Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4AEA
DownloadVisualize
BU of 4aea by Molmil
Dimeric alpha-cobratoxin X-ray structure: Localization of intermolecular disulfides and possible mode of binding to nicotinic acetylcholine receptors
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, GLYCINE, LONG NEUROTOXIN 1
Authors:Rucktooa, P, Osipov, A.V, Kasheverov, I.E, Filkin, S.Y, Starkov, V.G, Andreeva, T.V, Bertrand, D, Utkin, Y.N, Tsetlin, V.I, Sixma, T.K.
Deposit date:2012-01-09
Release date:2012-01-25
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Dimeric Alpha-Cobratoxin X-Ray Structure: Localization of Intermolecular Disulfides and Possible Mode of Binding to Nicotinic Acetylcholine Receptors.
J.Biol.Chem., 287, 2012
6T1K
DownloadVisualize
BU of 6t1k by Molmil
Streptavidin variants harbouring an artificial organocatalyst based cofactor
Descriptor: 1,2-ETHANEDIOL, 5-[(3~{a}~{S},4~{S},6~{a}~{R})-2-oxidanylidene-1,3,3~{a},4,6,6~{a}-hexahydrothieno[3,4-d]imidazol-4-yl]-~{N}-(1-pyridin-4-ylpiperidin-4-yl)pentanamide, Streptavidin
Authors:Lechner, H, Hocker, B.
Deposit date:2019-10-04
Release date:2020-10-14
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:An Artificial Cofactor Catalyzing the Baylis-Hillman Reaction with Designed Streptavidin as Protein Host*.
Chembiochem, 22, 2021
3CWU
DownloadVisualize
BU of 3cwu by Molmil
Crystal Structure of an AlkA Host/Guest Complex 2'-fluoro-2'-deoxy-1,N6-ethenoadenine:Thymine Base Pair
Descriptor: DNA (5'-D(*DGP*DAP*DCP*DAP*DTP*DGP*DAP*(2FE)P*DTP*DGP*DCP*DC)-3'), DNA (5'-D(*DGP*DGP*DCP*DAP*DTP*DTP*DCP*DAP*DTP*DGP*DTP*DC)-3'), DNA-3-methyladenine glycosylase 2
Authors:Bowman, B.R, Lee, S, Wang, S, Verdine, G.L.
Deposit date:2008-04-22
Release date:2008-09-02
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of the E. coli DNA Glycosylase AlkA Bound to the Ends of Duplex DNA: A System for the Structure Determination of Lesion-Containing DNA.
Structure, 16, 2008
3CXY
DownloadVisualize
BU of 3cxy by Molmil
Crystal structure of the cytochrome P450 CYP121 P346L mutant from M. tuberculosis
Descriptor: Cytochrome P450 121, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION
Authors:Leys, D.
Deposit date:2008-04-25
Release date:2008-09-23
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Characterization of active site structure in CYP121
TO BE PUBLISHED
3D3Z
DownloadVisualize
BU of 3d3z by Molmil
Crystal structure of Actibind a T2 RNase
Descriptor: 1,2-ETHANEDIOL, 1-(5-deoxy-beta-L-xylofuranosyl)pyrimidine-2,4(1H,3H)-dione, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Gonzalez, A, Almog, O.
Deposit date:2008-05-13
Release date:2009-06-02
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structue of Actibind a T2 RNase
To be Published
2N9T
DownloadVisualize
BU of 2n9t by Molmil
NMR solution structure of ProTx-II
Descriptor: Beta/omega-theraphotoxin-Tp2a
Authors:Schroeder, C.I.
Deposit date:2015-12-08
Release date:2016-07-06
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Interaction of Tarantula Venom Peptide ProTx-II with Lipid Membranes Is a Prerequisite for Its Inhibition of Human Voltage-gated Sodium Channel NaV1.7.
J.Biol.Chem., 291, 2016
6T6V
DownloadVisualize
BU of 6t6v by Molmil
Glu-494-Ala inactive monomer of a quinol dependent Nitric Oxide Reductase (qNOR) from Alcaligenes xylosoxidans
Descriptor: CALCIUM ION, Nitric oxide reductase subunit B, PROTOPORPHYRIN IX CONTAINING FE
Authors:Gopalasingam, C.C, Johnson, R.M, Antonyuk, S.V, Muench, S.P, Hasnain, S.S.
Deposit date:2019-10-19
Release date:2020-04-01
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:The active form of quinol-dependent nitric oxide reductase fromNeisseria meningitidisis a dimer.
Iucrj, 7, 2020
3D17
DownloadVisualize
BU of 3d17 by Molmil
A triply ligated crystal structure of relaxed state human hemoglobin
Descriptor: CARBON MONOXIDE, Hemoglobin subunit alpha, Hemoglobin subunit beta, ...
Authors:Safo, M.K, Musayev, F.N, Jenkins, J, Abraham, D.J.
Deposit date:2008-05-05
Release date:2008-06-03
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:A triply ligated crystal structure of relaxed state human hemoglobin
TO BE PUBLISHED
3D7O
DownloadVisualize
BU of 3d7o by Molmil
Human hemoglobin, nitrogen dioxide anion modified
Descriptor: Hemoglobin subunit alpha, Hemoglobin subunit beta, NITRITE ION, ...
Authors:Yi, J, Safo, M.K, Richter-Addo, G.B.
Deposit date:2008-05-21
Release date:2009-05-05
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The nitrite anion binds to human hemoglobin via the uncommon O-nitrito mode.
Biochemistry, 47, 2008
3D7V
DownloadVisualize
BU of 3d7v by Molmil
Crystal structure of Mcl-1 in complex with an Mcl-1 selective BH3 ligand
Descriptor: Bcl-2-like protein 11, Induced myeloid leukemia cell differentiation protein Mcl-1, ZINC ION
Authors:Lee, E.F, Czabotar, P.E, Colman, P.M, Fairlie, W.D.
Deposit date:2008-05-22
Release date:2008-06-24
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:A novel BH3 ligand that selectively targets Mcl-1 reveals that apoptosis can proceed without Mcl-1 degradation.
J.Cell Biol., 180, 2008
6MX7
DownloadVisualize
BU of 6mx7 by Molmil
CryoEM structure of chimeric Eastern Equine Encephalitis Virus: Genome-Binding Capsid N-terminal Domain
Descriptor: Capsid
Authors:Hasan, S.S, Sun, C, Kim, A.S, Watanabe, Y, Chen, C.L, Klose, T, Buda, G, Crispin, M, Diamond, M.S, Klimstra, W.B, Rossmann, M.G.
Deposit date:2018-10-30
Release date:2018-12-19
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (4.8 Å)
Cite:Cryo-EM Structures of Eastern Equine Encephalitis Virus Reveal Mechanisms of Virus Disassembly and Antibody Neutralization.
Cell Rep, 25, 2018
3CH9
DownloadVisualize
BU of 3ch9 by Molmil
Crystal structure of Aspergillus fumigatus chitinase B1 in complex with dimethylguanylurea
Descriptor: 1-methyl-3-(N-methylcarbamimidoyl)urea, Chitinase, SULFATE ION
Authors:Andersen, O.A, van Aalten, D.M.F.
Deposit date:2008-03-09
Release date:2008-03-25
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure-based dissection of the natural product cyclopentapeptide chitinase inhibitor argifin.
Chem.Biol., 15, 2008
2N4T
DownloadVisualize
BU of 2n4t by Molmil
NMR structure of Fbp28 WW domain L453W mutant
Descriptor: Transcription elongation regulator 1
Authors:Medina, J, Macias, M, Martin-Malpartida, P, Scheraga, H.A.
Deposit date:2015-07-01
Release date:2015-10-21
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Preventing fibril formation of a protein by selective mutation.
Proc.Natl.Acad.Sci.USA, 112, 2015
3CHO
DownloadVisualize
BU of 3cho by Molmil
Crystal structure of leukotriene a4 hydrolase in complex with 2-amino-N-[4-(phenylmethoxy)phenyl]-acetamide
Descriptor: ACETATE ION, Leukotriene A-4 hydrolase, N-[4-(benzyloxy)phenyl]glycinamide, ...
Authors:Thunnissen, M.M.G.M, Adler, M, Whitlow, M.
Deposit date:2008-03-10
Release date:2008-04-22
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Synthesis of glutamic acid analogs as potent inhibitors of leukotriene A4 hydrolase.
Bioorg.Med.Chem., 16, 2008
6MZZ
DownloadVisualize
BU of 6mzz by Molmil
Fluoroacetate dehalogenase, room temperature structure, using first 1 degree of total 3 degree oscillation
Descriptor: CALCIUM ION, Fluoroacetate dehalogenase
Authors:Finke, A.D, Wierman, J.L, Pare-Labrosse, O, Sarrachini, A, Besaw, J, Mehrabi, P, Gruner, S.M, Miller, R.J.D.
Deposit date:2018-11-06
Release date:2019-03-27
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Fixed-target serial oscillation crystallography at room temperature.
IUCrJ, 6, 2019
3CKB
DownloadVisualize
BU of 3ckb by Molmil
B. thetaiotaomicron SusD with maltotriose
Descriptor: CALCIUM ION, SusD, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Koropatkin, N.M, Martens, E.C, Gordon, J.I, Smith, T.J.
Deposit date:2008-03-14
Release date:2008-04-01
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Starch catabolism by a prominent human gut symbiont is directed by the recognition of amylose helices.
Structure, 16, 2008
4A0H
DownloadVisualize
BU of 4a0h by Molmil
Structure of bifunctional DAPA aminotransferase-DTB synthetase from Arabidopsis thaliana bound to 7-keto 8-amino pelargonic acid (KAPA)
Descriptor: 7-KETO-8-AMINOPELARGONIC ACID, ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE, L(+)-TARTARIC ACID, ...
Authors:Cobessi, D, Dumas, R, Pautre, V, Meinguet, C, Ferrer, J.L, Alban, C.
Deposit date:2011-09-09
Release date:2012-06-13
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.808 Å)
Cite:Biochemical and Structural Characterization of the Arabidopsis Bifunctional Enzyme Dethiobiotin Synthetase-Diaminopelargonic Acid Aminotransferase: Evidence for Substrate Channeling in Biotin Synthesis.
Plant Cell, 24, 2012
2MYS
DownloadVisualize
BU of 2mys by Molmil
MYOSIN SUBFRAGMENT-1, ALPHA CARBON COORDINATES ONLY FOR THE TWO LIGHT CHAINS
Descriptor: MAGNESIUM ION, MYOSIN, SULFATE ION
Authors:Rayment, I, Holden, H.M.
Deposit date:1996-06-27
Release date:1997-01-11
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Three-dimensional structure of myosin subfragment-1: a molecular motor.
Science, 261, 1993
6T9S
DownloadVisualize
BU of 6t9s by Molmil
Human Butyrylcholinesterase in complex with 2-(N-hydroxyimino)-N-[(1S)-3-{4-[(2-methyl-1H-imidazol-1-yl)methyl]-1H-1,2,3-triazol-1-yl}-1- phenylpropyl]acetamide
Descriptor: (2~{E})-2-hydroxyimino-~{N}-[(1~{S})-3-[4-[(2-methylimidazol-1-yl)methyl]-1,2,3-triazol-1-yl]-1-phenyl-propyl]ethanamid e, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(5-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Brazzolotto, X, Sinko, G, Marakovic, N, Knezevic, A.
Deposit date:2019-10-28
Release date:2020-07-15
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Enantioseparation, in vitro testing, and structural characterization of triple-binding reactivators of organophosphate-inhibited cholinesterases.
Biochem.J., 477, 2020
2OBI
DownloadVisualize
BU of 2obi by Molmil
Crystal structure of the Selenocysteine to Cysteine Mutant of human phospholipid hydroperoxide glutathione peroxidase (GPx4)
Descriptor: Phospholipid hydroperoxide glutathione peroxidase (GPX4)
Authors:Scheerer, P, Krauss, N, Hoehne, W.
Deposit date:2006-12-19
Release date:2007-09-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structural basis for catalytic activity and enzyme polymerization of phospholipid hydroperoxide glutathione peroxidase-4 (GPx4).
Biochemistry, 46, 2007
6N4E
DownloadVisualize
BU of 6n4e by Molmil
hPGDS complexed with a quinoline-3-carboxamide
Descriptor: 7-(difluoromethoxy)-N-[trans-4-(2-hydroxypropan-2-yl)cyclohexyl]quinoline-3-carboxamide, GLUTATHIONE, Hematopoietic prostaglandin D synthase
Authors:Shewchuk, L.M, Ward, P.
Deposit date:2018-11-19
Release date:2019-03-27
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:The discovery of quinoline-3-carboxamides as hematopoietic prostaglandin D synthase (H-PGDS) inhibitors.
Bioorg. Med. Chem., 27, 2019
3CY1
DownloadVisualize
BU of 3cy1 by Molmil
Crystal structure of the cytochrome P450 CYP121 S279A mutant from M. tuberculosis
Descriptor: Cytochrome P450 121, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION
Authors:Leys, D.
Deposit date:2008-04-25
Release date:2008-09-23
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Characterisation of active site of cytochrome P450 CYP121
TO BE PUBLISHED
6N4Q
DownloadVisualize
BU of 6n4q by Molmil
CryoEM structure of Nav1.7 VSD2 (actived state) in complex with the gating modifier toxin ProTx2
Descriptor: Beta/omega-theraphotoxin-Tp2a, Fab heavy chain, Fab light chain, ...
Authors:Xu, H, Rohou, A, Arthur, C.P, Estevez, A, Ciferri, C, Payandeh, J, Koth, C.M.
Deposit date:2018-11-20
Release date:2019-01-23
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural Basis of Nav1.7 Inhibition by a Gating-Modifier Spider Toxin.
Cell, 176, 2019
3CZ7
DownloadVisualize
BU of 3cz7 by Molmil
Molecular Basis for the Autoregulation of the Protein Acetyl Transferase Rtt109
Descriptor: ACETYL COENZYME *A, Regulator of Ty1 transposition protein 109
Authors:Hoelz, A, Stavropoulos, P.
Deposit date:2008-04-28
Release date:2008-09-09
Last modified:2017-08-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:Molecular basis for the autoregulation of the protein acetyl transferase Rtt109
Proc.Natl.Acad.Sci.Usa, 105, 2008
2NSL
DownloadVisualize
BU of 2nsl by Molmil
E. coli PurE H45N mutant complexed with CAIR
Descriptor: 5-AMINO-1-(5-O-PHOSPHONO-BETA-D-RIBOFURANOSYL)-1H-IMIDAZOLE-4-CARBOXYLIC ACID, Phosphoribosylaminoimidazole carboxylase catalytic subunit
Authors:Ealick, S.E, Morar, M.
Deposit date:2006-11-04
Release date:2007-04-24
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:N(5)-CAIR Mutase: Role of a CO(2) Binding Site and Substrate Movement in Catalysis.
Biochemistry, 46, 2007

225946

PDB entries from 2024-10-09

PDB statisticsPDBj update infoContact PDBjnumon