Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5F2F
DownloadVisualize
BU of 5f2f by Molmil
Crystal structure of para-biphenyl-2-methyl-3', 5' di-methyl amide mannoside bound to FimH lectin domain
Descriptor: 5-[4-[(2~{R},3~{S},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3-methyl-phenyl]-~{N}1,~{N}3-dimethyl-benzene-1,3-dicarboxamide, GLYCEROL, Protein FimH
Authors:Kalas, V, Hultgren, S.J.
Deposit date:2015-12-01
Release date:2016-05-04
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.665 Å)
Cite:Antivirulence Isoquinolone Mannosides: Optimization of the Biaryl Aglycone for FimH Lectin Binding Affinity and Efficacy in the Treatment of Chronic UTI.
Chemmedchem, 11, 2016
2L4A
DownloadVisualize
BU of 2l4a by Molmil
NMR structure of the DNA-binding domain of E.coli Lrp
Descriptor: Leucine responsive regulatory protein
Authors:Kawamura, T, Zhou, H, Dahlquist, F.W.
Deposit date:2010-10-01
Release date:2011-03-09
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:The design involved in PapI and Lrp regulation of the pap operon.
J.Mol.Biol., 409, 2011
2L3B
DownloadVisualize
BU of 2l3b by Molmil
Solution NMR structure of the BT_0084 lipoprotein from Bacteroides thetaiotaomicron, Northeast Structural Genomics Consortium Target BtR376
Descriptor: Conserved protein found in conjugate transposon
Authors:Ramelot, T.A, Yang, Y, Wang, D, Ciccosanti, C, Janjua, H, Acton, T.B, Xiao, R, Everett, J.K, Montelione, G.T, Kennedy, M.A, Northeast Structural Genomics Consortium (NESG)
Deposit date:2010-09-10
Release date:2010-11-10
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution NMR structure of BT_0084, a conjugative transposon lipoprotein from Bacteroides thetaiotamicron.
Proteins, 80, 2012
2L7Q
DownloadVisualize
BU of 2l7q by Molmil
Solution NMR structure of conjugate transposon protein BVU_1572(27-141) from Bacteroides Vulgatus, Northeast Structural Genomics Consortium Target BvR155
Descriptor: Conserved protein found in conjugate transposon
Authors:Yang, Y, Ramelot, T.A, Cort, J.R, Wang, D, Ciccosanti, C, Janjua, H, Acton, T.B, Xiao, R, Everett, J.K, Montelione, G.T, Kennedy, M.A, Northeast Structural Genomics Consortium (NESG)
Deposit date:2010-12-20
Release date:2010-12-29
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution NMR structure of BT_0084, a conjugative transposon lipoprotein from Bacteroides thetaiotamicron.
Proteins, 80, 2012
6GEB
DownloadVisualize
BU of 6geb by Molmil
X-ray structure of the Legionella pneumophila ATPase DotB
Descriptor: DotB, PHOSPHATE ION
Authors:Prevost, M.S, Waksman, G.
Deposit date:2018-04-26
Release date:2018-05-30
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.19 Å)
Cite:X-ray crystal structures of the type IVb secretion system DotB ATPases.
Protein Sci., 27, 2018
8PDZ
DownloadVisualize
BU of 8pdz by Molmil
Recombinant Ena3A L-Type endospore appendages
Descriptor: DUF3992 domain-containing protein
Authors:Sleutel, M, Remaut, H.
Deposit date:2023-06-13
Release date:2023-11-08
Method:ELECTRON MICROSCOPY (3.32 Å)
Cite:A novel class of ultra-stable endospore appendages decorated with collagen-like tip fibrillae
Biorxiv, 2023
5HTL
DownloadVisualize
BU of 5htl by Molmil
Structure of MshE with cdg
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), MSHA biogenesis protein MshE
Authors:Chin, K.H, Wang, Y.C.
Deposit date:2016-01-27
Release date:2016-10-05
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.371 Å)
Cite:Nucleotide binding by the widespread high-affinity cyclic di-GMP receptor MshEN domain.
Nat Commun, 7, 2016
5SUX
DownloadVisualize
BU of 5sux by Molmil
Crystal Structure of ToxT from Vibrio Cholerae O395 bound to (E)-4-(8-methylnaphthalen-1-yl)but-3-enoic acid
Descriptor: (3E)-4-(8-methylnaphthalen-1-yl)but-3-enoic acid, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, AraC family transcriptional regulator
Authors:Kull, F.J, Kelley, A.R.
Deposit date:2016-08-04
Release date:2017-04-12
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of ToxT from Vibrio Cholerae O395 bound to (E)-4-(8-methylnaphthalen-1-yl)but-3-enoic acid
To Be Published
2MHJ
DownloadVisualize
BU of 2mhj by Molmil
Solution structure of TpsB4 N-terminal POTRA domain from Pseudomonas aeruginosa
Descriptor: TpsB4 protein
Authors:Garnett, J.A, Matthews, S.J.
Deposit date:2013-11-25
Release date:2014-12-24
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structure-function analysis reveals that the Pseudomonas aeruginosa Tps4 two-partner secretion system is involved in CupB5 translocation.
Protein Sci., 24, 2015
3ZPD
DownloadVisualize
BU of 3zpd by Molmil
Solution structure of the FimH adhesin carbohydrate-binding domain
Descriptor: FIMH
Authors:van Nuland, N.A.J, Vanwetswinkel, S, Vranken, W.F, Buts, L.
Deposit date:2013-02-27
Release date:2014-02-12
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Study of the Structural and Dynamic Effects in the Fimh Adhesin Upon Alpha-D-Heptyl Mannose Binding.
J.Med.Chem., 57, 2014
2BHM
DownloadVisualize
BU of 2bhm by Molmil
Crystal structure of VirB8 from Brucella suis
Descriptor: TYPE IV SECRETION SYSTEM PROTEIN VIRB8
Authors:Bayliss, R, Baron, C, Waksman, G.
Deposit date:2005-01-14
Release date:2005-03-16
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structures of Two Core Subunits of the Bacterial Type Iv Secretion System, Virb8 from Brucella Suis and Comb10 from Helicobacter Pylori
Proc.Natl.Acad.Sci.USA, 102, 2005
2BSC
DownloadVisualize
BU of 2bsc by Molmil
E. coli F17a-G lectin domain complex with N-acetylglucosamine, high- resolution structure
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, F17A-G ADHESIN
Authors:Buts, L, Wellens, A, Van Molle, I, Wyns, L, Loris, R, Lahmann, M, Oscarson, S, De Greve, H, Bouckaert, J.
Deposit date:2005-05-20
Release date:2006-05-24
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Impact of Natural Variation in Bacterial F17G Adhesins on Crystallization Behaviour.
Acta Crystallogr.,Sect.D, 61, 2005
2BS8
DownloadVisualize
BU of 2bs8 by Molmil
Crystal structure of F17b-G in complex with N-acetyl-D-glucosamine
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ADHESIN
Authors:Buts, L, Wellens, A, VanMolle, I, Wyns, L, Loris, R, Lahmann, M, Oscarson, S, DeGreve, H, Bouckaert, J.
Deposit date:2005-05-18
Release date:2005-08-19
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Impact of Natural Variation in Bacterial F17G Adhesins on Crystallization Behaviour.
Acta Crystallogr.,Sect.D, 61, 2005
6EF8
DownloadVisualize
BU of 6ef8 by Molmil
Cryo-EM of the OmcS nanowires from Geobacter sulfurreducens
Descriptor: C-type cytochrome OmcS, HEME C
Authors:Wang, F, Gu, Y, Egelman, E.H, Malvankar, N.S.
Deposit date:2018-08-16
Release date:2019-04-10
Last modified:2019-11-27
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structure of Microbial Nanowires Reveals Stacked Hemes that Transport Electrons over Micrometers.
Cell, 177, 2019
6EVU
DownloadVisualize
BU of 6evu by Molmil
Adhesin domain of PrgB from Enterococcus faecalis
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, PHOSPHATE ION, PrgB
Authors:Schmitt, A, Berntsson, R.P.A.
Deposit date:2017-11-02
Release date:2018-05-16
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.598 Å)
Cite:PrgB promotes aggregation, biofilm formation, and conjugation through DNA binding and compaction.
Mol. Microbiol., 109, 2018
2BHV
DownloadVisualize
BU of 2bhv by Molmil
Structure of ComB10 of the Com Type IV secretion system of Helicobacter pylori
Descriptor: COMB10
Authors:Terradot, L, Oomen, C, Bayliss, R, Leonard, G, Waksman, G.
Deposit date:2005-01-18
Release date:2005-03-16
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structures of Two Core Subunits of the Bacterial Type Iv Secretion System, Virb8 from Brucella Suis and Comb10 from Helicobacter Pylori
Proc.Natl.Acad.Sci.USA, 102, 2005
2BS7
DownloadVisualize
BU of 2bs7 by Molmil
Crystal structure of F17b-G in complex with chitobiose
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, F17BG LECTIN
Authors:Buts, L, Wellens, A, Van Molle, I, Wyns, L, Loris, R, Lahmann, M, Oscarson, S, De Greve, H, Bouckaert, J.
Deposit date:2005-05-18
Release date:2006-05-24
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Impact of Natural Variation in Bacterial F17G Adhesins on Crystallization Behaviour.
Acta Crystallogr.,Sect.D, 61, 2005
2BSB
DownloadVisualize
BU of 2bsb by Molmil
E. coli F17e-G lectin domain complex with N-acetylglucosamine
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, F17G ADHESIN SUBUNIT
Authors:Buts, L, Wellens, A, Van Molle, I, Wyns, L, Loris, R, Lahmann, M, Oscarson, S, De Greve, H, Bouckaert, J.
Deposit date:2005-05-20
Release date:2006-05-24
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Impact of Natural Variation in Bacterial F17G Adhesins on Crystallization Behaviour.
Acta Crystallogr.,Sect.D, 61, 2005
2D27
DownloadVisualize
BU of 2d27 by Molmil
Structure of the N-terminal domain of XpsE (crystal form I4122)
Descriptor: type II secretion ATPase XpsE
Authors:Chen, Y, Shiue, S.-J, Huang, C.-W, Chang, J.-L, Chien, Y.-L, Hu, N.-T, Chan, N.-L.
Deposit date:2005-09-03
Release date:2005-09-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Structure and Function of the XpsE N-Terminal Domain, an Essential Component of the Xanthomonas campestris Type II Secretion System
J.Biol.Chem., 280, 2005
6GED
DownloadVisualize
BU of 6ged by Molmil
Adhesin domain of PrgB from Enterococcus faecalis bound to DNA
Descriptor: 1,2-ETHANEDIOL, DNA (5'-D(P*CP*GP*GP*GP*CP*CP*GP*CP*CP*C)-3'), DNA (5'-D(P*GP*GP*GP*CP*GP*GP*CP*CP*CP*G)-3'), ...
Authors:Schmitt, A, Berntsson, R.P.A.
Deposit date:2018-04-26
Release date:2018-05-16
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.794 Å)
Cite:PrgB promotes aggregation, biofilm formation, and conjugation through DNA binding and compaction.
Mol. Microbiol., 109, 2018
2BCM
DownloadVisualize
BU of 2bcm by Molmil
DaaE adhesin
Descriptor: F1845 fimbrial protein
Authors:Le Trong, I, Stenkamp, R.E, Korotkova, N, Moseley, S.
Deposit date:2005-10-19
Release date:2005-11-01
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Crystal Structure and Mutational Analysis of the DaaE Adhesin of Escherichia coli.
J.Biol.Chem., 281, 2006
2D28
DownloadVisualize
BU of 2d28 by Molmil
Structure of the N-terminal domain of XpsE (crystal form P43212)
Descriptor: CACODYLATE ION, type II secretion ATPase XpsE
Authors:Chen, Y, Shiue, S.-J, Huang, C.-W, Chang, J.-L, Chien, Y.-L, Hu, N.-T, Chan, N.-L.
Deposit date:2005-09-03
Release date:2005-09-20
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure and Function of the XpsE N-Terminal Domain, an Essential Component of the Xanthomonas campestris Type II Secretion System
J.Biol.Chem., 280, 2005
3SNK
DownloadVisualize
BU of 3snk by Molmil
Crystal structure of a Response regulator CheY-like protein (mll6475) from MESORHIZOBIUM LOTI at 2.02 A resolution
Descriptor: Response regulator CheY-like protein, SULFATE ION
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2011-06-29
Release date:2011-07-20
Last modified:2023-02-01
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Crystal structure of a Response regulator CheY-like protein (mll6475) from MESORHIZOBIUM LOTI at 2.02 A resolution
To be published
5WW4
DownloadVisualize
BU of 5ww4 by Molmil
Crystal structure of the second DNA-Binding protein under starvation from Mycobacterium smegmatis soaked with iron in the ratio of 48 iron atoms per dodecamer
Descriptor: CHLORIDE ION, FE (II) ION, FE (III) ION, ...
Authors:Williams, S.M, Chatterji, D.
Deposit date:2016-12-31
Release date:2017-08-09
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Flexible aspartates propel iron to the ferroxidation sites along pathways stabilized by a conserved arginine in Dps proteins from Mycobacterium smegmatis
Metallomics, 9, 2017
5WW3
DownloadVisualize
BU of 5ww3 by Molmil
Crystal structure of the second DNA-Binding protein under starvation from Mycobacterium smegmatis soaked with iron in the ratio of 24 iron atoms per dodecamer
Descriptor: CHLORIDE ION, FE (II) ION, FE (III) ION, ...
Authors:Williams, S.M, Chatterji, D.
Deposit date:2016-12-31
Release date:2017-08-09
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Flexible aspartates propel iron to the ferroxidation sites along pathways stabilized by a conserved arginine in Dps proteins from Mycobacterium smegmatis
Metallomics, 9, 2017

225946

PDB entries from 2024-10-09

PDB statisticsPDBj update infoContact PDBjnumon