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7M4N
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BU of 7m4n by Molmil
Crystal structure of RBR E3 ligase RNF216 in complex with K63-linked di-ubiquitin
分子名称: E3 ubiquitin-protein ligase RNF216, GLYCEROL, SULFATE ION, ...
著者Cotton, T.R, Lechtenberg, B.C.
登録日2021-03-21
公開日2022-01-05
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.52 Å)
主引用文献Structural basis of K63-ubiquitin chain formation by the Gordon-Holmes syndrome RBR E3 ubiquitin ligase RNF216.
Mol.Cell, 82, 2022
7M4O
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BU of 7m4o by Molmil
Crystal structure of phosphorylated RBR E3 ligase RNF216 in complex with K63-linked di-ubiquitin
分子名称: 2-(2-METHOXYETHOXY)ETHANOL, E3 ubiquitin-protein ligase RNF216, GLYCEROL, ...
著者Cotton, T.R, Lechtenberg, B.C.
登録日2021-03-21
公開日2022-01-05
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.21 Å)
主引用文献Structural basis of K63-ubiquitin chain formation by the Gordon-Holmes syndrome RBR E3 ubiquitin ligase RNF216.
Mol.Cell, 82, 2022
7M4M
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BU of 7m4m by Molmil
Crystal structure of RBR E3 ligase RNF216 with ubiquitin
分子名称: E3 ubiquitin-protein ligase RNF216, GLYCEROL, Ubiquitin, ...
著者Cotton, T.R, Lechtenberg, B.C.
登録日2021-03-21
公開日2022-01-05
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.39 Å)
主引用文献Structural basis of K63-ubiquitin chain formation by the Gordon-Holmes syndrome RBR E3 ubiquitin ligase RNF216.
Mol.Cell, 82, 2022
3RUL
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BU of 3rul by Molmil
New strategy to analyze structures of glycopeptide-target complexes
分子名称: 10-METHYLUNDECANOIC ACID, 2-amino-2-deoxy-beta-D-glucopyranuronic acid, CHLORIDE ION, ...
著者Economou, N.J, Nahoum, V, Weeks, S.D, Grasty, K.C, Loll, P.J.
登録日2011-05-05
公開日2012-06-06
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献A carrier protein strategy yields the structure of dalbavancin.
J.Am.Chem.Soc., 134, 2012
3U30
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BU of 3u30 by Molmil
Crystal structure of a linear-specific Ubiquitin fab bound to linear ubiquitin
分子名称: Heavy chain Fab, Light chain Fab, linear di-ubiquitin
著者Matsumoto, M.L, Dong, K.C, Yu, C, Phu, L, Gao, X, Hannoush, R.N, Hymowitz, S.G, Kirkpatrick, D.S, Dixit, V.M, Kelley, R.F.
登録日2011-10-04
公開日2012-01-18
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.428 Å)
主引用文献Engineering and structural characterization of a linear polyubiquitin-specific antibody.
J.Mol.Biol., 418, 2012
1WX9
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BU of 1wx9 by Molmil
Solution Structure of the N-terminal Ubiquitin-like Domain in the Human BAT3 Protein
分子名称: HLA-B associated transcript-3 isoform b
著者Zhao, C, Saito, K, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-01-20
公開日2005-07-20
最終更新日2022-03-02
実験手法SOLUTION NMR
主引用文献Solution Structure of the N-terminal Ubiquitin-like Domain in the Human BAT3 Protein
To be Published
1WE6
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BU of 1we6 by Molmil
Solution structure of Ubiquitin-like domain in splicing factor AAL91182
分子名称: splicing factor, putative
著者He, F, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-05-24
公開日2004-11-24
最終更新日2022-03-02
実験手法SOLUTION NMR
主引用文献Solution structure of Ubiquitin-like domain in splicing factor AAL91182
To be Published
5NLI
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BU of 5nli by Molmil
Crystal structure of Zn2-E16V human ubiquitin (hUb) mutant adduct, from a solution 35 mM zinc acetate/10% v/v TFE/1.3 mM E16V hUb
分子名称: 1,2-ETHANEDIOL, ACETATE ION, Polyubiquitin-C, ...
著者Fermani, S, Falini, G.
登録日2017-04-04
公開日2017-05-03
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.53 Å)
主引用文献Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium.
Chemistry, 24, 2018
1WIA
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BU of 1wia by Molmil
Solution structure of mouse hypothetical ubiquitin-like protein BAB25500
分子名称: hypothetical ubiquitin-like protein (RIKEN cDNA 2010008E23)
著者Suzuki, S, Muto, Y, Inoue, M, Kigawa, T, Hayashi, F, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-05-28
公開日2004-11-28
最終更新日2022-03-02
実験手法SOLUTION NMR
主引用文献Solution structure of mouse hypothetical ubiquitin-like protein BAB25500
To be Published
1WGD
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BU of 1wgd by Molmil
Solution structure of the Ubl-domain of Herp
分子名称: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein
著者Nakanishi, T, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-05-28
公開日2004-11-28
最終更新日2022-03-02
実験手法SOLUTION NMR
主引用文献Solution structure of the Ubl-domain of Herp
To be Published
5N9V
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BU of 5n9v by Molmil
NMR solution structure of ubl5 domain from polyubiquitin locus of T.thermophila.
分子名称: NAD(P)(+)--arginine ADP-ribosyltransferase
著者Chiarini, V, Tossavainen, H.
登録日2017-02-27
公開日2018-03-21
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献NMR structure of a non-conjugatable, ADP-ribosylation associated, ubiquitin-like domain from Tetrahymena thermophila polyubiquitin locus.
Biochim Biophys Acta Gen Subj, 1863, 2019
1WXV
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BU of 1wxv by Molmil
Solution structure of the ubiquitin domain of BCL-2 binding athanogene-1
分子名称: BAG-family molecular chaperone regulator-1
著者Niraula, T.N, Muto, Y, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-02-02
公開日2005-08-02
最終更新日2022-03-02
実験手法SOLUTION NMR
主引用文献Solution structure of the ubiquitin domain of BCL-2 binding athanogene-1
To be Published
1WR1
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BU of 1wr1 by Molmil
The complex structure of Dsk2p UBA with ubiquitin
分子名称: Ubiquitin, Ubiquitin-like protein DSK2
著者Ohno, A, Jee, J.G, Fujiwara, K, Tenno, T, Goda, N, Tochio, H, Hiroaki, H, kobayashi, H, Shirakawa, M.
登録日2004-10-08
公開日2005-04-19
最終更新日2023-09-27
実験手法SOLUTION NMR
主引用文献Structure of the UBA domain of Dsk2p in complex with ubiquitin molecular determinants for ubiquitin recognition.
Structure, 13, 2005
1X1M
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BU of 1x1m by Molmil
Solution Structure of the N-terminal Ubiquitin-like Domain in Mouse Ubiquitin-like Protein SB132
分子名称: Ubiquitin-like protein SB132
著者Zhao, C, Tomizawa, T, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-04-07
公開日2005-10-07
最終更新日2022-03-02
実験手法SOLUTION NMR
主引用文献Solution Structure of the N-terminal Ubiquitin-like Domain in Mouse Ubiquitin-like Protein SB132
To be Published
5NMC
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BU of 5nmc by Molmil
Crystal structure of Zn3-hUb(human ubiquitin) adduct from a solution 70 mM zinc acetate/20% v/v TFE/1.3 mM hUb
分子名称: ACETATE ION, Polyubiquitin-C, ZINC ION
著者Fermani, S, Falini, G.
登録日2017-04-05
公開日2017-05-03
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium.
Chemistry, 24, 2018
1WX8
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BU of 1wx8 by Molmil
Solution Structure of the N-terminal Ubiquitin-like Domain in the 4931431F19Rik Protein
分子名称: RIKEN cDNA 4931431F19
著者Zhao, C, Tomizawa, T, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-01-20
公開日2005-07-20
最終更新日2022-03-02
実験手法SOLUTION NMR
主引用文献Solution Structure of the N-terminal Ubiquitin-like Domain in the 4931431F19Rik Protein
To be Published
5NL5
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BU of 5nl5 by Molmil
Crystal structure of Zn1.7-E16V human ubiquitin (hUb) mutant adduct, from a solution 70 mM zinc acetate/1.3 mM E16V hUb
分子名称: 1,2-ETHANEDIOL, ACETATE ION, Polyubiquitin-B, ...
著者Fermani, S, Falini, G.
登録日2017-04-04
公開日2017-04-26
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium.
Chemistry, 24, 2018
5NLF
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BU of 5nlf by Molmil
Crystal structure of Zn2.7-E16V human ubiquitin (hUb) mutant adduct, from a solution 100 mM zinc acetate/1.3 mM E16V hUb
分子名称: ACETATE ION, Polyubiquitin-C, ZINC ION
著者Fermani, S, Falini, G.
登録日2017-04-04
公開日2017-05-03
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium.
Chemistry, 24, 2018
5NLJ
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BU of 5nlj by Molmil
Crystal structure of Zn3-E16V human ubiquitin (hUb) mutant adduct, from a solution 70 mM zinc acetate/20% v/v TFE/1.3 mM E16V hUb
分子名称: 1,2-ETHANEDIOL, ACETATE ION, DI(HYDROXYETHYL)ETHER, ...
著者Fermani, S, Falini, G.
登録日2017-04-04
公開日2017-04-26
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.53 Å)
主引用文献Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium.
Chemistry, 24, 2018
1WE7
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BU of 1we7 by Molmil
Solution structure of Ubiquitin-like domain in SF3a120
分子名称: Sf3a1 protein
著者He, F, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-05-24
公開日2004-11-24
最終更新日2022-03-02
実験手法SOLUTION NMR
主引用文献Solution structure of Ubiquitin-like domain in SF3a120
To be Published
5O44
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BU of 5o44 by Molmil
Crystal structure of unbranched mixed tri-Ubiquitin chain containing K48 and K63 linkages.
分子名称: MAGNESIUM ION, Polyubiquitin-B, SULFATE ION, ...
著者Padala, P, Isupov, M.N, Wiener, R.
登録日2017-05-26
公開日2017-11-08
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (3.14 Å)
主引用文献The Crystal Structure and Conformations of an Unbranched Mixed Tri-Ubiquitin Chain Containing K48 and K63 Linkages.
J. Mol. Biol., 429, 2017
1WH3
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BU of 1wh3 by Molmil
Solution structure of C-terminal ubiquitin like domain of human 2'-5'-oligoadenylate synthetase-like protain (p59 OASL)
分子名称: 59 kDa 2'-5'-oligoadenylate synthetase like protein
著者Tochio, N, Tomizawa, T, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-05-28
公開日2004-11-28
最終更新日2022-03-02
実験手法SOLUTION NMR
主引用文献Solution structure of C-terminal ubiquitin like domain of human 2'-5'-oligoadenylate synthetase-like protain (p59 OASL)
To be Published
1WX7
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BU of 1wx7 by Molmil
Solution Structure of the N-terminal Ubiquitin-like Domain in the Human Ubiquilin 3 (UBQLN3)
分子名称: Ubiquilin 3
著者Zhao, C, Saito, K, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-01-20
公開日2005-07-20
最終更新日2022-03-02
実験手法SOLUTION NMR
主引用文献Solution Structure of the N-terminal Ubiquitin-like Domain in the Human Ubiquilin 3 (UBQLN3)
To be Published
5NVG
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BU of 5nvg by Molmil
Thr12 Phosphorylated Ubiquitin
分子名称: DI(HYDROXYETHYL)ETHER, PHOSPHATE ION, Polyubiquitin-B
著者Huguenin-Dezot, N.
登録日2017-05-04
公開日2017-05-31
最終更新日2017-09-13
実験手法X-RAY DIFFRACTION (1.07 Å)
主引用文献Biosynthesis and genetic encoding of phosphothreonine through parallel selection and deep sequencing.
Nat. Methods, 14, 2017
1WY8
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BU of 1wy8 by Molmil
Solution Structure of the N-terminal Ubiquitin-like Domain in Human Np95/ICBP90-like Ring Finger Protein (NIRF)
分子名称: Np95-like ring finger protein, isoform a
著者Zhao, C, Saito, K, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-02-09
公開日2005-08-09
最終更新日2022-03-02
実験手法SOLUTION NMR
主引用文献Solution Structure of the N-terminal Ubiquitin-like Domain in Human Np95/ICBP90-like Ring Finger Protein (NIRF)
To be Published

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