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1XCZ
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Structure of DNA containing the beta-anomer of a carbocyclic abasic site
Descriptor: 5'-D(*CP*GP*TP*AP*CP*(DXD)P*CP*AP*TP*GP*C)-3', 5'-D(*GP*CP*AP*TP*GP*AP*GP*TP*AP*CP*G)-3'
Authors:de los Santos, C, El-khateeb, M, Rege, P, Tian, K, Johnson, F.
Deposit date:2004-09-03
Release date:2004-10-19
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Impact of the C1 configuration of abasic sites on DNA duplex structure
Biochemistry, 43, 2004
1XCE
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Helica Structure of DNA by Design: The T(GGGG)T Hexad Alignment
Descriptor: 5'-D(*GP*CP*GP*GP*TP*TP*GP*GP*AP*T)-3'
Authors:Webba da Silva, M.
Deposit date:2004-09-01
Release date:2005-02-08
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Experimental Demonstration of T:(G:G:G):T Hexad and T:A:A:T Tetrad Alignments within a DNA Quadruplex Stem
Biochemistry, 44, 2005
1XCY
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Structure of DNA containing the alpha-anomer of a carbocyclic abasic site
Descriptor: 5'-D(*CP*GP*TP*AP*CP*(DXD)P*CP*AP*TP*GP*C)-3', 5'-D(*GP*CP*AP*TP*GP*AP*GP*TP*AP*CP*G)-3'
Authors:de los Santos, C, El-khateeb, M, Rege, P, Tian, K, Johnson, F.
Deposit date:2004-09-03
Release date:2004-10-19
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Impact of the C1 configuration of abasic sites on DNA duplex structure
Biochemistry, 43, 2004
1YJ5
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BU of 1yj5 by Molmil
Molecular architecture of mammalian polynucleotide kinase, a DNA repair enzyme
Descriptor: 5' polynucleotide kinase-3' phosphatase FHA domain, 5' polynucleotide kinase-3' phosphatase catalytic domain, SULFATE ION
Authors:Bernstein, N.K, Williams, R.S, Rakovszky, M.L, Cui, D, Green, R, Karimi-Busheri, F, Mani, R.S, Galicia, S, Koch, C.A, Cass, C.E, Durocher, D, Weinfeld, M, Glover, J.N.M.
Deposit date:2005-01-13
Release date:2005-03-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The molecular architecture of the mammalian DNA repair enzyme, polynucleotide kinase.
Mol.Cell, 17, 2005
6Z5N
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BU of 6z5n by Molmil
DnaJB1 JD-GF
Descriptor: DnaJ homolog subfamily B member 1
Authors:Avraham-Abayev, M, London, N, Rosenzweig, R.
Deposit date:2020-05-27
Release date:2020-11-18
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:HSP40 proteins use class-specific regulation to drive HSP70 functional diversity.
Nature, 587, 2020
6O3O
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BU of 6o3o by Molmil
Structure of human DNAM-1 (CD226) bound to nectin-like protein-5 (necl-5)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CD226 antigen, ...
Authors:Deuss, F.A, Watson, G.M, Rossjohn, J, Berry, R.
Deposit date:2019-02-27
Release date:2019-07-10
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural basis for the recognition of nectin-like protein-5 by the human-activating immune receptor, DNAM-1.
J.Biol.Chem., 294, 2019
5MHD
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BU of 5mhd by Molmil
Biosynthetic engineered A22S-B3K-B31R human insulin monomer structure in water/acetonitrile solutions.
Descriptor: Insulin
Authors:Bocian, W, Kozerski, L, Bednarek, E, Sitkowski, J.
Deposit date:2016-11-24
Release date:2017-08-09
Last modified:2019-05-08
Method:SOLUTION NMR
Cite:Structure and pharmaceutical formulation development of a new long-acting recombinant human insulin analog studied by NMR and MS.
J Pharm Biomed Anal, 135, 2017
7P1S
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BU of 7p1s by Molmil
Structure of KDNase from Trichophyton Rubrum in complex with 2,3-didehydro-2,3-dideoxy-D-glycero-D-galacto-nonulosonic acid.
Descriptor: 2,6-anhydro-3-deoxy-D-glycero-D-galacto-non-2-enonic acid, Extracellular sialidase/neuraminidase, SODIUM ION
Authors:Gloster, T.M, McMahon, S.A.
Deposit date:2021-07-02
Release date:2021-10-20
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Kinetic and Structural Characterization of Sialidases (Kdnases) from Ascomycete Fungal Pathogens.
Acs Chem.Biol., 16, 2021
7P1F
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BU of 7p1f by Molmil
Structure of KDNase from Aspergillus terrerus in complex with 2,3-didehydro-2,3-dideoxy-D-glycero-D-galacto-nonulosonic acid.
Descriptor: 2,6-anhydro-3-deoxy-D-glycero-D-galacto-non-2-enonic acid, CALCIUM ION, GLYCEROL, ...
Authors:Gloster, T.M, McMahon, S.A.
Deposit date:2021-07-01
Release date:2021-10-20
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Kinetic and Structural Characterization of Sialidases (Kdnases) from Ascomycete Fungal Pathogens.
Acs Chem.Biol., 16, 2021
7P1E
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Structure of KDNase from Aspergillus Terrerus in complex with 2,3-difluoro-2-keto-3-deoxynononic acid
Descriptor: (2R,3R,4R,5R,6S)-2,3-bis(fluoranyl)-4,5-bis(oxidanyl)-6-[(1R,2R)-1,2,3-tris(oxidanyl)propyl]oxane-2-carboxylic acid, 3-deoxy-3-fluoro-D-erythro-alpha-L-manno-non-2-ulopyranosonic acid, CALCIUM ION, ...
Authors:Gloster, T.M, McMahon, S.A.
Deposit date:2021-07-01
Release date:2021-10-20
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Kinetic and Structural Characterization of Sialidases (Kdnases) from Ascomycete Fungal Pathogens.
Acs Chem.Biol., 16, 2021
7P1U
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BU of 7p1u by Molmil
Structure of KDNase from Trichophyton Rubrum in complex with 2-keto-3-deoxynononic acid
Descriptor: Extracellular sialidase/neuraminidase, GLYCEROL, deamino-alpha-neuraminic acid
Authors:Gloster, T.M, McMahon, S.A.
Deposit date:2021-07-02
Release date:2021-10-20
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (0.99 Å)
Cite:Kinetic and Structural Characterization of Sialidases (Kdnases) from Ascomycete Fungal Pathogens.
Acs Chem.Biol., 16, 2021
7P1Q
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BU of 7p1q by Molmil
Structure of KDNase from Trichophyton Rubrum in complex with 2-keto-3-deoxynononic acid
Descriptor: Extracellular sialidase/neuraminidase, GLYCEROL, deamino-alpha-neuraminic acid
Authors:Gloster, T.M, McMahon, S.A.
Deposit date:2021-07-02
Release date:2021-10-20
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (0.91 Å)
Cite:Kinetic and Structural Characterization of Sialidases (Kdnases) from Ascomycete Fungal Pathogens.
Acs Chem.Biol., 16, 2021
7P1B
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BU of 7p1b by Molmil
Apo structure of KDNase from Aspergillus Terrerus
Descriptor: Sialidase domain-containing protein
Authors:Gloster, T.M, McMahon, S.A.
Deposit date:2021-07-01
Release date:2021-10-20
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Kinetic and Structural Characterization of Sialidases (Kdnases) from Ascomycete Fungal Pathogens.
Acs Chem.Biol., 16, 2021
7P1R
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BU of 7p1r by Molmil
Structure of Trichophyton Rubrum KDNase in complex with 2,3-difluoro-KDN
Descriptor: 3-deoxy-3-fluoro-D-erythro-alpha-L-manno-non-2-ulopyranosonic acid, Extracellular sialidase/neuraminidase, PHOSPHATE ION, ...
Authors:Gloster, T.M, McMahon, S.A.
Deposit date:2021-07-02
Release date:2021-10-20
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Kinetic and Structural Characterization of Sialidases (Kdnases) from Ascomycete Fungal Pathogens.
Acs Chem.Biol., 16, 2021
7P1O
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BU of 7p1o by Molmil
Structure of KDNase from Aspergillus Terrerus in complex with 2-keto-3-deoxynononic acid
Descriptor: CHLORIDE ION, GLYCEROL, Sialidase domain-containing protein, ...
Authors:Gloster, T.M, McMahon, S.A.
Deposit date:2021-07-02
Release date:2021-10-20
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Kinetic and Structural Characterization of Sialidases (Kdnases) from Ascomycete Fungal Pathogens.
Acs Chem.Biol., 16, 2021
7P1D
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BU of 7p1d by Molmil
Structure of KDNase from Aspergillus Terrerus in complex with 2-keto-3-deoxynononic acid
Descriptor: CALCIUM ION, Sialidase domain-containing protein, deamino-alpha-neuraminic acid
Authors:Gloster, T.M, McMahon, S.A.
Deposit date:2021-07-01
Release date:2021-10-20
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Kinetic and Structural Characterization of Sialidases (Kdnases) from Ascomycete Fungal Pathogens.
Acs Chem.Biol., 16, 2021
7P1V
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BU of 7p1v by Molmil
Apo structure of KDNase from Trichophyton Rubrum
Descriptor: CALCIUM ION, Extracellular sialidase/neuraminidase, GLYCEROL
Authors:Gloster, T.M, McMahon, S.A.
Deposit date:2021-07-02
Release date:2021-10-20
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Kinetic and Structural Characterization of Sialidases (Kdnases) from Ascomycete Fungal Pathogens.
Acs Chem.Biol., 16, 2021
6W6G
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BU of 6w6g by Molmil
The Mycobacterium tuberculosis ClpB disaggregase hexamer structure in conformation I in the presence of DnaK chaperone and a model substrate
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Chaperone protein ClpB, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ...
Authors:Yin, Y, Li, H.
Deposit date:2020-03-16
Release date:2021-03-17
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural basis for aggregate dissolution and refolding by the Mycobacterium tuberculosis ClpB-DnaK bi-chaperone system.
Cell Rep, 35, 2021
6W6H
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BU of 6w6h by Molmil
The Mycobacterium tuberculosis ClpB disaggregase hexamer structure in conformation II in the presence of DnaK chaperone and a model substrate
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Chaperone protein ClpB, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ...
Authors:Yin, Y, Li, H.
Deposit date:2020-03-16
Release date:2021-05-26
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structural basis for aggregate dissolution and refolding by the Mycobacterium tuberculosis ClpB-DnaK bi-chaperone system.
Cell Rep, 35, 2021
6W6J
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BU of 6w6j by Molmil
The Mycobacterium tuberculosis ClpB disaggregase hexamer structure with a locally refined N-terminal domain in the presence of DnaK chaperone and a model substrate
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Chaperone protein ClpB, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ...
Authors:Yin, Y, Li, H.
Deposit date:2020-03-17
Release date:2021-05-26
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural basis for aggregate dissolution and refolding by the Mycobacterium tuberculosis ClpB-DnaK bi-chaperone system.
Cell Rep, 35, 2021
6W6I
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BU of 6w6i by Molmil
The Mycobacterium tuberculosis ClpB disaggregase hexamer structure in conformation T in the presence of DnaK chaperone and a model substrate
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Chaperone protein ClpB, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ...
Authors:Yin, Y, Li, H.
Deposit date:2020-03-17
Release date:2021-05-26
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structural basis for aggregate dissolution and refolding by the Mycobacterium tuberculosis ClpB-DnaK bi-chaperone system.
Cell Rep, 35, 2021
7KZU
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BU of 7kzu by Molmil
Quasi-intermediate state (Q) of a truncated Hsp70 DnaK fused with a substrate peptide
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Chaperone protein DnaK fused with substrate peptide,Chaperone protein DnaK fused with substrate peptide, GLYCEROL, ...
Authors:Wang, W, Hendrickson, W.A.
Deposit date:2020-12-10
Release date:2021-05-12
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Intermediates in allosteric equilibria of DnaK-ATP interactions with substrate peptides
Acta Crystallogr.,Sect.D, 77, 2021
1E0H
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BU of 1e0h by Molmil
Inhibitor Protein Im9 bound to its partner E9 DNase
Descriptor: IMMUNITY PROTEIN FOR COLICIN E9
Authors:Boetzel, R, Czisch, M, Kaptein, R, Hemmings, A.M, James, R, Kleanthous, C, Moore, G.R.
Deposit date:2000-03-28
Release date:2000-10-30
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:NMR investigation of the interaction of the inhibitor protein Im9 with its partner DNase.
Protein Sci., 9, 2000
4RTF
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BU of 4rtf by Molmil
Crystal structure of molecular chaperone DnaK from Mycobacterium tuberculosis H37Rv
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Chaperone protein DnaK, TETRAETHYLENE GLYCOL
Authors:Filippova, E.V, Minasov, G, Kiryukhina, O, Endres, M, Babnigg, G, Rubin, E, Sacchettini, J, Joachimiak, A, Anderson, W.F, Midwest Center for Structural Genomics (MCSG), Structures of Mtb Proteins Conferring Susceptibility to Known Mtb Inhibitors (MTBI)
Deposit date:2014-11-14
Release date:2014-12-10
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.77 Å)
Cite:Crystal structure of molecular chaperone DnaK from Mycobacterium tuberculosis H37Rv
To be Published
3AT5
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BU of 3at5 by Molmil
Side-necked turtle (Pleurodira, Chelonia, REPTILIA) hemoglobin: cDNA-derived primary structures and X-ray crystal structures of Hb A
Descriptor: AlphaA-globin, Beta-globin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Hasegawa, T, Shishikura, F, Kuwada, T.
Deposit date:2010-12-26
Release date:2011-04-20
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Side-necked turtle (Pleurodira, Chelonia, reptilia) hemoglobin: cDNA-derived primary structures and X-ray crystal structures of Hb A.
Iubmb Life, 63, 2011

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PDB entries from 2024-09-04

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