Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4ODS
DownloadVisualize
BU of 4ods by Molmil
Unliganded Fab structure of lipid A-specific antibody S55-3
Descriptor: S55-3 Fab (IgG2b) heavy chain
Authors:Haji-Ghassemi, O, Evans, S.V.
Deposit date:2014-01-10
Release date:2015-07-01
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Structural Basis for Antibody Recognition of Lipid A: INSIGHTS TO POLYSPECIFICITY TOWARD SINGLE-STRANDED DNA.
J.Biol.Chem., 290, 2015
6Z5Q
DownloadVisualize
BU of 6z5q by Molmil
The RSL - sulfonato-calix[8]arene complex, P3 form, acetate pH 4.0
Descriptor: Fucose-binding lectin protein, GLYCEROL, beta-D-fructopyranose, ...
Authors:Ramberg, K, Engilberge, S, Crowley, P.B.
Deposit date:2020-05-27
Release date:2021-04-07
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.29 Å)
Cite:Facile Fabrication of Protein-Macrocycle Frameworks.
J.Am.Chem.Soc., 143, 2021
6Z5X
DownloadVisualize
BU of 6z5x by Molmil
The RSL - sulfonato-calix[8]arene complex, P213 form, acetate pH 4.8
Descriptor: Fucose-binding lectin protein, SODIUM ION, SULFATE ION, ...
Authors:Engilberge, S, Ramberg, K, Crowley, P.B.
Deposit date:2020-05-27
Release date:2021-04-07
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.14 Å)
Cite:Facile Fabrication of Protein-Macrocycle Frameworks.
J.Am.Chem.Soc., 143, 2021
4FQ8
DownloadVisualize
BU of 4fq8 by Molmil
Crystal Structure of Shikimate Dehydrogenase (aroE) Y210A Mutant from Helicobacter pylori in Complex with Shikimate
Descriptor: (3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHEX-1-ENE-1-CARBOXYLIC ACID, Shikimate dehydrogenase
Authors:Cheng, W.C, Chen, T.J, Wang, W.C.
Deposit date:2012-06-25
Release date:2012-12-26
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:

6Z5P
DownloadVisualize
BU of 6z5p by Molmil
The RSL-R8 - sulfonato-calix[8]arene complex, P3 form, TRIS-HCl pH 8.5
Descriptor: Fucose-binding lectin protein, GLYCEROL, SULFATE ION, ...
Authors:Ramberg, K, Skorek, T, Engilberge, S, Crowley, P.B.
Deposit date:2020-05-27
Release date:2021-04-07
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Facile Fabrication of Protein-Macrocycle Frameworks.
J.Am.Chem.Soc., 143, 2021
6Z5G
DownloadVisualize
BU of 6z5g by Molmil
The RSL - sulfonato-calix[8]arene complex, I23 form, citrate pH 4.0, solved by S-SAD
Descriptor: Fucose-binding lectin protein, GLYCEROL, beta-D-fructopyranose, ...
Authors:Engilberge, S, Ramberg, K, Crowley, P.B.
Deposit date:2020-05-26
Release date:2021-04-14
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.278 Å)
Cite:Facile Fabrication of Protein-Macrocycle Frameworks.
J.Am.Chem.Soc., 143, 2021
4F8Q
DownloadVisualize
BU of 4f8q by Molmil
Crystal Structure of the Human BTN3A2 Ectodomain
Descriptor: Butyrophilin subfamily 3 member A2
Authors:Palakodeti, A, Sandstrom, A, Sundaresan, L, Harly, C, Nedellec, S, Olive, D, Scotet, E, Bonneville, M, Adams, E.J.
Deposit date:2012-05-17
Release date:2012-08-08
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.3789 Å)
Cite:The molecular basis for modulation of human V(gamma)9V(delta)2 T cell responses by CD277/Butyrophilin-3 (BTN3A)-specific antibodies
J.Biol.Chem., 287, 2012
6Z5M
DownloadVisualize
BU of 6z5m by Molmil
The RSL - sulfonato-calix[8]arene complex, I23 form, Gly-HCl pH 2.2
Descriptor: Fucose-binding lectin protein, GLYCEROL, beta-D-fructopyranose, ...
Authors:Ramberg, K, Engilberge, S, Crowley, P.B.
Deposit date:2020-05-26
Release date:2021-04-14
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Facile Fabrication of Protein-Macrocycle Frameworks.
J.Am.Chem.Soc., 143, 2021
6Z5W
DownloadVisualize
BU of 6z5w by Molmil
The RSL - sulfonato-calix[8]arene complex, P213 form, MES pH 6.8
Descriptor: Fucose-binding lectin protein, SULFATE ION, beta-D-fructopyranose, ...
Authors:Engilberge, S, Ramberg, K, Crowley, P.B.
Deposit date:2020-05-27
Release date:2021-04-14
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.187 Å)
Cite:Facile Fabrication of Protein-Macrocycle Frameworks.
J.Am.Chem.Soc., 143, 2021
6Z5Z
DownloadVisualize
BU of 6z5z by Molmil
The RSL-R6 - sulfonato-calix[8]arene complex, P213 form, TRIS-HCl pH 8.5
Descriptor: Fucose-binding lectin protein, beta-D-fructopyranose, sulfonato-calix[8]arene
Authors:Ramberg, K, Engilberge, S, Crowley, P.B.
Deposit date:2020-05-27
Release date:2021-04-14
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.124 Å)
Cite:Facile Fabrication of Protein-Macrocycle Frameworks.
J.Am.Chem.Soc., 143, 2021
6Z60
DownloadVisualize
BU of 6z60 by Molmil
The RSL - sulfonato-calix[8]arene complex, P213 form, CAPS pH 9.5
Descriptor: Fucose-binding lectin protein, SULFATE ION, beta-D-fructopyranose, ...
Authors:Ramberg, K, Engilberge, S, Crowley, P.B.
Deposit date:2020-05-27
Release date:2021-04-14
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.166 Å)
Cite:Facile Fabrication of Protein-Macrocycle Frameworks.
J.Am.Chem.Soc., 143, 2021
2FXL
DownloadVisualize
BU of 2fxl by Molmil
Urate oxidase from aspergillus flavus complexed with allantoin
Descriptor: 1-(2,5-DIOXO-2,5-DIHYDRO-1H-IMIDAZOL-4-YL)UREA, Uricase
Authors:Gabison, L, Chiadmi, M, Colloc'h, N, Prange, T.
Deposit date:2006-02-06
Release date:2006-05-23
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Recapture of [S]-allantoin, the product of the two-step degradation of uric acid, by urate oxidase.
Febs Lett., 580, 2006
4WEB
DownloadVisualize
BU of 4web by Molmil
Structure of the core ectodomain of the hepatitis C virus envelope glycoprotein 2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, FORMAMIDE, Mouse Fab Heavy Chain, ...
Authors:Khan, A.G, Whidby, J, Miller, M.T, Scarborough, H, Zatorski, A.V, Cygan, A, Price, A.A, Yost, S.A, Bohannon, C.D, Jacob, J, Grakoui, A, Marcotrigiano, J.
Deposit date:2014-09-09
Release date:2014-12-17
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of the core ectodomain of the hepatitis C virus envelope glycoprotein 2.
Nature, 509, 2014
3HHU
DownloadVisualize
BU of 3hhu by Molmil
Human heat-shock protein 90 (HSP90) in complex with {4-[3-(2,4-dihydroxy-5-isopropyl-phenyl)-5-thioxo- 1,5-dihydro-[1,2,4]triazol-4-yl]-benzyl}-carbamic acid ethyl ester {ZK 2819}
Descriptor: Heat shock protein HSP 90-alpha, ethyl (4-{3-[2,4-dihydroxy-5-(1-methylethyl)phenyl]-5-sulfanyl-4H-1,2,4-triazol-4-yl}benzyl)carbamate
Authors:Adler, M, Whitlow, M.
Deposit date:2009-05-17
Release date:2009-07-14
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Potent triazolothione inhibitor of heat-shock protein-90.
Chem.Biol.Drug Des., 74, 2009
4FHK
DownloadVisualize
BU of 4fhk by Molmil
Crystal Structure of PI3K-gamma in Complex with Imidazopyridazine 19e
Descriptor: 3-[2-methyl-6-(pyrazin-2-ylamino)pyrimidin-4-yl]-N-(1H-pyrazol-3-yl)imidazo[1,2-b]pyridazin-2-amine, Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform, SULFATE ION
Authors:Shaffer, P.L, Tang, J, Yakowec, P.
Deposit date:2012-06-06
Release date:2013-04-10
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Discovery and optimization of potent and selective imidazopyridine and imidazopyridazine mTOR inhibitors.
Bioorg.Med.Chem.Lett., 22, 2012
4FK7
DownloadVisualize
BU of 4fk7 by Molmil
Crystal structure of Certhrax catalytic domain
Descriptor: CHLORIDE ION, N~2~,N~2~-DIMETHYL-N~1~-(6-OXO-5,6-DIHYDROPHENANTHRIDIN-2-YL)GLYCINAMIDE, Putative ADP-ribosyltransferase Certhrax, ...
Authors:Hong, B.S, Dimov, S, Tempel, W, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Park, H, Structural Genomics Consortium (SGC)
Deposit date:2012-06-12
Release date:2012-09-26
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Certhrax Toxin, an Anthrax-related ADP-ribosyltransferase from Bacillus cereus.
J.Biol.Chem., 287, 2012
2YDM
DownloadVisualize
BU of 2ydm by Molmil
Structural characterization of angiotensin-I converting enzyme in complex with a selenium analogue of captopril
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ANGIOTENSIN CONVERTING ENZYME, CHLORIDE ION, ...
Authors:Akif, M, Masuyer, G, Schwager, S.L.U, Bhuyan, B.J, Mugesh, G, Sturrock, E.D, Acharya, K.R.
Deposit date:2011-03-22
Release date:2011-09-14
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.44 Å)
Cite:Structural Characterization of Angiotensin-I Converting Enzyme in Complex with a Selenium Analogue of Captopril
FEBS J., 278, 2011
4FOS
DownloadVisualize
BU of 4fos by Molmil
Crystal Structure of Shikimate Dehydrogenase (aroE) Q237A Mutant from Helicobacter pylori in Complex with Shikimate
Descriptor: (3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHEX-1-ENE-1-CARBOXYLIC ACID, Shikimate dehydrogenase
Authors:Cheng, W.C, Chen, T.J, Wang, W.C.
Deposit date:2012-06-21
Release date:2012-12-26
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:

4FQC
DownloadVisualize
BU of 4fqc by Molmil
Crystal Structure of PGT121 Fab Bound to a complex-type sialylated N-glycan
Descriptor: Fab heavy chain, Fab light chain, N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Scharf, L, Bjorkman, P.J.
Deposit date:2012-06-25
Release date:2012-11-14
Last modified:2021-05-19
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Complex-type N-glycan recognition by potent broadly neutralizing HIV antibodies.
Proc.Natl.Acad.Sci.USA, 109, 2012
6QMI
DownloadVisualize
BU of 6qmi by Molmil
Phosphopantetheine adenylyltransferase from Mycobacterium tuberculosis in complex with 3-(1H-indol-1-yl)propanoic acid at 1.7A resolution.
Descriptor: 5-methyl-1-phenyl-pyrazole-4-carboxylic acid, Phosphopantetheine adenylyltransferase
Authors:Blaszczyk, M, Blundell, T.L.
Deposit date:2019-02-07
Release date:2020-02-26
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.781 Å)
Cite:Fragment linking applied to the discovery of Mycobacterium tuberculosis phosphopantetheine adenylyltransferase inhibitors
To Be Published
5DLV
DownloadVisualize
BU of 5dlv by Molmil
Crystal structure of Autotaxin (ENPP2) with tauroursodeoxycholic acid (TUDCA)
Descriptor: 2-{[(3alpha,5beta,7alpha,8alpha,14beta,17alpha)-3,7-dihydroxy-24-oxocholan-24-yl]amino}ethanesulfonic acid, CALCIUM ION, Ectonucleotide pyrophosphatase/phosphodiesterase family member 2, ...
Authors:Keune, W.J, Heidebrecht, T, von Castelmur, E, Joosten, R.P, Perrakis, A.
Deposit date:2015-09-07
Release date:2016-04-13
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:Steroid binding to Autotaxin links bile salts and lysophosphatidic acid signalling.
Nat Commun, 7, 2016
3HJ1
DownloadVisualize
BU of 3hj1 by Molmil
Minor Editosome-Associated TUTase 1 with bound UTP
Descriptor: Minor Editosome-Associated TUTase, URIDINE 5'-TRIPHOSPHATE
Authors:Stagno, J, Luecke, H.
Deposit date:2009-05-20
Release date:2010-05-12
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structure of the Mitochondrial Editosome-Like Complex Associated TUTase 1 Reveals Divergent Mechanisms of UTP Selection and Domain Organization.
J.Mol.Biol., 399, 2010
7MD7
DownloadVisualize
BU of 7md7 by Molmil
Crystal structure of the Thermus thermophilus 70S ribosome in complex with triphenylphosphonium analog of chloramphenicol CAM-C4-TPP and protein Y (YfiA) at 2.80A resolution
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 16S Ribosomal RNA, 23S Ribosomal RNA, ...
Authors:Chen, C.-W, Pavlova, J.A, Lukianov, D.A, Tereshchenkov, A.G, Makarov, G.I, Khairullina, Z.Z, Tashlitsky, V.N, Paleskava, A, Konevega, A.L, Bogdanov, A.A, Osterman, I.A, Sumbatyan, N.V, Polikanov, Y.S.
Deposit date:2021-04-03
Release date:2021-04-21
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Binding and Action of Triphenylphosphonium Analog of Chloramphenicol upon the Bacterial Ribosome.
Antibiotics, 10, 2021
6DIA
DownloadVisualize
BU of 6dia by Molmil
DNA polymerase beta substrate complex with templating cytosine and incoming Fapy-dGTP analog
Descriptor: 1-[2-amino-5-(formylamino)-6-oxo-1,6-dihydropyrimidin-4-yl]-2,5-anhydro-1,3-dideoxy-6-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-D-ribo-hexitol, CALCIUM ION, DNA (5'-D(*CP*CP*GP*AP*CP*CP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), ...
Authors:Freudenthal, B.D, Smith, M.R, Wilson, S.H, Beard, W.A.
Deposit date:2018-05-23
Release date:2019-01-30
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.969 Å)
Cite:A guardian residue hinders insertion of a Fapy•dGTP analog by modulating the open-closed DNA polymerase transition.
Nucleic Acids Res., 47, 2019
6QMF
DownloadVisualize
BU of 6qmf by Molmil
Phosphopantetheine adenylyltransferase from Mycobacterium tuberculosis in complex with 5-[3-(1H-indol-3-yl)propoxy]-1-phenyl-1H-pyrazole-4-carboxylic acid at 1.8A resolution.
Descriptor: 3-indol-1-ylpropanoic acid, DIMETHYL SULFOXIDE, Phosphopantetheine adenylyltransferase
Authors:Blaszczyk, M, Blundell, T.L.
Deposit date:2019-02-07
Release date:2020-02-26
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.771 Å)
Cite:Fragment linking applied to the discovery of Mycobacterium tuberculosis phosphopantetheine adenylyltransferase inhibitors
To Be Published

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon