Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6EJM
DownloadVisualize
BU of 6ejm by Molmil
CRYSTAL STRUCTURE OF HUMAN CD81 LARGE EXTRACELLULAR LOOP IN COMPLEX WITH SINGLE CHAIN FV FRAGMENT 5
Descriptor: CD81 antigen, SINGLE CHAIN FV FRAGMENT
Authors:Kuglstatter, A, Harris, S.F, Villasenor, A.
Deposit date:2017-09-22
Release date:2018-05-30
Last modified:2018-06-20
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structure-Guided Combinatorial Engineering Facilitates Affinity and Specificity Optimization of Anti-CD81 Antibodies.
J. Mol. Biol., 430, 2018
6EK2
DownloadVisualize
BU of 6ek2 by Molmil
CRYSTAL STRUCTURE OF HUMAN CD81 LARGE EXTRACELLULAR LOOP IN COMPLEX WITH SINGLE CHAIN FV FRAGMENT 10
Descriptor: CD81 antigen, SINGLE CHAIN FV FRAGMENT
Authors:Harris, S.F, Villasenor, A, Kuglstatter, A.
Deposit date:2017-09-25
Release date:2018-05-30
Last modified:2018-06-20
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structure-Guided Combinatorial Engineering Facilitates Affinity and Specificity Optimization of Anti-CD81 Antibodies.
J. Mol. Biol., 430, 2018
6OAI
DownloadVisualize
BU of 6oai by Molmil
Crystal structure of P[6] rotavirus vp8* complexed with LNFPI
Descriptor: Protease-sensitive outer capsid protein, alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
Authors:Xu, S, Liu, Y, Jiang, X, Kennedy, M.A.
Deposit date:2019-03-16
Release date:2020-03-18
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Molecular basis of P[II] major human rotavirus VP8* domain recognition of histo-blood group antigens.
Plos Pathog., 16, 2020
7D5Q
DownloadVisualize
BU of 7d5q by Molmil
Structure of NorC transporter (K398A mutant) in an outward-open conformation in complex with a single-chain Indian camelid antibody
Descriptor: Drug transporter, putative, ICab, ...
Authors:Kumar, S, Athreya, A, Penmatsa, A.
Deposit date:2020-09-27
Release date:2021-06-09
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Structural basis of inhibition of a transporter from Staphylococcus aureus, NorC, through a single-domain camelid antibody.
Commun Biol, 4, 2021
7D5P
DownloadVisualize
BU of 7d5p by Molmil
Structure of NorC transporter in an outward-open conformation in complex with a single-chain Indian camelid antibody
Descriptor: Drug transporter, putative, ICab, ...
Authors:Kumar, S, Athreya, A, Penmatsa, A.
Deposit date:2020-09-27
Release date:2021-06-09
Last modified:2021-07-14
Method:X-RAY DIFFRACTION (3.65 Å)
Cite:Structural basis of inhibition of a transporter from Staphylococcus aureus, NorC, through a single-domain camelid antibody.
Commun Biol, 4, 2021
2QEG
DownloadVisualize
BU of 2qeg by Molmil
B-DNA with 7-deaza-dG modification
Descriptor: DNA (5'-D(*DCP*DGP*DCP*DGP*DAP*DAP*DTP*DTP*DCP*(7GU)P*DCP*DG)-3')
Authors:Wang, F, Li, F, Ganguly, M, Marky, L.A, Gold, B, Egli, M, Stone, M.P.
Deposit date:2007-06-25
Release date:2008-05-06
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:A bridging water anchors the tethered 5-(3-aminopropyl)-2'-deoxyuridine amine in the DNA major groove proximate to the N+2 C.G base pair: implications for formation of interstrand 5'-GNC-3' cross-links by nitrogen mustards.
Biochemistry, 47, 2008
2QEF
DownloadVisualize
BU of 2qef by Molmil
X-ray structure of 7-deaza-dG and Z3dU modified duplex CGCGAATXCZCG
Descriptor: DNA (5'-D(*DCP*DGP*DCP*DGP*DAP*DAP*DTP*(ZDU)P*DCP*(7GU)P*DCP*DG)-3')
Authors:Wang, F, Li, F, Ganguly, M, Marky, L.A, Gold, B, Egli, M, Stone, M.P.
Deposit date:2007-06-25
Release date:2008-05-06
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:A bridging water anchors the tethered 5-(3-aminopropyl)-2'-deoxyuridine amine in the DNA major groove proximate to the N+2 C.G base pair: implications for formation of interstrand 5'-GNC-3' cross-links by nitrogen mustards.
Biochemistry, 47, 2008
3B64
DownloadVisualize
BU of 3b64 by Molmil
Macrophage Migration Inhibitory Factor (MIF) From /Leishmania Major
Descriptor: ISOPROPYL ALCOHOL, Macrophage migration inhibitory factor-like protein
Authors:Zierow, S, Cho, Y, Lolis, E.
Deposit date:2007-10-27
Release date:2008-06-10
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.03 Å)
Cite:A leishmania ortholog of macrophage migration inhibitory factor modulates host macrophage responses.
J.Immunol., 180, 2008
8R8Q
DownloadVisualize
BU of 8r8q by Molmil
Lysosomal peptide transporter
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Glycosylated lysosomal membrane protein, Major facilitator superfamily domain-containing protein 1
Authors:Jungnickel, K.E.J, Loew, C.
Deposit date:2023-11-29
Release date:2024-05-01
Method:ELECTRON MICROSCOPY (4.08 Å)
Cite:Lysosomal peptide transporter
To Be Published
3TUE
DownloadVisualize
BU of 3tue by Molmil
The structure of tryparedoxin peroxidase I from Leishmania major
Descriptor: Tryparedoxin peroxidase
Authors:Fiorillo, A, Ilari, A, Colotti, G.
Deposit date:2011-09-16
Release date:2012-09-05
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:The crystal structures of the tryparedoxin-tryparedoxin peroxidase couple unveil the structural determinants of leishmania detoxification pathway.
Plos Negl Trop Dis, 6, 2012
1PW4
DownloadVisualize
BU of 1pw4 by Molmil
Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Descriptor: Glycerol-3-phosphate transporter
Authors:Huang, Y, Lemieux, M.J, Song, J, Auer, M, Wang, D.N.
Deposit date:2003-06-30
Release date:2003-08-05
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structure and Mechanism of the Glycerol-3-Phosphate Transporter from Escherichia Coli
Science, 301, 2003
7KCJ
DownloadVisualize
BU of 7kcj by Molmil
The crystal structure of the translation initiation factor EIF4E5 from Leishmania major
Descriptor: Eukaryotic translation initiation factor 4E type 5
Authors:Lima, G.B, Guimaraes, B.G.
Deposit date:2020-10-05
Release date:2021-06-02
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.997 Å)
Cite:The translation initiation factor EIF4E5 from Leishmania: crystal structure and interacting partners.
Rna Biol., 18, 2021
7X00
DownloadVisualize
BU of 7x00 by Molmil
Crystal structure of peptide VSFIEFVGW in complex with HLA-B5801
Descriptor: Beta-2-microglobulin, GLYCEROL, MHC class I antigen, ...
Authors:Huan, X, Ren, E.C.
Deposit date:2022-02-20
Release date:2023-05-03
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Allopurinol non-covalently facilitates binding of unconventional peptides to HLA-B*58:01.
Sci Rep, 13, 2023
7WZZ
DownloadVisualize
BU of 7wzz by Molmil
Crystal structure of peptide KAGQVVTIW in complex with HLA-B5801
Descriptor: Beta-2-microglobulin, GLYCEROL, LYS-ALA-GLY-GLN-VAL-VAL-THR-ILE-TRP, ...
Authors:Huan, X, Ren, E.C.
Deposit date:2022-02-20
Release date:2023-05-03
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.305 Å)
Cite:Allopurinol non-covalently facilitates binding of unconventional peptides to HLA-B*58:01.
Sci Rep, 13, 2023
7X1B
DownloadVisualize
BU of 7x1b by Molmil
Crystal structure of peptide KAGQVVTI in complex with HLA-B5801
Descriptor: Beta-2-microglobulin, GLYCEROL, HLA-B, ...
Authors:Huan, X, Ren, E.C.
Deposit date:2022-02-23
Release date:2023-05-03
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.399 Å)
Cite:Allopurinol non-covalently facilitates binding of unconventional peptides to HLA-B*58:01.
Sci Rep, 13, 2023
7X1C
DownloadVisualize
BU of 7x1c by Molmil
Crystal structure of peptide VSFIEFVI in complex with HLA-B5801
Descriptor: Beta-2-microglobulin, GLYCEROL, HLA-B, ...
Authors:Huan, X, Ren, E.C.
Deposit date:2022-02-23
Release date:2023-05-03
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.409 Å)
Cite:Allopurinol non-covalently facilitates binding of unconventional peptides to HLA-B*58:01.
Sci Rep, 13, 2023
8K35
DownloadVisualize
BU of 8k35 by Molmil
Structure of the bacteriophage lambda tail tip complex
Descriptor: IRON/SULFUR CLUSTER, Tail tip assembly protein I, Tail tip protein L, ...
Authors:Xiao, H, Tan, L, Cheng, L.P, Liu, H.R.
Deposit date:2023-07-14
Release date:2023-11-15
Last modified:2024-01-17
Method:ELECTRON MICROSCOPY (3.44 Å)
Cite:Structure of the siphophage neck-Tail complex suggests that conserved tail tip proteins facilitate receptor binding and tail assembly.
Plos Biol., 21, 2023
8K36
DownloadVisualize
BU of 8k36 by Molmil
Structure of the bacteriophage lambda tail tube
Descriptor: Tail tube protein
Authors:Xiao, H, Tan, L, Cheng, L.P, Liu, H.R.
Deposit date:2023-07-14
Release date:2023-11-15
Last modified:2024-01-17
Method:ELECTRON MICROSCOPY (3.48 Å)
Cite:Structure of the siphophage neck-Tail complex suggests that conserved tail tip proteins facilitate receptor binding and tail assembly.
Plos Biol., 21, 2023
8K37
DownloadVisualize
BU of 8k37 by Molmil
Structure of the bacteriophage lambda neck
Descriptor: Head-tail connector protein FII, Tail tube protein, Tail tube terminator protein
Authors:Xiao, H, Tan, L, Cheng, L.P, Liu, H.R.
Deposit date:2023-07-14
Release date:2023-11-15
Last modified:2024-01-17
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structure of the siphophage neck-Tail complex suggests that conserved tail tip proteins facilitate receptor binding and tail assembly.
Plos Biol., 21, 2023
6CRH
DownloadVisualize
BU of 6crh by Molmil
Structure of human DNA polymerase beta complexed with 8-ClG in the template base paired with incoming non-hydrolyzable GTP
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine, DNA (5'-D(*CP*CP*GP*AP*CP*(CGM)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), ...
Authors:Koag, M.-C, Lee, S.
Deposit date:2018-03-17
Release date:2019-03-20
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.327 Å)
Cite:Promutagenicity of 8-Chloroguanine, A Major Inflammation-Induced Halogenated DNA Lesion.
Molecules, 24, 2019
3S9F
DownloadVisualize
BU of 3s9f by Molmil
The structure of Tryparedoxin I from Leishmania major
Descriptor: MAGNESIUM ION, Tryparedoxin
Authors:Fiorillo, A, Ilari, A, Colotti, G.
Deposit date:2011-06-01
Release date:2012-06-13
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The crystal structures of the tryparedoxin-tryparedoxin peroxidase couple unveil the structural determinants of Leishmania detoxification pathway.
Plos Negl Trop Dis, 6, 2012
4XUS
DownloadVisualize
BU of 4xus by Molmil
Crystal structure of the pre-catalytic ternary complex of DNA polymerase lambda with a templating A and an incoming dTTP
Descriptor: 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE, DNA (5'-D(*CP*AP*GP*TP*A)-3'), DNA (5'-D(*CP*GP*GP*CP*AP*GP*TP*AP*CP*TP*G)-3'), ...
Authors:Burak, M.J, Guja, K.E, Garcia-Diaz, M.
Deposit date:2015-01-26
Release date:2016-02-03
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Nucleotide binding interactions modulate dNTP selectivity and facilitate 8-oxo-dGTP incorporation by DNA polymerase lambda.
Nucleic Acids Res., 43, 2015
4YB9
DownloadVisualize
BU of 4yb9 by Molmil
Crystal structure of the Bovine Fructose transporter GLUT5 in an open inward-facing conformation
Descriptor: Solute carrier family 2, facilitated glucose transporter member 5
Authors:Verdon, G, Kang, H.J, Iwata, S, Drew, D.
Deposit date:2015-02-18
Release date:2015-10-14
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structure and mechanism of the mammalian fructose transporter GLUT5.
Nature, 526, 2015
6JZK
DownloadVisualize
BU of 6jzk by Molmil
Structure of FimA type-1 (FimA1) prepilin of the type V major fimbrium
Descriptor: GLYCEROL, Major fimbrium subunit FimA type-1, S,R MESO-TARTARIC ACID, ...
Authors:Okada, K, Shoji, M, Nakayam, K, Imada, K.
Deposit date:2019-05-02
Release date:2020-04-15
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of polymerized type V pilin reveals assembly mechanism involving protease-mediated strand exchange.
Nat Microbiol, 5, 2020
4IKX
DownloadVisualize
BU of 4ikx by Molmil
Crystal structure of peptide transporter POT (E310Q mutant)
Descriptor: Di-tripeptide ABC transporter (Permease), OLEIC ACID, SULFATE ION
Authors:Doki, S, Kato, H.E, Ishitani, R, Nureki, O.
Deposit date:2012-12-28
Release date:2013-07-10
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for dynamic mechanism of proton-coupled symport by the peptide transporter POT.
Proc.Natl.Acad.Sci.USA, 110, 2013

220760

PDB entries from 2024-06-05

PDB statisticsPDBj update infoContact PDBjnumon