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3U21
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Crystal structure of a Fragment of Nuclear factor related to kappa-B-binding protein (residues 370-495) (NFRKB) from Homo sapiens at 2.18 A resolution
Descriptor: Nuclear factor related to kappa-B-binding protein, SODIUM ION
Authors:Joint Center for Structural Genomics (JCSG), Partnership for Stem Cell Biology, Partnership for Stem Cell Biology (STEMCELL)
Deposit date:2011-09-30
Release date:2011-11-02
Last modified:2023-02-01
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Structure of a Novel Winged-Helix Like Domain from Human NFRKB Protein.
Plos One, 7, 2012
3V4Q
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BU of 3v4q by Molmil
Structure of R335W mutant of human Lamin
Descriptor: Prelamin-A/C
Authors:Bollati, M, Bolognesi, M.
Deposit date:2011-12-15
Release date:2012-02-29
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.06 Å)
Cite:Structures of the lamin A/C R335W and E347K mutants: Implications for dilated cardiolaminopathies.
Biochem.Biophys.Res.Commun., 418, 2012
3V4W
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Structure of E347K mutant of Lamin
Descriptor: Prelamin-A/C
Authors:Bollati, M, Bolognesi, M.
Deposit date:2011-12-15
Release date:2012-02-22
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:Structures of the lamin A/C R335W and E347K mutants: Implications for dilated cardiolaminopathies.
Biochem.Biophys.Res.Commun., 418, 2012
4QG6
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BU of 4qg6 by Molmil
crystal structure of PKM2-Y105E mutant
Descriptor: PROLINE, Pyruvate kinase PKM
Authors:Wang, P, Sun, C, Zhu, T, Xu, Y.
Deposit date:2014-05-22
Release date:2015-02-25
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (3.207 Å)
Cite:Structural insight into mechanisms for dynamic regulation of PKM2.
Protein Cell, 6, 2015
3X1U
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BU of 3x1u by Molmil
Crystal structure of nucleosome core particle in the presence of histone variants involved in reprogramming
Descriptor: CHLORIDE ION, DNA (146-MER), Histone H2A, ...
Authors:Sivaraman, P, Kumarevel, T.S.
Deposit date:2014-11-28
Release date:2015-09-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:Structural and functional analyses of nucleosome complexes with mouse histone variants TH2a and TH2b, involved in reprogramming.
Biochem.Biophys.Res.Commun., 464, 2015
4N4F
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BU of 4n4f by Molmil
Crystal Structure of the Bromodomain-PHD Finger Module of Human Transcriptional Co-Activator CBP in complex with di-Acetylated Histone 4 Peptide (H412acK16ac).
Descriptor: CREB-binding protein, Histone 4 Peptide, ZINC ION
Authors:Plotnikov, A.N, Zhou, J, Zhou, M.-M.
Deposit date:2013-10-08
Release date:2014-02-19
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Structural Insights into Acetylated-Histone H4 Recognition by the Bromodomain-PHD Finger Module of Human Transcriptional Coactivator CBP.
Structure, 22, 2014
3W99
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BU of 3w99 by Molmil
Crystal Structure of Human Nucleosome Core Particle lacking H4 N-terminal region
Descriptor: 146-mer DNA, Histone H2A type 1-B/E, Histone H2B type 1-J, ...
Authors:Iwasaki, W, Miya, Y, Horikoshi, N, Osakabe, A, Tachiwana, H, Shibata, T, Kagawa, W, Kurumizaka, H.
Deposit date:2013-04-01
Release date:2013-08-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3 Å)
Cite:Contribution of histone N-terminal tails to the structure and stability of nucleosomes
FEBS Open Bio, 3, 2013
3X1S
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BU of 3x1s by Molmil
Crystal structure of the nucleosome core particle
Descriptor: CHLORIDE ION, DNA (146-MER), Histone H2A type 1-B/E, ...
Authors:Sivaraman, P, Kumarevel, T.S.
Deposit date:2014-11-27
Release date:2015-09-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.805 Å)
Cite:Structural and functional analyses of nucleosome complexes with mouse histone variants TH2a and TH2b, involved in reprogramming
Biochem.Biophys.Res.Commun., 464, 2015
4M38
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BU of 4m38 by Molmil
Crystal structure of Trypanosoma brucei protein arginine methyltransferase 7 complex with AdoHcy and histone H4 peptide
Descriptor: Histone H4, Protein arginine N-methyltransferase 7, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Wang, C, Zhu, Y, Shi, Y.
Deposit date:2013-08-06
Release date:2014-04-23
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural determinants for the strict monomethylation activity by trypanosoma brucei protein arginine methyltransferase 7.
Structure, 22, 2014
4QG8
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BU of 4qg8 by Molmil
crystal structure of PKM2-K305Q mutant
Descriptor: GLYCEROL, MAGNESIUM ION, MALONATE ION, ...
Authors:Wang, P, Sun, C, Zhu, T, Xu, Y.
Deposit date:2014-05-22
Release date:2015-02-25
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural insight into mechanisms for dynamic regulation of PKM2.
Protein Cell, 6, 2015
8JBX
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BU of 8jbx by Molmil
Human canonical 601 DNA nucleosome
Descriptor: DNA (147-MER), Histone H2A type 1-B/E, Histone H2B type 1-C/E/F/G/I, ...
Authors:Ding, D.B, Ishibashi, T, Nguyen, T.T.
Deposit date:2023-05-09
Release date:2024-05-15
Method:ELECTRON MICROSCOPY (3.35 Å)
Cite:Human canonical 601 DNA nucleosome
to be published
8JCD
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BU of 8jcd by Molmil
Human H2BFWTH100R nucleosome with 601 DNA
Descriptor: DNA (147-MER), Histone H2A type 1-B/E, Histone H2B type W-T, ...
Authors:Ding, D.B, Ishibashi, T, Nguyen, T.T.
Deposit date:2023-05-11
Release date:2024-05-15
Method:ELECTRON MICROSCOPY (3.14 Å)
Cite:Human H2BFWTH100R nucleosome with 601 DNA
to be published
2DNP
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BU of 2dnp by Molmil
Solution structure of RNA binding domain 2 in RNA-binding protein 14
Descriptor: RNA-binding protein 14
Authors:Kusuhara, M, Tsuda, K, Muto, Y, Inoue, M, Kigawa, T, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-04-26
Release date:2006-10-26
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of RNA binding domain 2 in RNA-binding protein 14
To be Published
2J0U
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BU of 2j0u by Molmil
The crystal structure of eIF4AIII-Barentsz complex at 3.0 A resolution
Descriptor: ATP-DEPENDENT RNA HELICASE DDX48, PROTEIN CASC3
Authors:Bono, F, Ebert, J, Lorentzen, E, Conti, E.
Deposit date:2006-08-04
Release date:2006-09-06
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:The Crystal Structure of the Exon Junction Complex Reveals How It Mantains a Stable Grip on Mrna
Cell(Cambridge,Mass.), 126, 2006
8K8D
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BU of 8k8d by Molmil
Crystal structure of C/EBPbeta BZIP domain bound to a high affinity DNA
Descriptor: CCAAT/enhancer-binding protein beta, DNA (5'-D(*CP*AP*TP*TP*AP*CP*GP*TP*AP*AP*TP*G)-3')
Authors:Min, J.R, Chen, S.Z, Liu, K.
Deposit date:2023-07-29
Release date:2024-03-06
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis for specific DNA sequence recognition by the transcription factor NFIL3.
J.Biol.Chem., 300, 2024
8JND
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BU of 8jnd by Molmil
The cryo-EM structure of the nonameric RAD51 ring bound to the nucleosome with the linker DNA binding
Descriptor: DNA (153-MER), DNA (156-MER), DNA repair protein RAD51 homolog 1, ...
Authors:Shioi, T, Hatazawa, S, Ogasawara, M, Takizawa, Y, Kurumizaka, H.
Deposit date:2023-06-06
Release date:2024-03-27
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (3.66 Å)
Cite:Cryo-EM structures of RAD51 assembled on nucleosomes containing a DSB site.
Nature, 628, 2024
8JNE
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BU of 8jne by Molmil
The cryo-EM structure of the decameric RAD51 ring bound to the nucleosome without the linker DNA binding
Descriptor: DNA (153-MER), DNA (156-MER), DNA repair protein RAD51 homolog 1, ...
Authors:Shioi, T, Hatazawa, S, Ogasawara, M, Takizawa, Y, Kurumizaka, H.
Deposit date:2023-06-06
Release date:2024-03-27
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (4.68 Å)
Cite:Cryo-EM structures of RAD51 assembled on nucleosomes containing a DSB site.
Nature, 628, 2024
8JNF
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BU of 8jnf by Molmil
The cryo-EM structure of the RAD51 filament bound to the nucleosome
Descriptor: DNA (153-MER), DNA (156-MER), DNA repair protein RAD51 homolog 1, ...
Authors:Shioi, T, Hatazawa, S, Ogasawara, M, Takizawa, Y, Kurumizaka, H.
Deposit date:2023-06-06
Release date:2024-03-27
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (6.91 Å)
Cite:Cryo-EM structures of RAD51 assembled on nucleosomes containing a DSB site.
Nature, 628, 2024
8KE7
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BU of 8ke7 by Molmil
Crystal structure of DNA binding and cleavage core of human topoisomerase 2-beta in a DNA binding-competent conformation
Descriptor: ACETATE ION, DNA topoisomerase 2-beta
Authors:Chan, N.L, Liu, K.T, Chen, S.F.
Deposit date:2023-08-11
Release date:2024-07-24
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural Basis for the Assembly of Type IIA Topoisomerase DNA Cleavage/Religation Center
To Be Published
8OX0
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BU of 8ox0 by Molmil
Structure of apo telomeric nucleosome
Descriptor: Histone H2A type 1-C, Histone H2B type 1-C/E/F/G/I, Histone H3.1, ...
Authors:Hu, H, van Roon, A.M.M, Ghanim, G.E, Ahsan, B, Oluwole, A, Peak-Chew, S, Robinson, C.V, Nguyen, T.H.D.
Deposit date:2023-04-28
Release date:2023-08-30
Last modified:2023-09-06
Method:ELECTRON MICROSCOPY (2.52 Å)
Cite:Structural basis of telomeric nucleosome recognition by shelterin factor TRF1.
Sci Adv, 9, 2023
8P4C
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BU of 8p4c by Molmil
Structural insights into human co-transcriptional capping - structure 3
Descriptor: DNA (32-MER), DNA (41-MER), DNA-directed RNA polymerase II subunit E, ...
Authors:Garg, G, Dienemann, C, Farnung, L, Schwarz, J, Linden, A, Urlaub, H, Cramer, P.
Deposit date:2023-05-20
Release date:2023-08-16
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structural insights into human co-transcriptional capping.
Mol.Cell, 83, 2023
8P4D
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BU of 8p4d by Molmil
Structural insights into human co-transcriptional capping - structure 4
Descriptor: DNA (32-MER), DNA (41-MER), DNA-directed RNA polymerase II subunit E, ...
Authors:Garg, G, Dienemann, C, Farnung, L, Schwarz, J, Linden, A, Urlaub, H, Cramer, P.
Deposit date:2023-05-20
Release date:2023-08-16
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural insights into human co-transcriptional capping.
Mol.Cell, 83, 2023
8OUE
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BU of 8oue by Molmil
The H/ACA RNP lobe of human telomerase with the dyskerin thumb loop in a semi-closed conformation
Descriptor: H/ACA ribonucleoprotein complex subunit 1, H/ACA ribonucleoprotein complex subunit 2, H/ACA ribonucleoprotein complex subunit 3, ...
Authors:Ghanim, G.E, Sekne, Z, van Roon, A.M.M, Balch, S, Nguyen, T.H.D.
Deposit date:2023-04-22
Release date:2024-01-31
Last modified:2024-02-07
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:2.7 angstrom cryo-EM structure of human telomerase H/ACA ribonucleoprotein.
Nat Commun, 15, 2024
8OUF
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BU of 8ouf by Molmil
The H/ACA RNP lobe of human telomerase with the dyskerin thumb loop in an open conformation
Descriptor: H/ACA ribonucleoprotein complex subunit 1, H/ACA ribonucleoprotein complex subunit 2, H/ACA ribonucleoprotein complex subunit 3, ...
Authors:Ghanim, G.E, Sekne, Z, van Roon, A.M.M, Balch, S, Nguyen, T.H.D.
Deposit date:2023-04-22
Release date:2024-01-31
Last modified:2024-02-07
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:2.7 angstrom cryo-EM structure of human telomerase H/ACA ribonucleoprotein.
Nat Commun, 15, 2024
2BF8
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BU of 2bf8 by Molmil
Crystal structure of SUMO modified ubiquitin conjugating enzyme E2- 25K
Descriptor: UBIQUITIN-CONJUGATING ENZYME E2-25 KDA, UBIQUITIN-LIKE PROTEIN SMT3C
Authors:Pichler, A, Knipscheer, P, Oberhofer, E, Van Dijk, W.J, Korner, R, Velgaard Olsen, J, Jentsch, S, Melchior, F, Sixma, T.K.
Deposit date:2004-12-06
Release date:2005-02-16
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Sumo Imodification of the Ubiquitin Conjugating Enzyme E2-25K
Nat.Struct.Mol.Biol., 12, 2005

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PDB entries from 2024-10-09

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