PDB: 224931 resultsInfo pagesStatus searchChemie searchBIRD

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6M13	Crystal structure of Rnase L in complex with Toceranib Descriptor: 5-[(Z)-(5-fluoranyl-2-oxidanylidene-1H-indol-3-ylidene)methyl]-2,4-dimethyl-N-(2-pyrrolidin-1-ylethyl)-1H-pyrrole-3-carboxamide, PHOSPHATE ION, Ribonuclease L, ... Authors: Tang, J, Huang, H. Deposit date: 2020-02-24 Release date: 2020-09-02 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.56 Å) Cite: Sunitinib inhibits RNase L by destabilizing its active dimer conformation. Biochem.J., 477, 2020
6MXR	Crystal structure of the dimeric bH1-Fab variant [HC-Y33W,HC-D98M,HC-G99M] Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, SODIUM ION, ... Authors: Shi, R. Deposit date: 2018-10-31 Release date: 2019-07-31 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.04 Å) Cite: Binding symmetry and surface flexibility mediate antibody self-association. Mabs, 11, 2019
5YKD	Crystal structure of dihydropyrimidinase from Pseudomonas aeruginosa PAO1 at 2.17 angstrom resolution Descriptor: D-hydantoinase/dihydropyrimidinase, ZINC ION Authors: Huang, Y.H, Huang, C.Y. Deposit date: 2017-10-14 Release date: 2018-02-21 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.17 Å) Cite: Structural Basis for pH-Dependent Oligomerization of Dihydropyrimidinase fromPseudomonas aeruginosaPAO1. Bioinorg Chem Appl, 2018, 2018
6G7Z	Lariat-capping ribozyme with a shortened DP2 stem loop Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Lariat-capping ribozyme, MAGNESIUM ION Authors: Masquida, B, Meyer, M, Olieric, V. Deposit date: 2018-04-06 Release date: 2018-12-05 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (3.33595 Å) Cite: Conformational adaptation of UNCG loops upon crowding. Rna, 25, 2019
12E8	2E8 FAB FRAGMENT Descriptor: IGG1-KAPPA 2E8 FAB (HEAVY CHAIN), IGG1-KAPPA 2E8 FAB (LIGHT CHAIN) Authors: Rupp, B, Trakhanov, S. Deposit date: 1998-03-14 Release date: 1998-08-05 Last modified: 2023-08-02 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structure of a monoclonal 2E8 Fab antibody fragment specific for the low-density lipoprotein-receptor binding region of apolipoprotein E refined at 1.9 A. Acta Crystallogr.,Sect.D, null, 1999
5YRX	Crystal structure of a hypothetical protein Rv3716c from Mycobacterium tuberculosis Descriptor: 1,2-ETHANEDIOL, CADMIUM ION, Nucleoid-associated protein Rv3716c Authors: Deka, G, Gopalan, A, Prabhavathi, M, Savithri, H.S, Raja, A, Murthy, M.R.N. Deposit date: 2017-11-10 Release date: 2018-05-16 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structural and biophysical characterization of Rv3716c, a hypothetical protein from Mycobacterium tuberculosis Biochem. Biophys. Res. Commun., 495, 2018
1O66	Crystal structure of 3-methyl-2-oxobutanoate hydroxymethyltransferase Descriptor: 3-methyl-2-oxobutanoate hydroxymethyltransferase, GLYCEROL Authors: Structural GenomiX Deposit date: 2003-10-23 Release date: 2003-11-11 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Structural analysis of a set of proteins resulting from a bacterial genomics project Proteins, 60, 2005
6M12	Crystal Structure of Rnase L in complex with SU11652 Descriptor: 5-[(E)-(5-CHLORO-2-OXO-1,2-DIHYDRO-3H-INDOL-3-YLIDENE)METHYL]-N-[2-(DIETHYLAMINO)ETHYL]-2,4-DIMETHYL-1H-PYRROLE-3-CARBOXAMIDE, PHOSPHATE ION, Ribonuclease L, ... Authors: Tang, J, Huang, H. Deposit date: 2020-02-24 Release date: 2020-09-02 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Sunitinib inhibits RNase L by destabilizing its active dimer conformation. Biochem.J., 477, 2020
5YWG	Crystal structure of Arabidopsis thaliana HPPD complexed with Mesotrione Descriptor: 2-[(4-methylsulfonyl-2-nitro-phenyl)-oxidanyl-methylidene]cyclohexane-1,3-dione, 4-hydroxyphenylpyruvate dioxygenase, COBALT (II) ION Authors: Lin, H.Y, Yang, W.C. Deposit date: 2017-11-29 Release date: 2019-01-16 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.603 Å) Cite: Molecular insights into the mechanism of 4-hydroxyphenylpyruvate dioxygenase inhibition: enzyme kinetics, X-ray crystallography and computational simulations. FEBS J., 286, 2019
1O60	Crystal structure of KDO-8-phosphate synthase Descriptor: 2-dehydro-3-deoxyphosphooctonate aldolase Authors: Structural GenomiX Deposit date: 2003-10-23 Release date: 2003-11-11 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural analysis of a set of proteins resulting from a bacterial genomics project Proteins, 60, 2005
1O67	Crystal structure of an hypothetical protein Descriptor: Hypothetical protein yiiM Authors: Structural GenomiX Deposit date: 2003-10-23 Release date: 2003-11-11 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.54 Å) Cite: Structural analysis of a set of proteins resulting from a bacterial genomics project Proteins, 60, 2005
6MY4	Crystal structure of the dimeric bH1-Fab variant [HC-Y33W,HC-D98M,HC-G99M,LC-S30bR] Descriptor: 1,2-ETHANEDIOL, anti-VEGF-A Fab fragment bH1 heavy chain, anti-VEGF-A Fab fragment bH1 light chain Authors: Shi, R, Picard, M.-E, Manenda, M. Deposit date: 2018-11-01 Release date: 2019-07-31 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.69 Å) Cite: Binding symmetry and surface flexibility mediate antibody self-association. Mabs, 11, 2019
7S86	Crystal structure of hydrophobin SC16, C2221 Descriptor: 1,2-ETHANEDIOL, Hydrophobin, SODIUM ION Authors: Vergunst, K.L, Langelaan, D.N. Deposit date: 2021-09-17 Release date: 2021-12-29 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2 Å) Cite: The N-terminal tail of the hydrophobin SC16 is not required for rodlet formation Sci Rep, 12, 2022
6M11	Crystal structure of Rnase L in complex with Sunitinib Descriptor: 5'-O-MONOPHOSPHORYLADENYLYL(2'->5')ADENYLYL(2'->5')ADENOSINE, N-[2-(diethylamino)ethyl]-5-[(Z)-(5-fluoro-2-oxo-1,2-dihydro-3H-indol-3-ylidene)methyl]-2,4-dimethyl-1H-pyrrole-3-carbo xamide, PHOSPHATE ION, ... Authors: Tang, J, Huang, H. Deposit date: 2020-02-24 Release date: 2020-09-02 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.46 Å) Cite: Sunitinib inhibits RNase L by destabilizing its active dimer conformation. Biochem.J., 477, 2020
6F0D	Crystal structure of a llama VHH antibody BCD090-M2 against human ErbB3 in space group P1 with cadmium ions Descriptor: CADMIUM ION, VHH antibody BCD090-M2 Authors: Eliseev, I.E, Yudenko, A.N, Vysochinskaya, V.V, Svirina, A.A, Evstratyeva, A.V, Drozhzhachih, M.S, Krendeleva, E.A, Vladimirova, A.K, Nemankin, T.A, Ekimova, V.M, Ulitin, A.B, Lomovskaya, M.I, Yakovlev, P.A, Moiseenko, F.V, Chakchir, O.B. Deposit date: 2017-11-19 Release date: 2017-11-29 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.90000749 Å) Cite: Crystal structures of a llama VHH antibody BCD090-M2 targeting human ErbB3 receptor. F1000Res, 7, 2018
1O61	Crystal structure of a PLP-dependent enzyme with PLP Descriptor: ACETATE ION, PYRIDOXAL-5'-PHOSPHATE, aminotransferase Authors: Structural GenomiX Deposit date: 2003-10-23 Release date: 2003-11-11 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structural analysis of a set of proteins resulting from a bacterial genomics project Proteins, 60, 2005
1AM5	THE CRYSTAL STRUCTURE AND PROPOSED AMINO ACID SEQUENCE OF A PEPSIN FROM ATLANTIC COD (GADUS MORHUA) Descriptor: PEPSIN Authors: Karlsen, S, Hough, E, Olsen, R.L. Deposit date: 1997-06-23 Release date: 1997-12-24 Last modified: 2023-08-02 Method: X-RAY DIFFRACTION (2.16 Å) Cite: Structure and proposed amino-acid sequence of a pepsin from atlantic cod (Gadus morhua). Acta Crystallogr.,Sect.D, 54, 1998
5FUZ	Extending the half-life of a Fab fragment through generation of a humanised anti-Human Serum Albumin (HSA) Fv domain: an investigation into the correlation between affinity and serum half-life Descriptor: 645 FAB, HEAVY CHAIN, LIGHT CHAIN Authors: Adams, R, Ceska, T. Deposit date: 2016-02-01 Release date: 2016-06-29 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (2.68 Å) Cite: Extending the Half-Life of a Fab Fragment Through Generation of a Humanized Anti-Human Serum Albumin Fv Domain: An Investigation Into the Correlation between Affinity and Serum Half-Life. Mabs, 8, 2016
1N2Y	SOLUTION STRUCTURE OF SS-CYCLIZED CATESTATIN FRAGMENT FROM CHROMOGRANIN A Descriptor: CATESTATIN Authors: Preece, N.E, Nguyen, M, Mahata, M, Mahata, S.K, Mahapatra, N.R, Tsigelny, I, O'Connor, D.T. Deposit date: 2002-10-24 Release date: 2002-11-13 Last modified: 2022-02-23 Method: SOLUTION NMR Cite: Conformational preferences and activities of peptides from the catecholamine release-inhibitory (catestatin) region of chromogranin A Regul.Pept., 118, 2004
5YUN	Crystal structure of SSB complexed with myc Descriptor: 3,5,7-TRIHYDROXY-2-(3,4,5-TRIHYDROXYPHENYL)-4H-CHROMEN-4-ONE, Single-stranded DNA-binding protein Authors: Huang, Y.H, Huang, C.Y. Deposit date: 2017-11-22 Release date: 2018-10-10 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.67 Å) Cite: Crystal structure of SSB complexed with inhibitor myricetin. Biochem. Biophys. Res. Commun., 504, 2018
6EZW	Crystal structure of a llama VHH antibody BCD090-M2 against human ErbB3 in space group C2 Descriptor: VHH antibody BCD090-M2 Authors: Eliseev, I.E, Yudenko, A.N, Vysochinskaya, V.V, Svirina, A.A, Evstratyeva, A.V, Drozhzhachih, M.S, Krendeleva, E.A, Vladimirova, A.K, Nemankin, T.A, Ekimova, V.M, Ulitin, A.B, Lomovskaya, M.I, Yakovlev, P.A, Moiseenko, F.V, Chakchir, O.B. Deposit date: 2017-11-16 Release date: 2017-11-29 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.59842849 Å) Cite: Crystal structures of a llama VHH antibody BCD090-M2 targeting human ErbB3 receptor. F1000Res, 7, 2018
5VET	PHOSPHOLIPASE A2, RE-REFINEMENT OF THE PDB STRUCTURE 1JQ8 WITHOUT THE PUTATIVE COMPLEXED OLIGOPEPTIDE Descriptor: Phospholipase A2 VRV-PL-VIIIa Authors: Wlodawer, A, Dauter, Z, Minor, W, Stanfield, R, Porebski, P, Jaskolski, M, Pozharski, E, Weichenberger, C.X, Rupp, B. Deposit date: 2017-04-05 Release date: 2018-06-20 Last modified: 2022-04-13 Method: X-RAY DIFFRACTION (2 Å) Cite: Detect, correct, retract: How to manage incorrect structural models. FEBS J., 285, 2018
5ZCI	Crystal structure of apo form of Xylose reductase from Debaryomyces nepalensis Descriptor: Aldose reductase Authors: Manoj, N. Deposit date: 2018-02-17 Release date: 2018-11-07 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal structure of yeast xylose reductase in complex with a novel NADP-DTT adduct provides insights into substrate recognition and catalysis. FEBS J., 285, 2018
1O6D	Crystal structure of a hypothetical protein Descriptor: Hypothetical UPF0247 protein TM0844 Authors: Structural GenomiX Deposit date: 2003-11-03 Release date: 2003-11-25 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.66 Å) Cite: Structural analysis of a set of proteins resulting from a bacterial genomics project Proteins, 60, 2005
6JWV	Crystal structure of Plasmodium falciparum HPPK-DHPS A437G with STZ-DHP Descriptor: 2-AMINO-6-HYDROXYMETHYL-7,8-DIHYDRO-3H-PTERIDIN-4-ONE, 4-{[(2-amino-4-oxo-3,4,7,8-tetrahydropteridin-6-yl)methyl]amino}-N-(1,3-thiazol-2-yl)benzenesulfonamide, 7,8-dihydro-6-hydroxymethylpterin pyrophosphokinase-dihydropteroate synthase, ... Authors: Chitnumsub, P, Jaruwat, A, Yuthavong, Y. Deposit date: 2019-04-21 Release date: 2020-02-12 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.7 Å) Cite: The structure of Plasmodium falciparum hydroxymethyldihydropterin pyrophosphokinase-dihydropteroate synthase reveals the basis of sulfa resistance. Febs J., 287, 2020

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