Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

2GQI
DownloadVisualize
BU of 2gqi by Molmil
Solution structure of the SH3 domain of human Ras GTPase-activating protein 1
Descriptor: Ras GTPase-activating protein 1
Authors:Kurosaki, C, Hayashi, F, Yoshida, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-04-21
Release date:2006-10-21
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the SH3 domain of human Ras GTPase-activating protein 1
To be Published
2GU8
DownloadVisualize
BU of 2gu8 by Molmil
Discovery of 2-Pyrimidyl-5-Amidothiophenes as Novel and Potent Inhibitors for AKT: Synthesis and SAR Studies
Descriptor: CAMP-dependent protein kinase, alpha-catalytic subunit, N-[(1S)-2-AMINO-1-(2,4-DICHLOROBENZYL)ETHYL]-5-[2-(METHYLAMINO)PYRIMIDIN-4-YL]THIOPHENE-2-CARBOXAMIDE, ...
Authors:Murray, J.M.
Deposit date:2006-04-28
Release date:2007-05-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Discovery of 2-pyrimidyl-5-amidothiophenes as potent inhibitors for AKT: synthesis and SAR studies
Bioorg.Med.Chem.Lett., 16, 2006
2GRZ
DownloadVisualize
BU of 2grz by Molmil
5ns Photoproduct of the M37V mutant of Scapharca HbI
Descriptor: CARBON MONOXIDE, Globin-1, PROTOPORPHYRIN IX CONTAINING FE
Authors:Knapp, J.E, Pahl, R, Srajer, V, Royer Jr, W.E.
Deposit date:2006-04-25
Release date:2006-05-09
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Allosteric action in real time: Time-resolved crystallographic studies of a cooperative dimeric hemoglobin.
Proc.Natl.Acad.Sci.Usa, 103, 2006
2GSB
DownloadVisualize
BU of 2gsb by Molmil
Solution structure of the second SH2 domain of human Ras GTPase-activating protein 1
Descriptor: Ras GTPase-activating protein 1
Authors:Kurosaki, C, Suetake, T, Yoshida, M, Hayashi, F, Yokoyma, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-04-26
Release date:2007-05-01
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the second SH2 domain of human Ras GTPase-activating protein 1
To be Published
2OVA
DownloadVisualize
BU of 2ova by Molmil
X-ray structure of Human Complement Protein C8gamma Y83W Mutant
Descriptor: Complement component 8, gamma polypeptide
Authors:Chiswell, B, Lovelace, L.L, Brannen, C, Ortlund, E.A, Lebioda, L, Sodetz, J.M.
Deposit date:2007-02-13
Release date:2007-05-22
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural features of the ligand binding site on human complement protein C8gamma: A member of the lipocalin family
Biochim.Biophys.Acta, 1774, 2007
2PE0
DownloadVisualize
BU of 2pe0 by Molmil
CRYSTAL STRUCTURE OF HUMAN PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1 (PDK1) 5-Hydroxy-3-[1-(1H-pyrrol-2-yl)-eth-(Z)-ylidene]-1,3-dihydro-indol-2-one COMPLEX
Descriptor: 3-phosphoinositide-dependent protein kinase 1, 5-HYDROXY-3-[(1R)-1-(1H-PYRROL-2-YL)ETHYL]-2H-INDOL-2-ONE, GLYCEROL, ...
Authors:Whitlow, M, Adler, M.
Deposit date:2007-04-01
Release date:2007-06-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Indolinone based phosphoinositide-dependent kinase-1 (PDK1) inhibitors. Part 1: Design, synthesis and biological activity.
Bioorg.Med.Chem.Lett., 17, 2007
2H4Q
DownloadVisualize
BU of 2h4q by Molmil
Crystal structure of a M-loop deletion variant of MENT in the cleaved conformation
Descriptor: Heterochromatin-associated protein MENT
Authors:Whisstock, J.C, Buckle, A.M, McGowan, S, Irving, J.A.
Deposit date:2006-05-25
Release date:2006-07-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:X-ray crystal structure of MENT: evidence for functional loop-sheet polymers in chromatin condensation.
Embo J., 25, 2006
2H5C
DownloadVisualize
BU of 2h5c by Molmil
0.82A resolution crystal structure of alpha-lytic protease at pH 5
Descriptor: ALPHA-LYTIC PROTEASE, GLYCEROL, SULFATE ION
Authors:Fuhrmann, C.N, Daugherty, M.D, Agard, D.A.
Deposit date:2006-05-25
Release date:2006-09-26
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (0.82 Å)
Cite:Subangstrom crystallography reveals that short ionic hydrogen bonds, and not a His-Asp low-barrier hydrogen bond, stabilize the transition state in serine protease catalysis
J.Am.Chem.Soc., 128, 2006
2OLK
DownloadVisualize
BU of 2olk by Molmil
ABC Protein ArtP in complex with ADP-beta-S
Descriptor: 5'-O-[(R)-HYDROXY(THIOPHOSPHONOOXY)PHOSPHORYL]ADENOSINE, Amino acid ABC transporter
Authors:Thaben, P.F, Eckey, V, Scheffel, F, Saenger, W, Schneider, E, Vahedi-Faridi, A.
Deposit date:2007-01-19
Release date:2008-01-15
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structures of the ATP-binding cassette (ABC) protein ArtP from Geobacillus stearothermophilus reveal a stable dimer in the post hydrolysis state and an asymmetry in the dimerization region
To be Published
2ORL
DownloadVisualize
BU of 2orl by Molmil
Solution structure of the cytochrome c- para-aminophenol adduct
Descriptor: 4-AMINOPHENOL, Cytochrome c iso-1, HEME C
Authors:Assfalg, M, Bertini, I, Del Conte, R, Giachetti, A, Turano, P.
Deposit date:2007-02-03
Release date:2007-04-24
Last modified:2021-10-20
Method:SOLUTION NMR
Cite:Cytochrome c and organic molecules: solution structure of the p-aminophenol adduct.
Biochemistry, 46, 2007
2H5Z
DownloadVisualize
BU of 2h5z by Molmil
Crystallographic structure of digestive lysozyme 1 from Musca domestica bound to chitotetraose at 1.92 A resolution
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Lysozyme 1
Authors:Valerio, A.A, Cancado, F.C, Marana, S.R, Barbosa, J.A.R.G.
Deposit date:2006-05-29
Release date:2007-06-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Crystallization, data collection and phasing of two digestive lysozymes from Musca domestica
Acta Crystallogr.,Sect.F, 62, 2006
2OMI
DownloadVisualize
BU of 2omi by Molmil
Structure of human insulin cocrystallized with protamine
Descriptor: CHLORIDE ION, Insulin A chain, Insulin B chain, ...
Authors:Norrman, M, Schluckebier, G.
Deposit date:2007-01-22
Release date:2007-03-27
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Structural characterization of insulin NPH formulations.
EUR.J.PHARM.SCI., 30, 2007
2H72
DownloadVisualize
BU of 2h72 by Molmil
Crystal Structure of Thioredoxin mutant E85D in Hexagonal (p61) Space Group
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Thioredoxin
Authors:Gavira, J.A, Godoy-Ruiz, R, Ibarra-Molero, B, Sanchez-Ruiz, J.M.
Deposit date:2006-06-01
Release date:2007-05-15
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal Structure of Thioredoxin mutant E85D in Hexagonal (p61) Space Group
To be Published
2H7R
DownloadVisualize
BU of 2h7r by Molmil
L244A mutant of Cytochrome P450cam complexed with imidazole
Descriptor: 1-METHYLIMIDAZOLE, Cytochrome P450-cam, PROTOPORPHYRIN IX CONTAINING FE
Authors:Verras, A, Alian, A, Montellano, P.R.
Deposit date:2006-06-02
Release date:2006-10-31
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Cytochrome P450 active site plasticity: attenuation of imidazole binding in cytochrome P450cam by an L244A mutation.
Protein Eng.Des.Sel., 19, 2006
2OP2
DownloadVisualize
BU of 2op2 by Molmil
Crystal structure of RNase double-mutant V43C R85C with extra disulphide bond
Descriptor: Ribonuclease pancreatic
Authors:Kurinov, I.
Deposit date:2007-01-26
Release date:2007-10-30
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Implementation of a k/k(0) Method to Identify Long-Range Structure in Transition States during Conformational Folding/Unfolding of Proteins.
Structure, 15, 2007
2H67
DownloadVisualize
BU of 2h67 by Molmil
NMR structure of human insulin mutant HIS-B5-ALA, HIS-B10-ASP PRO-B28-LYS, LYS-B29-PRO, 20 structures
Descriptor: Insulin A chain, Insulin B chain
Authors:Hua, Q.X, Liu, M, Hu, S.Q, Jia, W, Arvan, P, Weiss, M.A.
Deposit date:2006-05-30
Release date:2006-07-18
Last modified:2021-10-20
Method:SOLUTION NMR
Cite:A Conserved Histidine in Insulin Is Required for the Foldability of Human Proinsulin: Structure and function of an Alab5 analog.
J.Biol.Chem., 281, 2006
2NOT
DownloadVisualize
BU of 2not by Molmil
NOTECHIS II-5, NEUROTOXIC PHOSPHOLIPASE A2 FROM NOTECHIS SCUTATUS SCUTATUS
Descriptor: PHOSPHOLIPASE A2
Authors:Carredano, E, Westerlund, B, Persson, B, Saarinen, M, Ramaswamy, S, Eaker, D, Eklund, H.
Deposit date:1997-03-03
Release date:1997-06-16
Last modified:2018-04-04
Method:X-RAY DIFFRACTION (3 Å)
Cite:The three-dimensional structures of two toxins from snake venom throw light on the anticoagulant and neurotoxic sites of phospholipase A2.
Toxicon, 36, 1998
2H74
DownloadVisualize
BU of 2h74 by Molmil
Crystal Structure of Thioredoxin Mutant D2E in Hexagonal (p61) Space Group
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Thioredoxin
Authors:Gavira, J.A, Godoy-Ruiz, R, Ibarra-Molero, B, Sanchez-Ruiz, J.M.
Deposit date:2006-06-01
Release date:2007-05-15
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structure of Thioredoxin Mutant D2E in Hexagonal (p61) Space Group
To be Published
2HB4
DownloadVisualize
BU of 2hb4 by Molmil
Structure of HIV Protease NL4-3 in an Unliganded State
Descriptor: MAGNESIUM ION, Protease, R-1,2-PROPANEDIOL
Authors:Heaslet, H, Tam, K, Elder, J.H, Stout, C.D.
Deposit date:2006-06-13
Release date:2007-06-26
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Conformational flexibility in the flap domains of ligand-free HIV protease.
Acta Crystallogr.,Sect.D, 63, 2007
2IWR
DownloadVisualize
BU of 2iwr by Molmil
Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Descriptor: CENTAURIN GAMMA 1
Authors:Elkins, J.M, Soundararajan, M, Yang, X, Papagrigoriou, E, Sundstrom, M, Edwards, A, Arrowsmith, C, Weigelt, J, Doyle, D.A, Structural Genomics Consortium (SGC)
Deposit date:2006-07-03
Release date:2006-07-04
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The Centaurin Gamma-1 Gtpase-Like Domain Functions as an Ntpase.
Biochem.J., 401, 2007
2N9I
DownloadVisualize
BU of 2n9i by Molmil
Solution structure of reduced human cytochrome c
Descriptor: Cytochrome c, HEME C
Authors:Imai, M, Saio, T, Kumeta, H, Uchida, T, Inagaki, F, Ishimori, K.
Deposit date:2015-11-24
Release date:2016-02-17
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Investigation of the redox-dependent modulation of structure and dynamics in human cytochrome c
Biochem.Biophys.Res.Commun., 469, 2016
2NBR
DownloadVisualize
BU of 2nbr by Molmil
The Solution Structure of Human gammaC-crystallin
Descriptor: Gamma-crystallin C
Authors:Dixit, K, Pande, A, Pande, J, Sarma, S.P.
Deposit date:2016-03-12
Release date:2016-06-01
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Nuclear Magnetic Resonance Structure of a Major Lens Protein, Human gamma C-Crystallin: Role of the Dipole Moment in Protein Solubility.
Biochemistry, 55, 2016
2NAM
DownloadVisualize
BU of 2nam by Molmil
Full-length WT SOD1 in DPC MICELLE
Descriptor: Superoxide dismutase [Cu-Zn]
Authors:Lim, L, Song, J.
Deposit date:2016-01-06
Release date:2016-12-14
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:SALS-linked WT-SOD1 adopts a highly similar helical conformation as FALS-causing L126Z-SOD1 in a membrane environment
Biochim.Biophys.Acta, 1858, 2016
2J1M
DownloadVisualize
BU of 2j1m by Molmil
P450 BM3 Heme domain in complex with DMSO
Descriptor: CYTOCHROME P450 102, DIMETHYL SULFOXIDE, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Kuper, J, Tuck-Seng, W, Roccatano, D, Wilmanns, M, Schwaneberg, U.
Deposit date:2006-08-14
Release date:2007-05-15
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Understanding a Mechanism of Organic Cosolvent Inactivation in Heme Monooxygenase P450 Bm-3.
J.Am.Chem.Soc., 129, 2007
2NMY
DownloadVisualize
BU of 2nmy by Molmil
Crystal structure analysis of HIV-1 protease mutant V82A with a inhibitor saquinavir
Descriptor: (2S)-N-[(2S,3R)-4-[(2S,3S,4aS,8aS)-3-(tert-butylcarbamoyl)-3,4,4a,5,6,7,8,8a-octahydro-1H-isoquinolin-2-yl]-3-hydroxy-1 -phenyl-butan-2-yl]-2-(quinolin-2-ylcarbonylamino)butanediamide, CHLORIDE ION, PROTEASE, ...
Authors:Tie, Y, Kovalevsky, A.Y, Boross, P, Wang, Y.F, Ghosh, A.K, Tozser, J, Harrison, R.W, Weber, I.T.
Deposit date:2006-10-23
Release date:2007-03-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Atomic resolution crystal structures of HIV-1 protease and mutants V82A and I84V with saquinavir.
Proteins, 67, 2007

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon