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6K6R
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BU of 6k6r by Molmil
Crystal structure of Saccharomyces cerevisiae single domain sulfurtranferase RDL2
Descriptor: Thiosulfate sulfurtransferase RDL2, mitochondrial
Authors:Li, H.J, Wang, Q.D.
Deposit date:2019-06-04
Release date:2019-11-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.471 Å)
Cite:Saccharomyces cerevisiaeRhodanese RDL2 Uses the ArgResidue of the Active-Site Loop for Thiosulfate Decomposition
Antioxidants, 10, 2021
6JL7
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BU of 6jl7 by Molmil
crystal structure of TBC1D23 N terminal domain
Descriptor: TBC1 domain family member 23
Authors:Sun, Q, Hu, W, Jia, D.
Deposit date:2019-03-04
Release date:2020-03-04
Last modified:2021-09-15
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of TBC1D23 N-terminus reveals a novel role for rhodanese domain.
Plos Biol., 18, 2020
6MXV
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BU of 6mxv by Molmil
The crystal structure of a rhodanese-like family protein from Francisella tularensis subsp. tularensis SCHU S4
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, DODECAETHYLENE GLYCOL, ...
Authors:Tan, K, Skarina, T, Di Leo, R, Savchenko, A, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2018-10-31
Release date:2018-11-21
Last modified:2019-12-18
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:The crystal structure of a rhodanese-like family protein from Francisella tularensis subsp. tularensis SCHU S4
To Be Published
6HIV
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BU of 6hiv by Molmil
Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains the complete mitoribosome
Descriptor: 12S rRNA, 50S ribosomal protein L13, putative, ...
Authors:Ramrath, D.J.F, Niemann, M, Leibundgut, M, Bieri, P, Prange, C, Horn, E.K, Leitner, A, Boerhringer, D, Schneider, A, Ban, N.
Deposit date:2018-08-31
Release date:2018-10-03
Last modified:2018-11-07
Method:ELECTRON MICROSCOPY (7.8 Å)
Cite:Evolutionary shift toward protein-based architecture in trypanosomal mitochondrial ribosomes.
Science, 362, 2018
6HIZ
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BU of 6hiz by Molmil
Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains the head of the small mitoribosomal subunit
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, RNA (143-MER), ...
Authors:Ramrath, D.J.F, Niemann, M, Leibundgut, M, Bieri, P, Prange, C, Horn, E.K, Leitner, A, Boehringer, A, Schneider, A, Ban, N.
Deposit date:2018-08-31
Release date:2018-09-26
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.08 Å)
Cite:Evolutionary shift toward protein-based architecture in trypanosomal mitochondrial ribosomes.
Science, 362, 2018
6HIW
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BU of 6hiw by Molmil
Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains the complete small mitoribosomal subunit in complex with mt-IF-3
Descriptor: 9S rRNA, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Ramrath, D, Niemann, M, Leibundgut, M, Bieri, P, Prange, C, Horn, E.K, Leitner, A, Boehringer, D, Schneider, A, Ban, N.
Deposit date:2018-08-31
Release date:2018-09-26
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (3.37 Å)
Cite:Evolutionary shift toward protein-based architecture in trypanosomal mitochondrial ribosomes.
Science, 362, 2018
6H99
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BU of 6h99 by Molmil
Crystal structure of anaerobic ergothioneine biosynthesis enzyme from Chlorobium limicola in persulfide form.
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Leisinger, F, Burn, R, Meury, M, Lukat, P, Seebeck, F.P.
Deposit date:2018-08-03
Release date:2019-06-12
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural and Mechanistic Basis for Anaerobic Ergothioneine Biosynthesis.
J.Am.Chem.Soc., 141, 2019
6H98
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BU of 6h98 by Molmil
Native crystal structure of anaerobic ergothioneine biosynthesis enzyme from Chlorobium limicola.
Descriptor: CHLORIDE ION, ETHANOL, FORMIC ACID, ...
Authors:Leisinger, F, Burn, R, Meury, M, Lukat, P, Seebeck, F.P.
Deposit date:2018-08-03
Release date:2019-06-12
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural and Mechanistic Basis for Anaerobic Ergothioneine Biosynthesis.
J.Am.Chem.Soc., 141, 2019
6H9A
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BU of 6h9a by Molmil
Crystal structure of anaerobic ergothioneine biosynthesis enzyme from Chlorobium limicola in complex with natural substrate trimethyl histidine.
Descriptor: CHLORIDE ION, N,N,N-trimethyl-histidine, SODIUM ION, ...
Authors:Leisinger, F, Burn, R, Meury, M, Lukat, P, Seebeck, F.P.
Deposit date:2018-08-03
Release date:2019-06-12
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.831 Å)
Cite:Structural and Mechanistic Basis for Anaerobic Ergothioneine Biosynthesis.
J.Am.Chem.Soc., 141, 2019
6BEV
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BU of 6bev by Molmil
Human Single Domain Sulfurtranferase TSTD1
Descriptor: Thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 1
Authors:Motl, N, Akey, D.L, Smith, J.L, Banerjee, R.
Deposit date:2017-10-25
Release date:2018-01-24
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.043 Å)
Cite:Thiosulfate sulfurtransferase-like domain-containing 1 protein interacts with thioredoxin.
J. Biol. Chem., 293, 2018
5VE4
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BU of 5ve4 by Molmil
Crystal structure of persulfide dioxygenase-rhodanese fusion protein with rhodanese domain inactivating mutation (C314S) from Burkholderia phytofirmans
Descriptor: BpPRF, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Motl, N, Skiba, M.A, Smith, J.L, Banerjee, R.
Deposit date:2017-04-03
Release date:2017-07-19
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structural and biochemical analyses indicate that a bacterial persulfide dioxygenase-rhodanese fusion protein functions in sulfur assimilation.
J. Biol. Chem., 292, 2017
5VE5
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BU of 5ve5 by Molmil
Crystal structure of persulfide dioxygenase rhodanese fusion protein with rhodanese domain inactivating mutation (C314S) from Burkholderia phytofirmans in complex with glutathione
Descriptor: BpPRF, CHLORIDE ION, FE (III) ION, ...
Authors:Motl, N, Skiba, M.A, Smith, J.L, Banerjee, R.
Deposit date:2017-04-03
Release date:2017-07-19
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural and biochemical analyses indicate that a bacterial persulfide dioxygenase-rhodanese fusion protein functions in sulfur assimilation.
J. Biol. Chem., 292, 2017
5VE3
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BU of 5ve3 by Molmil
Crystal structure of wild-type persulfide dioxygenase-rhodanese fusion protein from Burkholderia phytofirmans
Descriptor: BpPRF, FE (III) ION
Authors:Motl, N, Skiba, M.A, Smith, J.L, Banerjee, R.
Deposit date:2017-04-03
Release date:2017-07-19
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.793 Å)
Cite:Structural and biochemical analyses indicate that a bacterial persulfide dioxygenase-rhodanese fusion protein functions in sulfur assimilation.
J. Biol. Chem., 292, 2017
5WQK
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BU of 5wqk by Molmil
Crystal structure of 3-Mercaptopyruvate Sulfurtransferase(3MST) in complex with compound1
Descriptor: 4-methyl-2-(2-naphthalen-1-yl-2-oxidanylidene-ethyl)sulfanyl-1~{H}-pyrimidin-6-one, SODIUM ION, Sulfurtransferase
Authors:Suwanai, Y, Toma-Fukai, S, Shimizu, T.
Deposit date:2016-11-27
Release date:2017-09-06
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Discovery and Mechanistic Characterization of Selective Inhibitors of H2S-producing Enzyme: 3-Mercaptopyruvate Sulfurtransferase (3MST) Targeting Active-site Cysteine Persulfide
Sci Rep, 7, 2017
5WQJ
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BU of 5wqj by Molmil
Crystal structure of 3-Mercaptopyruvate Sulfurtransferase(3MST) in complex with compound1
Descriptor: 2-[2-[(4-oxidanylidene-3~{H}-quinazolin-2-yl)sulfanyl]ethanoylamino]thiophene-3-carboxamide, SODIUM ION, Sulfurtransferase
Authors:Suwanai, Y, Toma-Fukai, S, Shimizu, T.
Deposit date:2016-11-27
Release date:2017-09-06
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Discovery and Mechanistic Characterization of Selective Inhibitors of H2S-producing Enzyme: 3-Mercaptopyruvate Sulfurtransferase (3MST) Targeting Active-site Cysteine Persulfide
Sci Rep, 7, 2017
5LAM
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BU of 5lam by Molmil
Refined 3D NMR structure of the cytoplasmic rhodanese domain of the inner membrane protein YgaP from Escherichia coli
Descriptor: Inner membrane protein YgaP
Authors:Eichmann, C, Tzitzilonis, C, Nakamura, T, Maslennikov, I, Kwiatkowski, W, Choe, S, Lipton, S.A, Guntert, P, Riek, R.
Deposit date:2016-06-14
Release date:2016-08-17
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:S-Nitrosylation Induces Structural and Dynamical Changes in a Rhodanese Family Protein.
J.Mol.Biol., 428, 2016
5LAO
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BU of 5lao by Molmil
S-nitrosylated 3D NMR structure of the cytoplasmic rhodanese domain of the inner membrane protein YgaP from Escherichia coli
Descriptor: Inner membrane protein YgaP
Authors:Eichmann, C, Tzitzilonis, C, Nakamura, T, Maslennikov, I, Kwiatkowski, W, Choe, S, Lipton, S.A, Guntert, P, Riek, R.
Deposit date:2016-06-14
Release date:2016-08-17
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:S-Nitrosylation Induces Structural and Dynamical Changes in a Rhodanese Family Protein.
J.Mol.Biol., 428, 2016
5HPA
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BU of 5hpa by Molmil
The crystal of rhodanese domain of YgaP treated with sodium thiosulfate
Descriptor: Inner membrane protein YgaP
Authors:Eichmann, C, Tzitzilonis, C, Kwiatkowski, W, Riek, R.
Deposit date:2016-01-20
Release date:2017-02-01
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:S-Sulfhydration of the Catalytic Cysteine in the Rhodanese Domain of YgaP is a Complex Dynamical Process.
To Be Published
5HBQ
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BU of 5hbq by Molmil
C63D mutant of the rhodanese domain of YgaP
Descriptor: CHLORIDE ION, Inner membrane protein YgaP, SODIUM ION
Authors:Eichmann, C, Tzitzilonis, C, Nakamura, T, Kwiatkowski, W, Maslennikov, I, Choe, S, Lipton, S.A, Riek, R.
Deposit date:2016-01-02
Release date:2016-08-10
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:S-Nitrosylation Induces Structural and Dynamical Changes in a Rhodanese Family Protein.
J.Mol.Biol., 428, 2016
5HBP
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BU of 5hbp by Molmil
The crystal of rhodanese domain of YgaP treated with SNOC
Descriptor: Inner membrane protein YgaP
Authors:Eichmann, C, Tzitzilonis, C, Nakamura, T, Kwiatkowski, W, Maslennikov, I, Choe, S, Lipton, S.A, Riek, R.
Deposit date:2016-01-01
Release date:2016-08-10
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:S-Nitrosylation Induces Structural and Dynamical Changes in a Rhodanese Family Protein.
J.Mol.Biol., 428, 2016
5HBO
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BU of 5hbo by Molmil
Native rhodanese domain of YgaP prepared without DDT is both S-nitrosylated and S-sulfhydrated
Descriptor: Inner membrane protein YgaP
Authors:Eichmann, C, Tzitzilonis, C, Nakamura, T, Kwiatkowski, W, Maslennikov, I, Choe, S, Lipton, S.A, Riek, R.
Deposit date:2016-01-01
Release date:2016-08-10
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:S-Nitrosylation Induces Structural and Dynamical Changes in a Rhodanese Family Protein.
J.Mol.Biol., 428, 2016
5HBL
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BU of 5hbl by Molmil
Native rhodanese domain of YgaP prepared with 1mM DDT is S-nitrosylated
Descriptor: Inner membrane protein YgaP
Authors:Eichmann, C, Tzitzilonis, C, Nakamura, T, Kwiatkowski, W, Maslennikov, I, Choe, S, Lipton, S.A, Riek, R.
Deposit date:2015-12-31
Release date:2016-08-10
Last modified:2021-09-08
Method:X-RAY DIFFRACTION (1.617 Å)
Cite:S-Nitrosylation Induces Structural and Dynamical Changes in a Rhodanese Family Protein.
J.Mol.Biol., 428, 2016
4WH9
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BU of 4wh9 by Molmil
Structure of the CDC25B Phosphatase Catalytic Domain with Bound Inhibitor
Descriptor: 2-[(2-cyano-3-fluoro-5-hydroxyphenyl)sulfanyl]ethanesulfonic acid, GLYCEROL, M-phase inducer phosphatase 2, ...
Authors:Lund, G.L, Dudkin, S, Borkin, D, Ni, W, Grembecka, J, Cierpicki, T.
Deposit date:2014-09-20
Release date:2014-12-10
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Inhibition of CDC25B Phosphatase Through Disruption of Protein-Protein Interaction.
Acs Chem.Biol., 10, 2015
4WH7
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BU of 4wh7 by Molmil
Structure of the CDC25B Phosphatase Catalytic Domain with Bound Ligand
Descriptor: 2-fluoro-4-hydroxybenzonitrile, GLYCEROL, M-phase inducer phosphatase 2, ...
Authors:Lund, G.L, Dudkin, S, Borkin, D, Ni, W, Grembecka, J, Cierpicki, T.
Deposit date:2014-09-20
Release date:2014-12-10
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Inhibition of CDC25B Phosphatase Through Disruption of Protein-Protein Interaction.
Acs Chem.Biol., 10, 2015
2MOL
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BU of 2mol by Molmil
3D NMR structure of the cytoplasmic rhodanese domain of the full-length inner membrane protein YgaP from Escherichia coli
Descriptor: Inner membrane protein YgaP
Authors:Eichmann, C, Tzitzilonis, C, Bordignon, E, Maslennikov, I, Choe, S, Riek, R.
Deposit date:2014-04-27
Release date:2014-06-25
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution NMR Structure and Functional Analysis of the Integral Membrane Protein YgaP from Escherichia coli.
J.Biol.Chem., 289, 2014

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