PDB: 54296 resultsInfo pagesStatus searchChemie searchBIRD

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6GMH	Structure of activated transcription complex Pol II-DSIF-PAF-SPT6 Descriptor: CDC73, CTR9,RNA polymerase-associated protein CTR9 homolog,RNA polymerase-associated protein CTR9 homolog, DNA-directed RNA polymerase II subunit RPB9, ... Authors: Vos, S.M, Farnung, L, Boehing, M, Linden, A, Wigge, C, Urlaub, H, Cramer, P. Deposit date: 2018-05-26 Release date: 2018-08-22 Last modified: 2019-12-18 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structure of activated transcription complex Pol II-DSIF-PAF-SPT6. Nature, 560, 2018
6W77	30S-Inactivated-high-Mg2+ Class A Descriptor: 30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, ... Authors: Jahagirdar, D, Jha, V, Basu, B, Gomez-Blanco, J, Vargas, J, Ortega, J. Deposit date: 2020-03-18 Release date: 2020-10-21 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Alternative conformations and motions adopted by 30S ribosomal subunits visualized by cryo-electron microscopy. Rna, 26, 2020
5FBC	S1 nuclease from Aspergillus oryzae in complex with 2'-deoxyadenosine-5'-thio-monophosphate (5'dAMP(S)). Descriptor: 2-DEOXY-ADENOSINE -5'-THIO-MONOPHOSPHATE, 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, ... Authors: Koval, T, Oestergaard, L.H, Dohnalek, J. Deposit date: 2015-12-14 Release date: 2016-12-28 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Structural and Catalytic Properties of S1 Nuclease from Aspergillus oryzae Responsible for Substrate Recognition, Cleavage, Non-Specificity, and Inhibition. PLoS ONE, 11, 2016
5F9L	CRYSTAL STRUCTURE OF HUMAN DNA POLYMERASE ETA INSERTING dAMPNPP ACROSS A DNA TEMPLATE CONTAINING 1,N2-ETHENODEOXYGUANOSINE LESION Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), DNA (5'-D(*CP*AP*TP*(GNE)P*AP*TP*GP*AP*CP*GP*CP*T)-3'), ... Authors: Patra, A, Egli, M. Deposit date: 2015-12-09 Release date: 2016-12-21 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.592 Å) Cite: Bypass of the 1, N2-Ethenodeoxyguanosine Lesion by Human DNA Polymerase Eta To Be Published
7XFG	NMR solution structures of p300 TAZ2 domain in complex with BRD4-NUT F1c domain binding motif #1 Descriptor: Histone acetyltransferase p300, NUT family member 1, ZINC ION Authors: Yu, D, Zeng, L, Zhou, M.-M. Deposit date: 2022-04-01 Release date: 2023-04-12 Last modified: 2024-10-30 Method: SOLUTION NMR Cite: Structural mechanism of BRD4-NUT and p300 bipartite interaction in propagating aberrant gene transcription in chromatin in NUT carcinoma. Nat Commun, 14, 2023
6W7M	30S-Inactive-high-Mg2+ + carbon layer Descriptor: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... Authors: Jahagirdar, D, Jha, V, Basu, B, Gomez-Blanco, J, Vargas, J, Ortega, J. Deposit date: 2020-03-19 Release date: 2020-10-21 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Alternative conformations and motions adopted by 30S ribosomal subunits visualized by cryo-electron microscopy. Rna, 26, 2020
8VGL	CryoEM structure of Nav1.7 in complex with wild type Fab 7A9 Descriptor: Chimeric Nav1.7-NavAb, Fab 7A9 heavy chain, Fab 7A9 light chain Authors: Kung, J.E, Jao, C.C, Arthur, C.P, Sudhamsu, J. Deposit date: 2023-12-27 Release date: 2024-10-30 Method: ELECTRON MICROSCOPY (2.6 Å) Cite: Disulfi de constrained Fabs overcome target size limitation for high-resolution single-particle cryo-EM. Biorxiv, 2024
6VOF	Chloroplast ATP synthase (O2, CF1FO) Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase delta chain, ... Authors: Yang, J.-H, Williams, D, Kandiah, E, Fromme, P, Chiu, P.-L. Deposit date: 2020-01-30 Release date: 2020-09-09 Last modified: 2024-10-30 Method: ELECTRON MICROSCOPY (4.51 Å) Cite: Structural basis of redox modulation on chloroplast ATP synthase. Commun Biol, 3, 2020
6GY6	XaxAB pore complex from Xenorhabdus nematophila Descriptor: XaxA, XaxB Authors: Schubert, E, Raunser, S. Deposit date: 2018-06-28 Release date: 2018-07-25 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (4 Å) Cite: Membrane insertion of alpha-xenorhabdolysin in near-atomic detail. Elife, 7, 2018
6W7W	30S-Inactive-low-Mg2+ Class B Descriptor: 16S rRNA, 30S ribosomal protein S12, 30S ribosomal protein S15, ... Authors: Jahagirdar, D, Jha, V, Basu, B, Gomez-Blanco, J, Vargas, J, Ortega, J. Deposit date: 2020-03-19 Release date: 2020-10-21 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Alternative conformations and motions adopted by 30S ribosomal subunits visualized by cryo-electron microscopy. Rna, 26, 2020
6VM4	Chloroplast ATP synthase (C2, CF1FO) Descriptor: ATP synthase delta chain, chloroplastic, ATP synthase epsilon chain, ... Authors: Yang, J.-H, Williams, D, Kandiah, E, Fromme, P, Chiu, P.-L. Deposit date: 2020-01-27 Release date: 2020-09-09 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (7.08 Å) Cite: Structural basis of redox modulation on chloroplast ATP synthase. Commun Biol, 3, 2020
6VON	Chloroplast ATP synthase (R1, CF1FO) Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase delta chain, ... Authors: Yang, J.-H, Williams, D, Kandiah, E, Fromme, P, Chiu, P.-L. Deposit date: 2020-01-30 Release date: 2020-09-09 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.35 Å) Cite: Structural basis of redox modulation on chloroplast ATP synthase. Commun Biol, 3, 2020
3M6M	Crystal structure of RpfF complexed with REC domain of RpfC Descriptor: 1,2-ETHANEDIOL, IODIDE ION, MAGNESIUM ION, ... Authors: Cheng, Z, Lim, S.C, Qamra, R, Song, H. Deposit date: 2010-03-16 Release date: 2010-09-22 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural Basis of the Sensor-Synthase Interaction in Autoinduction of the Quorum Sensing Signal DSF Biosynthesis Structure, 18, 2010
5XUJ	Crystal structure of PDE10A in complex with 7-(4-chlorophenyl)-2-methylpyrazolo[1,5-a]pyrimidine Descriptor: 7-(4-chlorophenyl)-2-methyl-pyrazolo[1,5-a]pyrimidine, MAGNESIUM ION, ZINC ION, ... Authors: Amano, Y, Honbou, K. Deposit date: 2017-06-23 Release date: 2018-03-14 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (2.44 Å) Cite: Fragment-Based Discovery of Pyrimido[1,2-b]indazole PDE10A Inhibitors. Chem. Pharm. Bull., 66, 2018
6VOL	Chloroplast ATP synthase (R2, CF1FO) Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase delta chain, ... Authors: Yang, J.-H, Williams, D, Kandiah, E, Fromme, P, Chiu, P.-L. Deposit date: 2020-01-30 Release date: 2020-09-09 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (4.06 Å) Cite: Structural basis of redox modulation on chloroplast ATP synthase. Commun Biol, 3, 2020
6VOH	Chloroplast ATP synthase (O1, CF1FO) Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase delta chain, ... Authors: Yang, J.-H, Williams, D, Kandiah, E, Fromme, P, Chiu, P.-L. Deposit date: 2020-01-30 Release date: 2020-09-09 Last modified: 2020-09-16 Method: ELECTRON MICROSCOPY (4.16 Å) Cite: Structural basis of redox modulation on chloroplast ATP synthase. Commun Biol, 3, 2020
6M6A	Cryo-EM structure of Thermus thermophilus Mfd in complex with RNA polymerase Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Shi, J, Wen, A, Feng, Y. Deposit date: 2020-03-14 Release date: 2020-10-14 Last modified: 2024-03-27 Method: ELECTRON MICROSCOPY (5 Å) Cite: Structural basis of Mfd-dependent transcription termination. Nucleic Acids Res., 48, 2020
5GAS	Thermus thermophilus V/A-ATPase, conformation 2 Descriptor: Archaeal/vacuolar-type H+-ATPase subunit I, V-type ATP synthase alpha chain, V-type ATP synthase beta chain, ... Authors: Schep, D.G, Zhao, J, Rubinstein, J.L. Deposit date: 2016-02-05 Release date: 2016-03-09 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (9.5 Å) Cite: Models for the a subunits of the Thermus thermophilus V/A-ATPase and Saccharomyces cerevisiae V-ATPase enzymes by cryo-EM and evolutionary covariance. Proc.Natl.Acad.Sci.USA, 113, 2016
5I2K	Structure of the human GluN1/GluN2A LBD in complex with 7-{[ethyl(4-fluorophenyl)amino]methyl}-N,2-dimethyl-5-oxo-5H-[1,3]thiazolo[3,2-a]pyrimidine-3-carboxamide (compound 19) Descriptor: 7-{[ethyl(4-fluorophenyl)amino]methyl}-N,2-dimethyl-5-oxo-5H-[1,3]thiazolo[3,2-a]pyrimidine-3-carboxamide, GLUTAMIC ACID, GLYCINE, ... Authors: Wallweber, H.J.A, Lupardus, P.J. Deposit date: 2016-02-09 Release date: 2016-03-16 Last modified: 2024-10-23 Method: X-RAY DIFFRACTION (2.86 Å) Cite: Discovery of GluN2A-Selective NMDA Receptor Positive Allosteric Modulators (PAMs): Tuning Deactivation Kinetics via Structure-Based Design. J.Med.Chem., 59, 2016
6VOJ	Chloroplast ATP synthase (R3, CF1FO) Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase delta chain, ... Authors: Yang, J.-H, Williams, D, Kandiah, E, Fromme, P, Chiu, P.-L. Deposit date: 2020-01-30 Release date: 2020-09-09 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (4.34 Å) Cite: Structural basis of redox modulation on chloroplast ATP synthase. Commun Biol, 3, 2020
6VOM	Chloroplast ATP synthase (R2, CF1) Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase delta chain, ... Authors: Yang, J.-H, Williams, D, Kandiah, E, Fromme, P, Chiu, P.-L. Deposit date: 2020-01-30 Release date: 2020-09-09 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Structural basis of redox modulation on chloroplast ATP synthase. Commun Biol, 3, 2020
5I2N	Structure of the human GluN1/GluN2A LBD in complex with N-ethyl-7-{[2-fluoro-3-(trifluoromethyl)phenyl]methyl}-2-methyl-5-oxo-5H-[1,3]thiazolo[3,2-a]pyrimidine-3-carboxamide (compound 29) Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CALCIUM ION, GLUTAMIC ACID, ... Authors: Wallweber, H.J.A, Lupardus, P.J. Deposit date: 2016-02-09 Release date: 2016-03-16 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (2.12 Å) Cite: Discovery of GluN2A-Selective NMDA Receptor Positive Allosteric Modulators (PAMs): Tuning Deactivation Kinetics via Structure-Based Design. J.Med.Chem., 59, 2016
6VMD	Chloroplast ATP synthase (C1, CF1) Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase delta chain, ... Authors: Yang, J.-H, Williams, D, Kandiah, E, Fromme, P, Chiu, P.-L. Deposit date: 2020-01-27 Release date: 2020-09-09 Last modified: 2020-09-16 Method: ELECTRON MICROSCOPY (4.53 Å) Cite: Structural basis of redox modulation on chloroplast ATP synthase. Commun Biol, 3, 2020
6WXB	Cryo-EM Structure of Influenza Hemagglutinin (HA) Trimer Vitrified Using Back-it-up Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin, beta-D-mannopyranose Authors: Tan, Y.Z, Rubinstein, J.L. Deposit date: 2020-05-10 Release date: 2020-05-20 Last modified: 2020-11-18 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Through-grid wicking enables high-speed cryoEM specimen preparation. Acta Crystallogr D Struct Biol, 76, 2020
5IDM	Bifunctional histidine kinase CckA (domain, CA) in complex with c-di-GMP and AMPPNP/Mg2+ Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), Cell cycle histidine kinase CckA, MAGNESIUM ION, ... Authors: Dubey, B.N, Schirmer, T. Deposit date: 2016-02-24 Release date: 2016-10-05 Last modified: 2024-06-19 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Cyclic di-GMP mediates a histidine kinase/phosphatase switch by noncovalent domain cross-linking. Sci Adv, 2, 2016

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