PDB: 17091 resultsInfo pagesStatus searchChemie searchBIRD

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6NO3	ADP bound to V113bL mutant ATP-grasp fold of Blastocystis hominis succinyl-CoA synthetase Descriptor: ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, MAGNESIUM ION, ... Authors: Huang, J, Fraser, M.E. Deposit date: 2019-01-15 Release date: 2019-07-17 Last modified: 2020-01-08 Method: X-RAY DIFFRACTION (1.939 Å) Cite: ATP-specificity of succinyl-CoA synthetase from Blastocystis hominis. Acta Crystallogr D Struct Biol, 75, 2019
6NO6	K46bE&K114bD mutant ATP-grasp fold of Blastocystis hominis succinyl-CoA synthetase Descriptor: Succinate--CoA ligase [ADP-forming] subunit beta Authors: Huang, J, Fraser, M.E. Deposit date: 2019-01-15 Release date: 2019-07-17 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.911 Å) Cite: ATP-specificity of succinyl-CoA synthetase from Blastocystis hominis. Acta Crystallogr D Struct Biol, 75, 2019
7Z7W	REP-related Chom18 variant with double GC base pairing Descriptor: Chom18-GC DNA, STRONTIUM ION Authors: Svoboda, J, Schneider, B, Berdar, D, Kolenko, P. Deposit date: 2022-03-16 Release date: 2023-03-29 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.75 Å) Cite: Conformation-based refinement of 18-mer DNA structures. Acta Crystallogr D Struct Biol, 79, 2023
7Z82	REP-related Chom18 variant with double AG mismatch Descriptor: Chom18-AG DNA, STRONTIUM ION Authors: Svoboda, J, Kolenko, P, Berdar, D, Schneider, B. Deposit date: 2022-03-16 Release date: 2023-03-29 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Conformation-based refinement of 18-mer DNA structures. Acta Crystallogr D Struct Biol, 79, 2023
7Z7Z	REP-related Chom18 variant with double TA base pair Descriptor: Chom18-TA DNA, STRONTIUM ION Authors: Svoboda, J, Schneider, B, Berdar, D, Kolenko, P. Deposit date: 2022-03-16 Release date: 2023-03-29 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Conformation-based refinement of 18-mer DNA structures. Acta Crystallogr D Struct Biol, 79, 2023
7Z7U	REP-related Chom18 variant with double CG base pair Descriptor: Chom18-CG DNA, STRONTIUM ION Authors: Svoboda, J, Kolenko, P, Berdar, D, Schneider, B. Deposit date: 2022-03-16 Release date: 2023-03-29 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.75 Å) Cite: Conformation-based refinement of 18-mer DNA structures. Acta Crystallogr D Struct Biol, 79, 2023
7Z7L	REP-related Chom18 variant with double AC mismatch Descriptor: Chom18-AC DNA, STRONTIUM ION Authors: Svoboda, J, Schneider, B, Berdar, D, Kolenko, P. Deposit date: 2022-03-16 Release date: 2023-03-29 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Conformation-based refinement of 18-mer DNA structures. Acta Crystallogr D Struct Biol, 79, 2023
7Z7Y	REP-related Chom18 variant with double GT mismatch Descriptor: Chom18-GT DNA, STRONTIUM ION Authors: Svoboda, J, Schneider, B, Berdar, D, Kolenko, P. Deposit date: 2022-03-16 Release date: 2023-03-29 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Conformation-based refinement of 18-mer DNA structures. Acta Crystallogr D Struct Biol, 79, 2023
7Z7K	REP-related Chom18 variant with double AT base pairing Descriptor: Chom18-AT DNA, STRONTIUM ION Authors: Svoboda, J, Schneider, B, Berdar, D, Kolenko, P. Deposit date: 2022-03-16 Release date: 2023-03-29 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Conformation-based refinement of 18-mer DNA structures. Acta Crystallogr D Struct Biol, 79, 2023
7Z7M	REP-related Chom18 variant with double CC mismatch Descriptor: Chom18-CC DNA, STRONTIUM ION Authors: Svoboda, J, Schneider, B, Berdar, D, Kolenko, P. Deposit date: 2022-03-16 Release date: 2023-03-29 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Conformation-based refinement of 18-mer DNA structures. Acta Crystallogr D Struct Biol, 79, 2023
7Z81	REP-related Chom18 variant with double TC mismatch Descriptor: Chom18-TC DNA, STRONTIUM ION Authors: Svoboda, J, Schneider, B, Berdar, D, Kolenko, P. Deposit date: 2022-03-16 Release date: 2023-03-29 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.75 Å) Cite: Conformation-based refinement of 18-mer DNA structures. Acta Crystallogr D Struct Biol, 79, 2023
6RF8	Cryo-EM structure of the N-terminal DC repeat (NDC) of NDC-NDC chimera (human sequence) bound to 13-protofilament GDP-microtubule Descriptor: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... Authors: Manka, S.W. Deposit date: 2019-04-12 Release date: 2020-04-15 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: A microtubule RELION-based pipeline for cryo-EM image processing. J.Struct.Biol., 209, 2020
6NO1	ADP bound to K46bE mutant ATP-grasp fold of Blastocystis hominis succinyl-CoA synthetase Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Succinate--CoA ligase [ADP-forming] subunit beta Authors: Huang, J, Fraser, M.E. Deposit date: 2019-01-15 Release date: 2019-07-17 Last modified: 2020-01-08 Method: X-RAY DIFFRACTION (2.44 Å) Cite: ATP-specificity of succinyl-CoA synthetase from Blastocystis hominis. Acta Crystallogr D Struct Biol, 75, 2019
6TTE	Beta-galactosidase in complex with PETG Descriptor: 2-phenylethyl 1-thio-beta-D-galactopyranoside, Beta-galactosidase, MAGNESIUM ION Authors: Saur, M, Hartshorn, M.J, Dong, J, Reeks, J, Bunkoczi, G, Jhoti, H, Williams, P.A. Deposit date: 2019-12-27 Release date: 2020-01-15 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (2.2 Å) Cite: Fragment-based drug discovery using cryo-EM. Drug Discov Today, 25, 2020
6NO4	ADP bound to L227bF mutant ATP-grasp fold of Blastocystis hominis succinyl-CoA synthetase Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Succinate--CoA ligase [ADP-forming] subunit beta Authors: Huang, J, Fraser, M.E. Deposit date: 2019-01-15 Release date: 2019-07-17 Last modified: 2020-01-08 Method: X-RAY DIFFRACTION (2.24 Å) Cite: ATP-specificity of succinyl-CoA synthetase from Blastocystis hominis. Acta Crystallogr D Struct Biol, 75, 2019
6TSK	Beta-galactosidase in complex with L-ribose Descriptor: Beta-galactosidase, MAGNESIUM ION, beta-L-ribopyranose Authors: Saur, M, Hartshorn, M.J, Dong, J, Reeks, J, Bunkoczi, G, Jhoti, H, Williams, P.A. Deposit date: 2019-12-20 Release date: 2020-01-08 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (2.3 Å) Cite: Fragment-based drug discovery using cryo-EM. Drug Discov Today, 25, 2020
6T5T	Crystal structure of Archaeoglobus fulgidus Argonaute protein with cognate DNA oligoduplex 5'-pATTGTGGCCACAAT Descriptor: 5'-D(*AP*TP*TP*GP*TP*GP*GP*CP*CP*AP*CP*AP*AP*TP)-3', BETA-MERCAPTOETHANOL, CHLORIDE ION, ... Authors: Grazulis, S, Zaremba, M. Deposit date: 2019-10-17 Release date: 2020-11-18 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.7003 Å) Cite: Crystal structure of Archaeoglobus fulgidus Argonaute protein with cognate DNA oligoduplex 5'-pATTGTGGCCACAAT To be published
5TMF	Re-refinement of thermus thermophilus RNA polymerase Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Wang, J. Deposit date: 2016-10-12 Release date: 2016-11-23 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (3 Å) Cite: On the validation of crystallographic symmetry and the quality of structures. Protein Sci., 24, 2015
6TTF	PKM2 in complex with Compound 5 Descriptor: 1,6-di-O-phosphono-beta-D-fructofuranose, 5-hydroxynaphthalene-1-sulfonamide, Pyruvate kinase PKM Authors: Saur, M, Hartshorn, M.J, Dong, J, Reeks, J, Bunkoczi, G, Jhoti, H, Williams, P.A. Deposit date: 2019-12-27 Release date: 2020-01-15 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Fragment-based drug discovery using cryo-EM. Drug Discov Today, 25, 2020
6TTI	PKM2 in complex with Compound 6 Descriptor: 1,6-di-O-phosphono-beta-D-fructofuranose, DIMETHYL SULFOXIDE, Pyruvate kinase PKM, ... Authors: Saur, M, Hartshorn, M.J, Dong, J, Reeks, J, Bunkoczi, G, Jhoti, H, Williams, P.A. Deposit date: 2019-12-27 Release date: 2020-01-15 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (2.5 Å) Cite: Fragment-based drug discovery using cryo-EM. Drug Discov Today, 25, 2020
6TSH	Beta-galactosidase in complex with deoxygalacto-nojirimycin Descriptor: (2R,3S,4R,5S)-2-(hydroxymethyl)piperidine-3,4,5-triol, Beta-galactosidase, MAGNESIUM ION Authors: Saur, M, Hartshorn, M.J, Dong, J, Reeks, J, Bunkoczi, G, Jhoti, H, Williams, P.A. Deposit date: 2019-12-20 Release date: 2020-01-08 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (2.3 Å) Cite: Fragment-based drug discovery using cryo-EM. Drug Discov Today, 25, 2020
6TTH	PKM2 in complex with L-threonine Descriptor: 1,6-di-O-phosphono-beta-D-fructofuranose, Pyruvate kinase PKM, THREONINE Authors: Saur, M, Hartshorn, M.J, Dong, J, Reeks, J, Bunkoczi, G, Jhoti, H, Williams, P.A. Deposit date: 2019-12-27 Release date: 2020-01-15 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (2.6 Å) Cite: Fragment-based drug discovery using cryo-EM. Drug Discov Today, 25, 2020
6TTQ	PKM2 in complex with Compound 10 Descriptor: 1,6-di-O-phosphono-beta-D-fructofuranose, 1-propan-2-yl-3-pyridin-4-yl-urea, Pyruvate kinase PKM Authors: Saur, M, Hartshorn, M.J, Dong, J, Reeks, J, Bunkoczi, G, Jhoti, H, Williams, P.A. Deposit date: 2019-12-30 Release date: 2020-01-15 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: Fragment-based drug discovery using cryo-EM. Drug Discov Today, 25, 2020
6NO5	ADP bound to K46bE&K114bD mutant ATP-grasp fold of Blastocystis hominis succinyl-CoA synthetase Descriptor: ADENOSINE-5'-DIPHOSPHATE, AMMONIUM ION, MAGNESIUM ION, ... Authors: Huang, J, Fraser, M.E. Deposit date: 2019-01-15 Release date: 2019-07-17 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.069 Å) Cite: ATP-specificity of succinyl-CoA synthetase from Blastocystis hominis. Acta Crystallogr D Struct Biol, 75, 2019
6NO2	ADP bound to K114bD mutant ATP-grasp fold of Blastocystis hominis succinyl-CoA synthetase Descriptor: ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, MAGNESIUM ION, ... Authors: Huang, J, Fraser, M.E. Deposit date: 2019-01-15 Release date: 2019-07-17 Last modified: 2020-01-08 Method: X-RAY DIFFRACTION (2.159 Å) Cite: ATP-specificity of succinyl-CoA synthetase from Blastocystis hominis. Acta Crystallogr D Struct Biol, 75, 2019

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