PDB: 13413 resultsInfo pagesStatus searchChemie searchBIRD

---

2YU3	Solution structure of the domain swapped WingedHelix in DNA-directed RNA polymerase III 39 kDa polypeptide Descriptor: DNA-directed RNA polymerase III 39 kDa polypeptide F variant Authors: He, F, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2007-04-05 Release date: 2007-10-09 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Solution structure of the domain swapped WingedHelix in DNA-directed RNA polymerase III 39 kDa polypeptide To be Published
2L0I	Solution structure of Rtt103 CTD-interacting domain bound to a Ser2 phosphorylated CTD peptide Descriptor: DNA-directed RNA polymerase, Regulator of Ty1 transposition protein 103 Authors: Lunde, B.M, Reichow, S.L, Kim, M, Suh, H, Leeper, T.C, Yang, F, Mutschler, H, Buratowski, S, Meinhart, A, Varani, G. Deposit date: 2010-07-06 Release date: 2010-09-08 Last modified: 2011-07-13 Method: SOLUTION NMR Cite: Cooperative interaction of transcription termination factors with the RNA polymerase II C-terminal domain. Nat.Struct.Mol.Biol., 17, 2010
1U09	Footand Mouth Disease Virus RNA-dependent RNA polymerase Descriptor: polyprotein Authors: Ferrer-Orta, C, Arias, A, Perez-Luque, R, Escarmis, C, Domingo, E, Verdaguer, N. Deposit date: 2004-07-13 Release date: 2004-08-31 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.91 Å) Cite: Structure of Foot-and-Mouth Disease Virus RNA-dependent RNA Polymerase and Its Complex with a Template-Primer RNA J.Biol.Chem., 279, 2004
3E7H	The crystal structure of the beta subunit of the DNA-directed RNA polymerase from Vibrio cholerae O1 biovar eltor Descriptor: DNA-directed RNA polymerase subunit beta Authors: Zhang, R, Wu, R, Freeman, L, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) Deposit date: 2008-08-18 Release date: 2008-10-14 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.7 Å) Cite: The crystal structure of the beta subunit of the DNA-directed RNA polymerase from Vibrio cholerae O1 biovar eltor To be Published
1Z31	The structure of an enzyme-activating fragment of human telomerase RNA Descriptor: human telomerase PJ6 hairpin Authors: Leeper, T.C, Varani, G. Deposit date: 2005-03-10 Release date: 2005-03-22 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: The structure of an enzyme-activating fragment of human telomerase RNA. RNA, 11, 2005
4IQZ	The crystal structure of a large insert in RNA polymerase (RpoC) subunit from E. coli Descriptor: DNA-directed RNA polymerase subunit beta', IODIDE ION, SODIUM ION Authors: Bhandari, V, Sugiman-Marangos, S.N, Naushad, H.S, Gupta, R.S, Junop, M.S. Deposit date: 2013-01-14 Release date: 2013-02-13 Method: X-RAY DIFFRACTION (2.1 Å) Cite: The crystal structure of a large insert in RNA polymerase (RpoC) subunit from E. coli To be Published
1SKP	NMR STRUCTURE OF D(GCATATGATAG)(DOT)D(CTATCATATGC): A CONSENSUS SEQUENCE FOR PROMOTERS RECOGNIZED BY SIGMA-K RNA POLYMERASE, 4 STRUCTURES Descriptor: SIGMA-K RNA POLYMERASE CONSENSUS SEQUENCE Authors: Tonelli, M, Ragg, E, Bianucci, A.M, Lesiak, K, James, T.L. Deposit date: 1998-05-20 Release date: 1999-01-13 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Nuclear magnetic resonance structure of d(GCATATGATAG). d(CTATCATATGC): a consensus sequence for promoters recognized by sigma K RNA polymerase. Biochemistry, 37, 1998
1F78	SOLUTION STRUCTURE OF RNASE P RNA (M1 RNA) P4 STEM OLIGORIBONUCLEOTIDE COMPLEXED WITH COBALT (III) HEXAMINE, NMR, MINIMIZED AVERAGE STRUCTURE Descriptor: COBALT HEXAMMINE(III), RNASE P RNA RIBOZYME, P4 DOMAIN Authors: Schmitz, M, Tinoco Jr, I. Deposit date: 2000-06-26 Release date: 2000-10-09 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure and metal-ion binding of the P4 element from bacterial RNase P RNA. RNA, 6, 2000
1F79	SOLUTION STRUCTURE OF RNASE P RNA (M1 RNA) P4 STEM C70U MUTANT OLIGORIBONUCLEOTIDE COMPLEXED WITH COBALT(III) HEXAMMINE, NMR, MINIMIZED AVERAGE STRUCTURE Descriptor: COBALT HEXAMMINE(III), RNASE P RNA RIBOZYME, P4 DOMAIN MUTANT Authors: Schmitz, M, Tinoco Jr, I. Deposit date: 2000-06-23 Release date: 2000-10-09 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure and metal-ion binding of the P4 element from bacterial RNase P RNA. RNA, 6, 2000
1F7H	SOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM OLIGORIBONUCLEOTIDE COMPLEXED WITH COBALT (III) HEXAMINE, NMR, ENSEMBLE OF 11 STRUCTURES Descriptor: COBALT HEXAMMINE(III), RNASE P RNA RIBOZYME, P4 DOMAIN Authors: Schmitz, M, Tinoco Jr, I. Deposit date: 2000-06-27 Release date: 2000-10-09 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure and metal-ion binding of the P4 element from bacterial RNase P RNA. RNA, 6, 2000
1F7I	SOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM C70U MUTANT OLIGORIBONUCLEOTIDE COMPLEXED WITH COBALT (III) HEXAMINE ,NMR, ENSEMBLE OF 12 STRUCTURES Descriptor: COBALT HEXAMMINE(III), RNASE P RNA RIBOZYME, P4 DOMAIN Authors: Schmitz, M, Tinoco Jr, I. Deposit date: 2000-06-27 Release date: 2000-10-09 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure and metal-ion binding of the P4 element from bacterial RNase P RNA. RNA, 6, 2000
5VKL	SPT6 tSH2-RPB1 1476-1500 pS1493 Descriptor: DNA-directed RNA polymerase II subunit RPB1, Transcription elongation factor SPT6 Authors: Sdano, M.A, Whitby, F.G, Hill, C.P. Deposit date: 2017-04-21 Release date: 2017-10-25 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.198 Å) Cite: A novel SH2 recognition mechanism recruits Spt6 to the doubly phosphorylated RNA polymerase II linker at sites of transcription. Elife, 6, 2017
5VKO	SPT6 tSH2-RPB1 1468-1500 pT1471, pS1493 Descriptor: DNA-directed RNA polymerase II subunit RPB1, ISOPROPYL ALCOHOL, Transcription elongation factor SPT6 Authors: Sdano, M.A, Whitby, F.G, Hill, C.P. Deposit date: 2017-04-21 Release date: 2017-09-20 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.8 Å) Cite: A novel SH2 recognition mechanism recruits Spt6 to the doubly phosphorylated RNA polymerase II linker at sites of transcription. Elife, 6, 2017
1KU2	Crystal Structure of Thermus aquaticus RNA Polymerase Sigma Subunit Fragment Containing Regions 1.2 to 3.1 Descriptor: SULFATE ION, sigma factor sigA Authors: Campbell, E.A, Muzzin, O, Chlenov, M, Sun, J.L, Olson, C.A, Weinman, O, Trester-Zedlitz, M.L, Darst, S.A. Deposit date: 2002-01-21 Release date: 2002-04-03 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Structure of the bacterial RNA polymerase promoter specificity sigma subunit. Mol.Cell, 9, 2002
2KRC	Solution structure of the N-terminal domain of Bacillus subtilis delta subunit of RNA polymerase Descriptor: DNA-directed RNA polymerase subunit delta Authors: Motackova, V, Sanderova, H, Zidek, L, Novacek, J, Padrta, P, Svenkova, A, Jonak, J, Krasny, L, Sklenar, V. Deposit date: 2009-12-16 Release date: 2010-04-07 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Solution structure of the N-terminal domain of Bacillus subtilis delta subunit of RNA polymerase and its classification based on structural homologs Proteins, 78, 2010
3PJP	A Tandem SH2 Domain in Transcription Elongation Factor Spt6 Binds the Phosphorylated RNA Polymerase II C-terminal Repeat Domain(CTD) Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ACETATE ION, Transcription elongation factor SPT6 Authors: Sun, M, Lariviere, L, Dengl, S, Mayer, A, Cramer, P. Deposit date: 2010-11-10 Release date: 2010-11-24 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.6 Å) Cite: A tandem SH2 domain in transcription elongation factor Spt6 binds the phosphorylated RNA polymerase II C-terminal repeat domain (CTD). J.Biol.Chem., 285, 2010
2F88	Solution NMR structure of domain 5 from the Pyaiella littoralis (PL) group II intron Descriptor: D5-PL RNA RIBOZYME DOMAIN Authors: Dayie, K.T. Deposit date: 2005-12-02 Release date: 2006-02-28 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Structure of a self-splicing group II intron catalytic effector domain 5: parallels with spliceosomal U6 RNA Rna, 12, 2006
7NKY	RNA Polymerase II-Spt4/5-nucleosome-FACT structure Descriptor: Chromatin elongation factor SPT4, DNA (138-MER), DNA (148-MER), ... Authors: Farnung, L, Ochmann, M, Engeholm, M, Cramer, P. Deposit date: 2021-02-19 Release date: 2021-07-07 Last modified: 2024-07-10 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Structural basis of nucleosome transcription mediated by Chd1 and FACT. Nat.Struct.Mol.Biol., 28, 2021
7ZPM	Influenza A/H7N9 polymerase apo-protein dimer complex Descriptor: Polymerase acidic protein, Polymerase basic protein 2, RNA-directed RNA polymerase catalytic subunit Authors: Cusack, S, Kouba, T. Deposit date: 2022-04-27 Release date: 2022-12-28 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (2.81 Å) Cite: Direct observation of backtracking by influenza A and B polymerases upon consecutive incorporation of the nucleoside analog T1106. Cell Rep, 42, 2023
8FFZ	TFIIIA-TFIIIC-Brf1-TBP complex bound to 5S rRNA gene Descriptor: DNA (151-MER), Transcription factor IIIA, Transcription factor IIIB 70 kDa subunit,TATA-box-binding protein, ... Authors: Talyzina, A, He, Y. Deposit date: 2022-12-11 Release date: 2023-06-21 Last modified: 2023-08-16 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Structural basis of TFIIIC-dependent RNA polymerase III transcription initiation. Mol.Cell, 83, 2023
5CCV	Crystal structure of full-length NS5 from dengue virus type 3 Descriptor: RNA-directed RNA polymerase NS5, S-ADENOSYL-L-HOMOCYSTEINE, ZINC ION Authors: Klema, V.J, Choi, K.H. Deposit date: 2015-07-02 Release date: 2016-02-03 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (3.6 Å) Cite: Dengue Virus Nonstructural Protein 5 (NS5) Assembles into a Dimer with a Unique Methyltransferase and Polymerase Interface. Plos Pathog., 12, 2016
8H69	Cryo-EM structure of influenza RNA polymerase Descriptor: Polymerase acidic protein, Polymerase basic protein 2, RNA (5'-R(*UP*AP*AP*AP*CP*UP*CP*CP*UP*GP*CP*UP*UP*UP*UP*GP*CP*U)-3'), ... Authors: Li, H, Wu, Y, Liang, H, Liu, Y. Deposit date: 2022-10-16 Release date: 2023-06-28 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: An intermediate state allows influenza polymerase to switch smoothly between transcription and replication cycles. Nat.Struct.Mol.Biol., 30, 2023
4ZPB	Coxsackievirus B3 Polymerase - F364W mutant Descriptor: RNA-directed RNA polymerase Authors: Peersen, O.B, McDonald, S.M. Deposit date: 2015-05-07 Release date: 2016-05-11 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.797 Å) Cite: Design of a Genetically Stable High Fidelity Coxsackievirus B3 Polymerase That Attenuates Virus Growth in Vivo. J.Biol.Chem., 291, 2016
4ZPD	Coxsackievirus B3 Polymerase - A345V mutant Descriptor: RNA-directed RNA polymerase Authors: Peersen, O.B, McDonald, S.M. Deposit date: 2015-05-07 Release date: 2016-05-11 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.797 Å) Cite: Design of a Genetically Stable High Fidelity Coxsackievirus B3 Polymerase That Attenuates Virus Growth in Vivo. J.Biol.Chem., 291, 2016
4ZP8	Coxsackievirus B3 Polymerase - F364L mutant Descriptor: RNA-dependent RNA polymerase Authors: Peersen, O.B, McDonald, S.M. Deposit date: 2015-05-07 Release date: 2016-05-11 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.894 Å) Cite: Design of a Genetically Stable High Fidelity Coxsackievirus B3 Polymerase That Attenuates Virus Growth in Vivo. J.Biol.Chem., 291, 2016

<38394041424344454647484950515253>