncharted water channel of DHDPS
To Be Published
7JZE
DownloadVisualize
BU of 7jze by Molmil
Dihydrodipicolinate synthase mutant S48W
Descriptor: 4-hydroxy-tetrahydrodipicolinate synthase, GLYCEROL, POTASSIUM ION
Authors:Board, A.J, Dobson, R.C.J.
Deposit date:2020-09-02
Release date:2021-09-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Mapping the uncharted water channel of DHDPS
To Be Published
7JZC
DownloadVisualize
BU of 7jzc by Molmil
Dihydrodipicolinate synthase S48W mutant with lysine in the allosteric site, and pyruvate in the catalytic site
Descriptor: 4-hydroxy-tetrahydrodipicolinate synthase, POTASSIUM ION
Authors:Board, A.J, Dobson, R.C.J.
Deposit date:2020-09-02
Release date:2021-09-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Mapping the uncharted water channel of DHDPS
To Be Published
7JZF
DownloadVisualize
BU of 7jzf by Molmil
Dihydrodipicolinate synthase mutant S48F with pyruvate in the catalytic site
Descriptor: 4-hydroxy-tetrahydrodipicolinate synthase, GLYCEROL, POTASSIUM ION
Authors:Board, A.J, Dobson, R.C.J.
Deposit date:2020-09-02
Release date:2021-09-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Mapping the uncharted water channel of DHDPS
To Be Published
7JZB
DownloadVisualize
BU of 7jzb by Molmil
Dihydrodipicolinate synthase S48W with lysine in the allosteric site, and pyruvate and succinic semi-aldehyde
Descriptor: 4-hydroxy-tetrahydrodipicolinate synthase, LYSINE, POTASSIUM ION
Authors:Board, A.J, Dobson, R.C.J.
Deposit date:2020-09-01
Release date:2021-09-22
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Mapping the uncharted water channel of DHDPS
To Be Published
7JZG
DownloadVisualize
BU of 7jzg by Molmil
Dihydrodipicolinate synthase mutant S48F with lysine in the allosteric site and pyruvate in the catalytic site
Descriptor: 4-hydroxy-tetrahydrodipicolinate synthase, GLYCEROL, LYSINE, ...
Authors:Board, A.J, Dobson, R.C.J.
Deposit date:2020-09-02
Release date:2021-09-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Mapping the uncharted water channel of DHDPS
To Be Published
7JZ9
DownloadVisualize
BU of 7jz9 by Molmil
Dihydrodipicolinate synthase S48F with pyruvate and succinic semi-aldehyde
Descriptor: 4-hydroxy-tetrahydrodipicolinate synthase, GLYCEROL, POTASSIUM ION
Authors:Board, A.J, Dobson, R.C.J.
Deposit date:2020-09-01
Release date:2021-09-22
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Mapping the uncharted water channel of DHDPS
To Be Published
7JZ7
DownloadVisualize
BU of 7jz7 by Molmil
Dihydrodipicolinate synthase mutant S48F
Descriptor: 4-hydroxy-tetrahydrodipicolinate synthase, GLYCEROL, POTASSIUM ION
Authors:Board, A.J, Dobson, R.C.J.
Deposit date:2020-09-01
Release date:2021-10-06
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Mapping the unchartered waters of dihydrodipicolinate synthase: a novel mechanism of allosteric inhibition.
To Be Published
2WNZ
DownloadVisualize
BU of 2wnz by Molmil
Structure of the E192N mutant of E. coli N-acetylneuraminic acid lyase in complex with pyruvate in space group P21 crystal form I
Descriptor: (2S)-2-HYDROXYPROPANOIC ACID, 2-ETHOXYETHANOL, LACTIC ACID, ...
Authors:Campeotto, I, Bolt, A.H, Harman, T.A, Trinh, C.H, Dennis, C.A, Phillips, S.E.V, Pearson, A.R, Nelson, A, Berry, A.
Deposit date:2009-07-21
Release date:2010-08-25
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural Insights Into Substrate Specificity in Variants of N-Acetylneuraminic Acid Lyase Produced by Directed Evolution.
J.Mol.Biol., 404, 2010
2WKJ
DownloadVisualize
BU of 2wkj by Molmil
Crystal structure of the E192N mutant of E. Coli N-acetylneuraminic acid lyase in complex with pyruvate at 1.45A resolution in space group P212121
Descriptor: N-ACETYLNEURAMINATE LYASE, PENTAETHYLENE GLYCOL, PYRUVIC ACID
Authors:Campeotto, I, Carr, S.B, Trinh, C.H, Nelson, A.S, Berry, A, Phillips, S.E.V, Pearson, A.R.
Deposit date:2009-06-11
Release date:2009-12-01
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structure of an Escherichia coli N-acetyl-D-neuraminic acid lyase mutant, E192N, in complex with pyruvate at 1.45 angstrom resolution.
Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun., 65, 2009
2WNN
DownloadVisualize
BU of 2wnn by Molmil
Structure of wild type E. coli N-acetylneuraminic acid lyase in complex with pyruvate in space group P21
Descriptor: N-ACETYLNEURAMINATE LYASE, PENTAETHYLENE GLYCOL, SODIUM ION
Authors:Campeotto, I, Bolt, A.H, Harman, T.A, Trinh, C.H, Dennis, C.A, Phillips, S.E.V, Pearson, A.R, Nelson, A, Berry, A.
Deposit date:2009-07-13
Release date:2010-08-25
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural Insights Into Substrate Specificity in Variants of N-Acetylneuraminic Acid Lyase Produced by Directed Evolution.
J.Mol.Biol., 404, 2010
2WPB
DownloadVisualize
BU of 2wpb by Molmil
Crystal structure of the E192N mutant of E. Coli N-acetylneuraminic acid lyase in complex with pyruvate and the inhibitor (2R,3R)-2,3,4- trihydroxy-N,N-dipropylbutanamide in space group P21 crystal form I
Descriptor: (2R,3R)-2,3,4-TRIHYDROXY-N,N-DIPROPYLBUTANAMIDE, N-ACETYLNEURAMINATE LYASE
Authors:Campeotto, I, Bolt, A.H, Harman, T.A, Trinh, C.H, Dennis, C.A, Phillips, S.E.V, Pearson, A.R, Nelson, A, Berry, A.
Deposit date:2009-08-03
Release date:2010-08-25
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural Insights Into Substrate Specificity in Variants of N-Acetylneuraminic Acid Lyase Produced by Directed Evolution.
J.Mol.Biol., 404, 2010
2XFW
DownloadVisualize
BU of 2xfw by Molmil
Structure of the E192N mutant of E. coli N-acetylneuraminic acid lyase in complex with pyruvate in crystal form III
Descriptor: N-ACETYLNEURAMINIC ACID LYASE, PENTAETHYLENE GLYCOL, PYRUVIC ACID
Authors:Campeotto, I, Murshudov, G.N, Bolt, A.H, Trinh, C.H, Phillips, S.E.V, Nelson, A, Pearson, A.R, Berry, A.
Deposit date:2010-05-28
Release date:2010-09-22
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural Insights Into Substrate Specificity in Variants of N-Acetylneuraminic Acid Lyase Produced by Directed Evolution.
To be Published
2YXG
DownloadVisualize
BU of 2yxg by Molmil
Crystal structure of Dihyrodipicolinate Synthase (dapA)
Descriptor: Dihydrodipicolinate synthase
Authors:Padmanabhan, B, Bessho, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-26
Release date:2007-10-30
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of dihydrodipicolinate synthase from Methanocaldococcus jannaschii.
Acta Crystallogr.,Sect.F, 65, 2009
2YDA
DownloadVisualize
BU of 2yda by Molmil
Sulfolobus sulfataricus 2-keto-3-deoxygluconate aldolase Y103F,Y130F, A198F variant
Descriptor: 2-KETO-3-DEOXY GLUCONATE ALDOLASE, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, GLYCEROL, ...
Authors:Crennell, S.J, Royer, S.F, Angelopoulou, M, Hough, D.W, Danson, M.J, Bull, S.D.
Deposit date:2011-03-18
Release date:2012-03-28
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Sulfolobus Sulfataricus 2-Keto-3-Deoxygluconate Aldolase
To be Published
2YGY
DownloadVisualize
BU of 2ygy by Molmil
Structure of wild type E. coli N-acetylneuraminic acid lyase in space group P21 crystal form II
Descriptor: CHLORIDE ION, N-ACETYLNEURAMINATE LYASE, PENTAETHYLENE GLYCOL
Authors:Campeotto, I, Nelson, A, Berry, A, Phillips, S.E.V, Pearson, A.R.
Deposit date:2011-04-23
Release date:2012-04-04
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Pathological macromolecular crystallographic data affected by twinning, partial-disorder and exhibiting multiple lattices for testing of data processing and refinement tools.
Sci Rep, 8, 2018
3B4U
DownloadVisualize
BU of 3b4u by Molmil
Crystal structure of dihydrodipicolinate synthase from Agrobacterium tumefaciens str. C58
Descriptor: Dihydrodipicolinate synthase, MAGNESIUM ION
Authors:Zhang, R, Xu, L, Gu, J, Savchenko, A, Edwards, A.M, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2007-10-24
Release date:2007-12-04
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:The crystal structure of the dihydrodipicolinate synthase from Agrobacterium tumefaciens.
To be Published

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon