PDB: 45953 resultsInfo pagesStatus searchChemie searchBIRD

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2M14	NMR structure of the complex between the PH domain of the Tfb1 subunit from TFIIH and Rad4 Descriptor: DNA repair protein RAD4, RNA polymerase II transcription factor B subunit 1 Authors: Lafrance-Vanasse, J, Arseneault, G, Cappadocia, L, Legault, P, Omichinski, J.G. Deposit date: 2012-11-16 Release date: 2013-01-23 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structural and functional evidence that Rad4 competes with Rad2 for binding to the Tfb1 subunit of TFIIH in NER. Nucleic Acids Res., 41, 2013
4YS3	Nucleosome disassembly by RSC and SWI/SNF is enhanced by H3 acetylation near the nucleosome dyad axis Descriptor: DNA (147-MER), Histone H2A, Histone H2B 1.1, ... Authors: Dechassa, M.L, Luger, K, Chatterjee, N, North, J.A, Manohar, M, Prasad, R, Ottessen, J.J, Poirier, M.G, Bartholomew, B. Deposit date: 2015-03-16 Release date: 2015-10-14 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (3 Å) Cite: Histone Acetylation near the Nucleosome Dyad Axis Enhances Nucleosome Disassembly by RSC and SWI/SNF. Mol.Cell.Biol., 35, 2015
2ZQE	Crystal structure of the Smr domain of Thermus thermophilus MutS2 Descriptor: MutS2 protein Authors: Fukui, K, Kitamura, Y, Nakagawa, N, Masui, R, Kuramitsu, S. Deposit date: 2008-08-08 Release date: 2008-09-30 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Crystal structure of MutS2 endonuclease domain and the mechanism of homologous recombination suppression J.Biol.Chem., 283, 2008
8PP7	human RYBP-PRC1 bound to mononucleosome Descriptor: DNA (215-mer), E3 ubiquitin-protein ligase RING2, Histone H2A, ... Authors: Ciapponi, M, Benda, C, Mueller, J. Deposit date: 2023-07-06 Release date: 2024-03-27 Last modified: 2024-07-31 Method: ELECTRON MICROSCOPY (2.91 Å) Cite: Structural basis of the histone ubiquitination read-write mechanism of RYBP-PRC1. Nat.Struct.Mol.Biol., 31, 2024
6NEO	Crystal structure of PprA filament from Deinococcus radiodurans Descriptor: DNA repair protein PprA Authors: Szabla, R, Junop, M.S, Rok, M. Deposit date: 2018-12-18 Release date: 2019-02-20 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (5.94 Å) Cite: Crystal structure of PprA filament from Deinococcus radiodurans To Be Published
4Z66	Nucleosome disassembly by RSC and SWI/SNF is enhanced by H3 acetylation near the nucleosome dyad axis Descriptor: DNA (147-MER), Histone H2A, Histone H2B 1.1, ... Authors: Dechassa, M.L, Luger, K, Chatterjee, N, North, J.A, Manohar, M, Prasad, R, Ottessen, J.J, Poirier, M.G, Bartholomew, B. Deposit date: 2015-04-03 Release date: 2015-10-14 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Histone Acetylation near the Nucleosome Dyad Axis Enhances Nucleosome Disassembly by RSC and SWI/SNF. Mol.Cell.Biol., 35, 2015
6RWL	SIVrcm intasome Descriptor: DNA (5'-D(*AP*AP*CP*TP*GP*GP*TP*AP*GP*AP*GP*AP*TP*TP*TP*TP*TP*CP*TP*TP*AP*GP*C)-3'), DNA (5'-D(P*GP*CP*TP*AP*AP*GP*AP*AP*AP*AP*AP*TP*CP*TP*CP*TP*AP*CP*CP*A)-3'), Pol protein, ... Authors: Cherepanov, P, Nans, A, Cook, N. Deposit date: 2019-06-05 Release date: 2020-02-05 Last modified: 2024-07-10 Method: ELECTRON MICROSCOPY (3.36 Å) Cite: Structural basis of second-generation HIV integrase inhibitor action and viral resistance. Science, 367, 2020
1AM9	HUMAN SREBP-1A BOUND TO LDL RECEPTOR PROMOTER Descriptor: DNA (5'-D(*CP*AP*TP*GP*AP*GP*AP*TP*CP*AP*CP*CP*CP*CP*AP*CP*T P*GP*CP*AP*A)-3'), DNA (5'-D(*TP*TP*GP*CP*AP*GP*TP*GP*GP*GP*GP*TP*GP*AP*TP*CP*T )-3'), MAGNESIUM ION, ... Authors: Parraga, A, Burley, S.K. Deposit date: 1997-06-25 Release date: 1998-07-10 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Co-crystal structure of sterol regulatory element binding protein 1a at 2.3 A resolution. Structure, 6, 1998
1HHT	RNA dependent RNA polymerase from dsRNA bacteriophage phi6 plus template Descriptor: DNA (5'-(*TP*TP*TP*CP*C)-3'), MANGANESE (II) ION, P2 PROTEIN Authors: Grimes, J.M, Butcher, S.J, Makeyev, E.V, Bamford, D.H, Stuart, D.I. Deposit date: 2000-12-28 Release date: 2001-03-27 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.9 Å) Cite: A Mechanism for Initiating RNA-Dependent RNA Polymerization Nature, 410, 2001
8T9C	Zophobas morio black wasting virus strain UT-morio virion structure Descriptor: DNA (5'-D(P*CP*AP*GP*GP*CP*CP*AP*A)-3'), DNA (5'-D(P*CP*G)-3'), DNA (5'-D(P*CP*GP*A)-3'), ... Authors: Penzes, J.J, Kaelber, J.T. Deposit date: 2023-06-23 Release date: 2023-08-23 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: Sequencing-free discovery by cryo-EM of a pathogenic parvovirus causing mass mortality of farmed beetles To Be Published
8TJE	Zophobas morio black wasting virus strain OR-molitor virion structure Descriptor: DNA (5'-D(P*CP*AP*GP*GP*CP*CP*AP*AP*A)-3'), DNA (5'-D(P*CP*G)-3'), DNA (5'-D(P*TP*CP*GP*AP*A)-3'), ... Authors: Penzes, J.J, Kaelber, J.T. Deposit date: 2023-07-20 Release date: 2023-08-23 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Sequencing-free discovery by cryo-EM of a pathogenic parvovirus causing mass mortality of farmed beetles To Be Published
5XM0	The mouse nucleosome structure containing H2A, H2B type3-A, H3.3, and H4 Descriptor: DNA (146-MER), Histone H2A type 1-B, Histone H2B type 3-A, ... Authors: Taguchi, H, Horikoshi, N, Kurumizaka, H. Deposit date: 2017-05-12 Release date: 2018-03-07 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.874 Å) Cite: Histone H3.3 sub-variant H3mm7 is required for normal skeletal muscle regeneration. Nat Commun, 9, 2018
8EUJ	Class2 of the INO80-Nucleosome complex Descriptor: DNA (147-MER), Histone H2A type 1, Histone H2B 1.1, ... Authors: Wu, H, Munoz, E, Gourdet, M, Narlikar, G, Cheng, Y.F. Deposit date: 2022-10-18 Release date: 2023-07-12 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (3.36 Å) Cite: Reorientation of INO80 on hexasomes reveals basis for mechanistic versatility. Science, 381, 2023
8EUE	Class1 of the INO80-Nucleosome complex Descriptor: DNA (147-MER), Histone H2A type 1, Histone H2B 1.1, ... Authors: Wu, H, Munoz, E, Gourdet, M, Narlikar, G, Cheng, Y.F. Deposit date: 2022-10-18 Release date: 2023-07-12 Last modified: 2024-04-03 Method: ELECTRON MICROSCOPY (3.48 Å) Cite: Reorientation of INO80 on hexasomes reveals basis for mechanistic versatility. Science, 381, 2023
8T9X	Zophobas morio black wasting virus strain NJ2-molitor virion structure Descriptor: DNA (5'-D(P*CP*AP*GP*GP*CP*CP*AP*AP*A)-3'), DNA (5'-D(P*CP*GP*A)-3'), DNA (5'-D(P*TP*CP*GP*AP*A)-3'), ... Authors: Penzes, J.J, Kaelber, J.T. Deposit date: 2023-06-26 Release date: 2024-02-21 Last modified: 2024-05-08 Method: ELECTRON MICROSCOPY (2 Å) Cite: Sequencing-free discovery by cryo-EM of a pathogenic parvovirus causing mass mortality of farmed beetles To Be Published
5XM1	The mouse nucleosome structure containing H2A, H2B type3-A, H3mm7, and H4 Descriptor: DNA (146-MER), Histone H2A type 1-B, Histone H2B type 3-A, ... Authors: Taguchi, H, Horikoshi, N, Kurumizaka, H. Deposit date: 2017-05-12 Release date: 2018-03-07 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (3.45 Å) Cite: Histone H3.3 sub-variant H3mm7 is required for normal skeletal muscle regeneration. Nat Commun, 9, 2018
7EG6	Snf5 Finger Helix bound to the nucleosome Descriptor: DNA (235-MER), Histone H2A type 1, Histone H2B 1.1, ... Authors: Chen, Z.C, Chen, K.J, He, Z.Y, Ye, Y.P. Deposit date: 2021-03-24 Release date: 2022-01-12 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structure of the SWI/SNF complex bound to the nucleosome and insights into the functional modularity. Cell Discov, 7, 2021
3TBI	Crystal structure of T4 gp33 bound to E. coli RNAP beta-flap domain Descriptor: DNA-directed RNA polymerase subunit beta, RNA polymerase-associated protein Gp33 Authors: Twist, K.A.F, Campbell, E.A, Darst, S.A. Deposit date: 2011-08-06 Release date: 2011-11-23 Method: X-RAY DIFFRACTION (3 Å) Cite: Crystal structure of T4 gp33 bound to E. coli RNAP beta-flap domain To be Published
8HD5	The crystal structure of Hu protein in Staphylococcus aureus Descriptor: DNA-binding protein HU Authors: Liu, Y.H, Chen, H, Li, Y, Liu, B. Deposit date: 2022-11-03 Release date: 2023-12-06 Method: X-RAY DIFFRACTION (2.14 Å) Cite: The crystal structure of Hu protein in Staphylococcus aureus To Be Published
8U17	The ternary complex structure of DDB1-CRBN-SALL4(ZF1,2)-long bound to Pomalidomide Descriptor: DNA damage-binding protein 1, Protein cereblon, S-Pomalidomide, ... Authors: Clifton, M.C, Ma, X, Ornelas, E. Deposit date: 2023-08-30 Release date: 2023-12-27 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Structural and biophysical comparisons of the pomalidomide- and CC-220-induced interactions of SALL4 with cereblon. Sci Rep, 13, 2023
4JXT	CID of human RPRD1A in complex with a phosphorylated peptide from RPB1-CTD Descriptor: DNA-directed RNA polymerase II subunit RPB1, Regulation of nuclear pre-mRNA domain-containing protein 1A, UNKNOWN ATOM OR ION Authors: Ni, Z, Xu, C, Tempel, W, El Bakkouri, M, Loppnau, P, Guo, X, Bountra, C, Weigelt, J, Arrowsmith, C.H, Edwards, A.M, Min, J, Greenblatt, J.F, Structural Genomics Consortium (SGC) Deposit date: 2013-03-28 Release date: 2013-11-13 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.9 Å) Cite: RPRD1A and RPRD1B are human RNA polymerase II C-terminal domain scaffolds for Ser5 dephosphorylation. Nat.Struct.Mol.Biol., 21, 2014
7LCD	Crystal structure of human polymerase eta complexed with syn N7-acetophenoneguanine Descriptor: DNA (5'-D(*AP*GP*TP*GP*TP*GP*AP*G)-3'), DNA (5'-D(*CP*AP*T*(T0P)P*CP*TP*CP*AP*CP*AP*CP*T)-3'), DNA polymerase eta Authors: Jung, H, Lee, S. Deposit date: 2021-01-10 Release date: 2022-02-09 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.98 Å) Cite: Crystal structure of human polymerase eta complexed with syn N7-acetophenoneguanine To Be Published
1G60	Crystal Structure of Methyltransferase MboIIa (Moraxella bovis) Descriptor: Adenine-specific Methyltransferase MboIIA, S-ADENOSYLMETHIONINE, SODIUM ION Authors: Osipiuk, J, Walsh, M.A, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) Deposit date: 2000-11-02 Release date: 2002-05-01 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.74 Å) Cite: Crystal structure of MboIIA methyltransferase. Nucleic Acids Res., 31, 2003
3PWT	Crystal structure of mutant E.coli topoisomerase IA Descriptor: DNA topoisomerase, SULFATE ION Authors: Zhang, Z, Bokun, C, Tse-Dinh, Y.-C. Deposit date: 2010-12-08 Release date: 2010-12-29 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Crystal structure of mutant E.coli topoisomerase IA To be Published
7Z42	Influenza B polymerase with Pol II pSer5 CTD peptide mimic bound in site 2B Descriptor: DNA-directed RNA polymerase II subunit RPB1, Polymerase acidic protein, Polymerase basic protein 2, ... Authors: Cusack, S, Drncova, P. Deposit date: 2022-03-03 Release date: 2022-05-18 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.418 Å) Cite: Type B and type A influenza polymerases have evolved distinct binding interfaces to recruit the RNA polymerase II CTD. Plos Pathog., 18, 2022

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