PDB: 186 件ウェブページステータス検索Chemie searchBIRD

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3NAU	Crystal structure of ZHX2 HD2 (zinc-fingers and homeoboxes protein 2, homeodomain 2) 分子名称: SULFATE ION, Zinc fingers and homeoboxes protein 2 著者 Ren, J, Bird, L.E, Owens, R.J, Stammers, D.K, Oxford Protein Production Facility (OPPF) 登録日 2010-06-02 公開日 2010-07-07 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Novel structural features in two ZHX homeodomains derived from a systematic study of single and multiple domains Bmc Struct.Biol., 10, 2010
7PSX	Structure of HOXB13 bound to hydroxymethylated DNA 分子名称: DNA (5'-D(P*GP*GP*AP*CP*CP*TP*5HCP*AP*TP*AP*AP*AP*AP*CP*AP*CP*AP*A)-3'), DNA (5'-D(P*TP*TP*GP*TP*GP*TP*TP*TP*TP*AP*CP*GP*AP*GP*GP*TP*CP*C)-3'), Homeobox protein Hox-B13, ... 著者 Morgunova, E, Popov, A, Yin, Y, Taipale, J. 登録日 2021-09-24 公開日 2022-10-05 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structure of HOXB13 bound to hydroxymethylated DNA To Be Published
7Q3O	Structure of CDX1 bound to hydroxymethylated DNA 分子名称: Homeobox protein CDX-1, hydroxymethylated DNA (18-MER) 著者 Morgunova, E, Yin, Y, Popov, A, Taipale, J. 登録日 2021-10-28 公開日 2022-11-16 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.78 Å) 主引用文献 Structure of CDX1 bound to hydroxymethylated DNA To Be Published
4UUT	Crystal structure of the Ultrabithorax protein 分子名称: CHLORIDE ION, HOMEOTIC PROTEIN ULTRABITHORAX, SULFATE ION 著者 Foos, N, Mate, M.J, Ortiz-Lombardia, M. 登録日 2014-07-31 公開日 2015-02-18 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 A Flexible Extension of the Drosophila Ultrabithorax Homeodomain Defines a Novel Hox/Pbc Interaction Mode. Structure, 23, 2015
7Q4N	transcription factor CDX2 bound to hydroxymethylated DNA 分子名称: DNA (18-MER), Homeobox protein CDX-2 著者 Morgunova, E, Yin, Y, Popov, A, Taipale, J. 登録日 2021-11-01 公開日 2022-11-16 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 transcription factor CDX2 bound to hydroxymethylated DNA To Be Published
1QRY	Homeobox protein VND (ventral nervous system defective protein) 分子名称: PROTEIN (HOMEOBOX VENTRAL NERVOUS SYSTEM DEFECTIVE PROTEIN) 著者 Xiang, B. 登録日 1999-06-16 公開日 1999-07-06 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Distortion of the three-dimensional structure of the vnd/NK-2 homeodomain bound to DNA induced by an embryonically lethal A35T point mutation. Biochemistry, 42, 2003
1WI3	Solution structure of the homeodomain of KIAA1034 protein 分子名称: DNA-binding protein SATB2 著者 Izumi, K, Yoshida, M, Hayashi, F, Hatta, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2004-05-28 公開日 2004-11-28 最終更新日 2022-03-02 実験手法 SOLUTION NMR 主引用文献 Solution structure of the homeodomain of KIAA1034 protein TO BE PUBLISHED
1X2M	Solution structure of the homeobox domain of mouse LAG1 longevity assurance homolog 6 分子名称: LAG1 longevity assurance homolog 6 著者 Kamatari, Y.O, Tomizawa, T, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2005-04-26 公開日 2005-10-26 最終更新日 2022-03-02 実験手法 SOLUTION NMR 主引用文献 Solution structure of the homeobox domain of mouse LAG1 longevity assurance homolog 6 To be Published
4XID	AntpHD with 15bp DNA duplex 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, DNA (5'-D(*AP*GP*AP*AP*AP*GP*CP*CP*AP*TP*TP*AP*GP*AP*G)-3'), DNA (5'-D(*TP*CP*TP*CP*TP*AP*AP*TP*GP*GP*CP*TP*TP*TP*C)-3'), ... 著者 White, M.A, Zandarashvili, L, Iwahara, J. 登録日 2015-01-06 公開日 2015-11-25 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.701 Å) 主引用文献 Entropic Enhancement of Protein-DNA Affinity by Oxygen-to-Sulfur Substitution in DNA Phosphate. Biophys.J., 109, 2015
4XIC	ANTPHD WITH 15BP di-thioate modified DNA DUPLEX 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, DNA (5'-D(*AP*GP*AP*AP*AP*GP*CP*(C2S)P*AP*TP*TP*AP*GP*AP*G)-3'), DNA (5'-D(*TP*CP*TP*CP*TP*AP*AP*TP*GP*GP*CP*TP*TP*TP*C)-3'), ... 著者 White, M.A, Zandarashvili, L, Iwahara, J. 登録日 2015-01-06 公開日 2015-11-25 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.69 Å) 主引用文献 Entropic Enhancement of Protein-DNA Affinity by Oxygen-to-Sulfur Substitution in DNA Phosphate. Biophys.J., 109, 2015
1SAN	THE DES(1-6)ANTENNAPEDIA HOMEODOMAIN: COMPARISON OF THE NMR SOLUTION STRUCTURE AND THE DNA BINDING AFFINITY WITH THE INTACT ANTENNAPEDIA HOMEODOMAIN 分子名称: ANTENNAPEDIA PROTEIN 著者 Qian, Y.Q, Resendez-Perez, D, Gehring, W.J, Wuthrich, K. 登録日 1994-01-07 公開日 1994-04-30 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 The des(1-6)antennapedia homeodomain: comparison of the NMR solution structure and the DNA-binding affinity with the intact Antennapedia homeodomain. Proc.Natl.Acad.Sci.USA, 91, 1994
1YRN	CRYSTAL STRUCTURE OF THE MATA1/MATALPHA2 HOMEODOMAIN HETERODIMER BOUND TO DNA 分子名称: DNA (5'-D(*TP*AP*CP*AP*TP*GP*TP*AP*AP*TP*TP*TP*AP*TP*TP*AP*C P*AP*TP*CP*A)-3'), DNA (5'-D(*TP*AP*TP*GP*AP*TP*GP*TP*AP*AP*TP*AP*AP*AP*TP*TP*A P*CP*AP*TP*G)-3'), PROTEIN (MAT A1 HOMEODOMAIN), ... 著者 Li, T, Stark, M.R, Johnson, A.D, Wolberger, C. 登録日 1995-11-02 公開日 1996-01-29 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Crystal structure of the MATa1/MAT alpha 2 homeodomain heterodimer bound to DNA. Science, 270, 1995
8EJO	Crystal structure of the homeodomain of Platypus sDUX in complex with DNA 分子名称: 1,2-ETHANEDIOL, DNA (5'-D(*GP*CP*GP*TP*AP*AP*TP*CP*TP*AP*AP*TP*CP*AP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*TP*GP*AP*TP*TP*AP*GP*AP*TP*TP*AP*CP*GP*C)-3'), ... 著者 Yin, L.L, Shi, K, Aihara, H. 登録日 2022-09-18 公開日 2023-09-20 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.67 Å) 主引用文献 Antagonism among DUX family members evolved from an ancestral toxic single homeodomain protein. Iscience, 26, 2023
8EJP	Crystal structure of the homeodomain of Platypus sDUX in complex with DNA containing 5-Bromouracil 分子名称: 1,2-ETHANEDIOL, DNA (5'-D(*GP*CP*GP*TP*AP*AP*TP*CP*TP*AP*AP*TP*CP*AP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*TP*GP*AP*TP*TP*AP*GP*AP*TP*TP*AP*CP*GP*C)-3'), ... 著者 Yin, L.L, Shi, K, Aihara, H. 登録日 2022-09-18 公開日 2023-09-20 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.174 Å) 主引用文献 Antagonism among DUX family members evolved from an ancestral toxic single homeodomain protein. Iscience, 26, 2023
8F36	Ubx Homeodomain NMR solution structure 分子名称: Homeotic protein ultrabithorax 著者 Beasley, S.A, Loss, J.W, Mekkaoui, F, Advocate, M.R, Spratt, D.E. 登録日 2022-11-09 公開日 2023-04-19 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Ubx Homeodomain NMR solution structure To Be Published
8F37	AbdA Homeodomain NMR Solution Structure 分子名称: Homeobox protein abdominal-A 著者 Beasley, S.A, Simons, R.A, Advocate, M.R, Mekkaoui, F, Spratt, D.E. 登録日 2022-11-09 公開日 2023-04-19 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 AbdA Homeodomain NMR solution structure To Be Published
8EML	Crystal Structure of Gsx2 Homeodomain in Complex with DNA 分子名称: DNA (5'-D(P*GP*AP*GP*CP*TP*AP*AP*TP*TP*AP*AP*AP*GP*C)-3'), DNA (5'-D(P*GP*CP*TP*TP*TP*AP*AP*TP*TP*AP*GP*CP*TP*C)-3'), GS homeobox 2, ... 著者 Webb, J.A, Kovall, R.A. 登録日 2022-09-28 公開日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.21 Å) 主引用文献 Crystal Structure of Gsx2 Homeodomain in Complex with DNA To Be Published
1ZQ3	NMR Solution Structure of the Bicoid Homeodomain Bound to the Consensus DNA Binding Site TAATCC 分子名称: 5'-D(*CP*GP*GP*GP*GP*AP*TP*TP*AP*GP*AP*GP*C)-3', 5'-D(*GP*CP*TP*CP*TP*AP*AP*TP*CP*CP*CP*CP*G)-3', Homeotic bicoid protein 著者 Baird-Titus, J.M, Rance, M, Clark-Baldwin, K, Ma, J, Vrushank, D. 登録日 2005-05-18 公開日 2006-02-14 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 The solution structure of the native K50 Bicoid homeodomain bound to the consensus TAATCC DNA-binding site. J.Mol.Biol., 356, 2006
1ZTR	Solution structure of Engrailed homeodomain L16A mutant 分子名称: Segmentation polarity homeobox protein engrailed 著者 Religa, T.L, Markson, J.S, Mayor, U, Freund, S.M.V, Fersht, A.R. 登録日 2005-05-27 公開日 2005-10-18 最終更新日 2021-11-10 実験手法 SOLUTION NMR 主引用文献 Solution structure of a protein denatured state and folding intermediate. Nature, 437, 2005
5EF6	Structure of HOXB13 complex with methylated DNA 分子名称: DNA (5'-D(P*GP*GP*AP*CP*CP*TP*(5CM)P*GP*TP*AP*AP*AP*AP*CP*AP*CP*AP*A)-3'), DNA (5'-D(P*TP*TP*GP*TP*GP*TP*TP*TP*TP*AP*(5CM)P*GP*AP*GP*GP*TP*CP*C)-3'), Homeobox protein Hox-B13 著者 Morgunova, E, Yin, Y, Jolma, A, Popov, A, Taipale, J. 登録日 2015-10-23 公開日 2017-02-08 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science, 356, 2017
1UHS	Solution structure of mouse homeodomain-only protein HOP 分子名称: homeodomain only protein 著者 Saito, K, Koshiba, S, Inoue, M, Shirouzu, M, Terada, T, Yabuki, T, Aoki, M, Matsuda, T, Seki, E, Hirota, H, Yoshida, M, Tanaka, A, Osanai, T, Arakawa, T, Carninci, P, Kawai, J, Hayashizaki, Y, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2003-07-10 公開日 2004-07-10 最終更新日 2023-12-27 実験手法 SOLUTION NMR 主引用文献 Solution structure of mouse homeodomain-only protein HOP To be Published
5EEA	Structure of HOXB13-DNA(CAA) complex 分子名称: DNA (5'-D(P*GP*GP*AP*CP*CP*CP*AP*AP*TP*AP*AP*AP*AP*CP*AP*CP*AP*A)-3'), DNA (5'-D(P*TP*TP*GP*TP*GP*TP*TP*TP*TP*AP*TP*TP*GP*GP*GP*TP*CP*C)-3'), Homeobox protein Hox-B13 著者 Morgunova, E, Yin, Y, Jolma, A, Popov, A, Taipale, J. 登録日 2015-10-22 公開日 2016-10-26 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.195 Å) 主引用文献 Two distinct DNA sequences recognized by transcription factors represent enthalpy and entropy optima. Elife, 7, 2018
5EDN	Structure of HOXB13-DNA(TCG) complex 分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DNA (5'-D(P*GP*GP*AP*CP*CP*TP*CP*GP*TP*AP*AP*AP*AP*CP*AP*CP*AP*AP*C)-3'), DNA (5'-D(P*GP*TP*TP*GP*TP*GP*TP*TP*TP*TP*AP*CP*GP*AP*GP*GP*TP*CP*C)-3'), ... 著者 Morgunova, E, Yin, Y, Jolma, A, Popov, A, Taipale, J. 登録日 2015-10-21 公開日 2016-11-09 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Two distinct DNA sequences recognized by transcription factors represent enthalpy and entropy optima. Elife, 7, 2018
1VND	VND/NK-2 PROTEIN (HOMEODOMAIN), NMR 分子名称: VND/NK-2 PROTEIN 著者 Tsao, D.H.H, Gruschus, J.M, Wang, L.-H, Nirenberg, M, Ferretti, J.A. 登録日 1996-05-22 公開日 1996-11-08 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 The three-dimensional solution structure of the NK-2 homeodomain from Drosophila. J.Mol.Biol., 251, 1995
6RYD	WUS-HD bound to TGAA DNA 分子名称: DNA (5'-D(*AP*GP*TP*GP*TP*AP*TP*GP*AP*AP*TP*GP*AP*AP*CP*G)-3'), DNA (5'-D(*CP*GP*TP*TP*CP*AP*TP*TP*CP*AP*TP*AP*CP*AP*CP*T)-3'), MAGNESIUM ION, ... 著者 Sloan, J.J, Wild, K, Sinning, I. 登録日 2019-06-10 公開日 2020-04-29 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.575 Å) 主引用文献 Structural basis for the complex DNA binding behavior of the plant stem cell regulator WUSCHEL. Nat Commun, 11, 2020

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