PDB: 799 resultsInfo pagesStatus searchChemie searchBIRD

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3LJA	Using Soft X-Rays for a Detailed Picture of Divalent Metal Binding in the Nucleosome Descriptor: 147mer DNA, Histone H2A, Histone H2B 1.1, ... Authors: Wu, B, Davey, C.A. Deposit date: 2010-01-26 Release date: 2010-04-14 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.75 Å) Cite: Using soft X-rays for a detailed picture of divalent metal binding in the nucleosome J.Mol.Biol., 398, 2010
3LEL	Structural Insight into the Sequence-Dependence of Nucleosome Positioning Descriptor: 147-MER DNA, Histone H2A, Histone H2B 1.1, ... Authors: Wu, B, Vasudevan, D, Davey, C.A. Deposit date: 2010-01-15 Release date: 2010-05-19 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.95 Å) Cite: Structural insight into the sequence dependence of nucleosome positioning Structure, 18, 2010
1M1A	LIGAND BINDING ALTERS THE STRUCTURE AND DYNAMICS OF NUCLEOSOMAL DNA Descriptor: 3-AMINO-(DIMETHYLPROPYLAMINE), 4-AMINO-(1-METHYLIMIDAZOLE)-2-CARBOXYLIC ACID, 4-AMINO-(1-METHYLPYRROLE)-2-CARBOXYLIC ACID, ... Authors: Suto, R.K, Edayathumangalam, R.S, White, C.L, Melander, C, Gottesfeld, J.M, Dervan, P.B, Luger, K. Deposit date: 2002-06-18 Release date: 2003-02-18 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.65 Å) Cite: Crystal Structures of Nucleosome Core Particles in Complex with Minor Groove DNA-binding Ligands J.MOL.BIOL., 326, 2003
3LZ0	Crystal Structure of Nucleosome Core Particle Composed of the Widom 601 DNA Sequence (orientation 1) Descriptor: CHLORIDE ION, DNA (145-MER), Histone H2A, ... Authors: Vasudevan, D, Chua, E.Y.D, Davey, C.A. Deposit date: 2010-03-01 Release date: 2010-09-15 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Crystal structures of nucleosome core particles containing the '601' strong positioning sequence J.Mol.Biol., 403, 2010
3LZ1	Crystal Structure of Nucleosome Core Particle Composed of the Widom 601 DNA Sequence (orientation 2) Descriptor: CHLORIDE ION, DNA (145-MER), Histone H2A, ... Authors: Vasudevan, D, Chua, E.Y.D, Davey, C.A. Deposit date: 2010-03-01 Release date: 2010-09-15 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Crystal structures of nucleosome core particles containing the '601' strong positioning sequence J.Mol.Biol., 403, 2010
1N1J	Crystal structure of the NF-YB/NF-YC histone pair Descriptor: NF-YB, NF-YC Authors: Romier, C, Cocchiarella, F, Mantovani, R, Moras, D. Deposit date: 2002-10-18 Release date: 2003-02-18 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.67 Å) Cite: The NF-YB/NF-YC structure gives insight into DNA binding and transcription regulation by CCAAT factor NF-Y J.Biol.Chem., 278, 2003
3MGR	Binding of Rubidium ions to the Nucleosome Core Particle Descriptor: CHLORIDE ION, DNA (147-MER), Histone H2A, ... Authors: Mohideen, K, Muhammad, R, Davey, C.A. Deposit date: 2010-04-07 Release date: 2010-06-16 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Perturbations in nucleosome structure from heavy metal association. Nucleic Acids Res., 38, 2010
3MGP	Binding of Cobalt ions to the Nucleosome Core Particle Descriptor: CHLORIDE ION, COBALT (II) ION, DNA (147-MER), ... Authors: Mohideen, K, Muhammad, R, Davey, C.A. Deposit date: 2010-04-07 Release date: 2010-06-16 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.44 Å) Cite: Perturbations in nucleosome structure from heavy metal association. Nucleic Acids Res., 38, 2010
3MGS	Binding of Cesium ions to the Nucleosome Core particle Descriptor: CESIUM ION, CHLORIDE ION, DNA (147-MER), ... Authors: Mohideen, K, Muhammad, R, Davey, C.A. Deposit date: 2010-04-07 Release date: 2010-06-16 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (3.15 Å) Cite: Perturbations in nucleosome structure from heavy metal association. Nucleic Acids Res., 2010
3MGQ	Binding of Nickel ions to the Nucleosome Core Particle Descriptor: CHLORIDE ION, DNA (147-MER), Histone H2A, ... Authors: Mohideen, K, Muhammad, R, Davey, C.A. Deposit date: 2010-04-07 Release date: 2010-06-16 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.65 Å) Cite: Perturbations in nucleosome structure from heavy metal association. Nucleic Acids Res., 38, 2010
3MNN	A Ruthenium Antitumour Agent Forms Specific Histone Protein Adducts in the Nucleosome Core Descriptor: 1,3,5-triaza-7-phosphatricyclo[3.3.1.1~3,7~]decane, 1-methyl-4-(1-methylethyl)benzene, DNA (145-MER), ... Authors: Ong, M.S, Davey, C.A. Deposit date: 2010-04-22 Release date: 2011-04-06 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.5 Å) Cite: A ruthenium antimetastasis agent forms specific histone protein adducts in the nucleosome core Chemistry, 17, 2011
3MVD	Crystal structure of the chromatin factor RCC1 in complex with the nucleosome core particle Descriptor: DNA (146-MER), Histone H2A, Histone H2B 1.1, ... Authors: Makde, R.D, England, J.R, Yennawar, H.P, Tan, S. Deposit date: 2010-05-04 Release date: 2010-08-25 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Structure of RCC1 chromatin factor bound to the nucleosome core particle. Nature, 467, 2010
3NQJ	Crystal structure of (CENP-A/H4)2 heterotetramer Descriptor: Histone H3-like centromeric protein A, Histone H4, PHOSPHATE ION Authors: Sekulic, N, Black, B.E. Deposit date: 2010-06-29 Release date: 2010-08-25 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.1 Å) Cite: The structure of (CENP-A-H4)(2) reveals physical features that mark centromeres. Nature, 467, 2010
1P3L	Crystallographic Studies of Nucleosome Core Particles containing Histone 'Sin' Mutants Descriptor: Histone H2A, Histone H2B, Histone H3, ... Authors: Muthurajan, U.M, Bao, Y, Forsberg, L.J, Edayathumangalam, R.S, Dyer, P.N, White, C.L, Luger, K. Deposit date: 2003-04-17 Release date: 2004-02-24 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Crystal structures of histone Sin mutant nucleosomes reveal altered protein-DNA interactions EMBO J., 23, 2004
1P34	Crystallographic Studies of Nucleosome Core Particles containing Histone 'Sin' Mutants Descriptor: Histone H2A, Histone H2B, Histone H3, ... Authors: Muthurajan, U.M, Bao, Y, Forsberg, L.J, Edayathumangalam, R.S, Dyer, P.N, White, C.L, Luger, K. Deposit date: 2003-04-17 Release date: 2004-02-24 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Crystal structures of histone Sin mutant nucleosomes reveal altered protein-DNA interactions EMBO J., 23, 2004
1P3M	Crystallographic Studies of Nucleosome Core Particles containing Histone 'Sin' Mutants Descriptor: Histone H2A, Histone H2B, Histone H3, ... Authors: Muthurajan, U.M, Bao, Y, Forsberg, L.J, Edayathumangalam, R.S, Dyer, P.N, White, C.L, Luger, K. Deposit date: 2003-04-17 Release date: 2004-02-24 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Crystal structures of histone Sin mutant nucleosomes reveal altered protein-DNA interactions EMBO J., 23, 2004
3NQU	Crystal structure of partially trypsinized (CENP-A/H4)2 heterotetramer Descriptor: Histone H3-like centromeric protein A, Histone H4, SULFATE ION Authors: Sekulic, N, Black, B.E. Deposit date: 2010-06-29 Release date: 2010-08-25 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.5 Å) Cite: The structure of (CENP-A-H4)(2) reveals physical features that mark centromeres. Nature, 467, 2010
1P3I	Crystallographic Studies of Nucleosome Core Particles containing Histone 'Sin' Mutants Descriptor: Histone H2A, Histone H2B, Histone H3, ... Authors: Muthurajan, U.M, Bao, Y, Forsberg, L.J, Edayathumangalam, R.S, Dyer, P.N, White, C.L, Luger, K. Deposit date: 2003-04-17 Release date: 2004-02-24 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Crystal structures of histone Sin mutant nucleosomes reveal altered protein-DNA interactions EMBO J., 23, 2004
1P3P	Crystallographic Studies of Nucleosome Core Particles containing Histone 'Sin' Mutants Descriptor: Histone H2A, Histone H2B, Histone H3, ... Authors: Muthurajan, U.M, Bao, Y, Forsberg, L.J, Edayathumangalam, R.S, Dyer, P.N, White, C.L, Luger, K. Deposit date: 2003-04-17 Release date: 2004-02-24 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Crystal structures of histone Sin mutant nucleosomes reveal altered protein-DNA interactions EMBO J., 23, 2004
1P3G	Crystallographic Studies of Nucleosome Core Particles containing Histone 'Sin' Mutants Descriptor: Histone H2A, Histone H2B, Histone H3, ... Authors: Muthurajan, U.M, Bao, Y, Forsberg, L.J, Edayathumangalam, R.S, Dyer, P.N, White, C.L, Luger, K. Deposit date: 2003-04-17 Release date: 2004-02-24 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Crystal structures of histone Sin mutant nucleosomes reveal altered protein-DNA interactions EMBO J., 23, 2004
1P3A	Crystallographic Studies of Nucleosome Core Particles containing Histone 'Sin' Mutants Descriptor: Histone H2A, Histone H2B, Histone H3, ... Authors: Muthurajan, U.M, Bao, Y, Forsberg, L.J, Edayathumangalam, R.S, Dyer, P.N, White, C.L, Luger, K. Deposit date: 2003-04-17 Release date: 2004-02-24 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (3 Å) Cite: Crystal structures of histone Sin mutant nucleosomes reveal altered protein-DNA interactions EMBO J., 23, 2004
1P3K	Crystallographic Studies of Nucleosome Core Particles containing Histone 'Sin' Mutants Descriptor: Histone H2A, Histone H2B, Histone H3, ... Authors: Muthurajan, U.M, Bao, Y, Forsberg, L.J, Edayathumangalam, R.S, Dyer, P.N, White, C.L, Luger, K. Deposit date: 2003-04-17 Release date: 2004-02-24 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Crystal structures of histone Sin mutant nucleosomes reveal altered protein-DNA interactions EMBO J., 23, 2004
7ZSB	Yeast RNA polymerase II transcription pre-initiation complex with the +1 nucleosome and NTP, complex C Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... Authors: Wang, H, Cramer, P. Deposit date: 2022-05-06 Release date: 2022-11-16 Last modified: 2023-03-01 Method: ELECTRON MICROSCOPY (6.6 Å) Cite: Structures of transcription preinitiation complex engaged with the +1 nucleosome. Nat.Struct.Mol.Biol., 30, 2023
7ZSA	Yeast RNA polymerase II transcription pre-initiation complex with the +1 nucleosome and NTP (complex B) Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... Authors: Wang, H, Cramer, P. Deposit date: 2022-05-06 Release date: 2022-11-16 Last modified: 2023-03-01 Method: ELECTRON MICROSCOPY (4 Å) Cite: Structures of transcription preinitiation complex engaged with the +1 nucleosome. Nat.Struct.Mol.Biol., 30, 2023
7ZS9	Yeast RNA polymerase II transcription pre-initiation complex with the +1 nucleosome (complex A) Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... Authors: Wang, H, Cramer, P. Deposit date: 2022-05-06 Release date: 2022-11-16 Last modified: 2023-03-01 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structures of transcription preinitiation complex engaged with the +1 nucleosome. Nat.Struct.Mol.Biol., 30, 2023

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