PDB: 47011 resultsInfo pagesStatus searchChemie searchBIRD

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4H5A	DNA octamer D (GTseGTACAC) partially crosslinked with platinum Descriptor: DNA (5'-D(*GP*(2ST)P*GP*GP*CP*CP*AP*C)-3'), PLATINUM (II) ION Authors: Zhang, W, Coronado, G, Huang, Z. Deposit date: 2012-09-18 Release date: 2012-10-03 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.42 Å) Cite: DNA octamer D (GTseGTACAC) partially crosslinked with platinum To be Published
3FL6	Influence of the incorporation of a cyclohexenyl nucleic acid (CeNA) residue onto the sequence d(GCGTGCG)/d(CGCACGC) Descriptor: 5'-D(*CP*GP*CP*AP*CP*GP*C)-3', 5'-D(*GP*CP*GP*(XTR)P*GP*CP*G)-3', COBALT HEXAMMINE(III) Authors: Robeyns, K, Herdewijn, P, Van Meervelt, L. Deposit date: 2008-12-18 Release date: 2009-12-29 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.17 Å) Cite: Direct observation of two cyclohexenyl (CeNA) ring conformations in duplex DNA. Artif DNA PNA XNA, 1, 2010
4AN8	Structure of Thermus thermophilus CasA (Cse1) Descriptor: ACETATE ION, CSE1 Authors: Sashital, D.G, Wiedenheft, B, Doudna, J.A. Deposit date: 2012-03-16 Release date: 2012-05-02 Last modified: 2012-06-20 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Mechanism of Foreign DNA Selection in a Bacterial Adaptive Immune System. Mol.Cell, 46, 2012
7D9K	DNA binding domain of human DNA Ligase IV - Wild type Descriptor: DNA ligase 4 Authors: Maddi, E.R, Raghavan, S.C, Natesh, R. Deposit date: 2020-10-13 Release date: 2021-02-24 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Hypomorphic mutations in human DNA ligase IV lead to compromised DNA binding efficiency, hydrophobicity and thermal stability. Protein Eng.Des.Sel., 34, 2021
7D9Y	DNA binding domain of human DNA Ligase IV mutant - A3V Descriptor: DNA ligase 4 Authors: Maddi, E.R, Raghavan, S.C, Natesh, R. Deposit date: 2020-10-14 Release date: 2021-02-24 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.76 Å) Cite: Hypomorphic mutations in human DNA ligase IV lead to compromised DNA binding efficiency, hydrophobicity and thermal stability. Protein Eng.Des.Sel., 34, 2021
5ZB2	Crystal structure of Rad7 and Elc1 complex in yeast Descriptor: 2-(2-METHOXYETHOXY)ETHANOL, 3,6,9,12,15,18,21,24,27,30,33,36,39,42,45,48,51,54,57-nonadecaoxanonapentacontane-1,59-diol, 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL, ... Authors: Jiang, T, Liu, L, Huo, Y. Deposit date: 2018-02-09 Release date: 2019-02-27 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (2.30000544 Å) Cite: Crystal structure of the yeast Rad7-Elc1 complex and assembly of the Rad7-Rad16-Elc1-Cul3 complex. DNA Repair (Amst.), 77, 2019
3GOD	Structural basis for DNase activity of a conserved protein implicated in CRISPR-mediated antiviral defense Descriptor: CALCIUM ION, Cas1, MANGANESE (II) ION, ... Authors: Wiedenheft, B. Deposit date: 2009-03-18 Release date: 2009-06-30 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (2.17 Å) Cite: Structural Basis for DNase Activity of a Conserved Protein Implicated in CRISPR-Mediated Genome Defense. Structure, 17, 2009
5VI0	Pseudomonas fluorescens alkylpurine DNA glycosylase AlkC bound to DNA containing an abasic site analog Descriptor: DNA (5'-D(*AP*AP*GP*AP*CP*TP*TP*GP*GP*AP*C)-3'), DNA (5'-D(*TP*GP*TP*CP*CP*AP*(3DR)P*GP*TP*CP*T)-3'), SODIUM ION, ... Authors: Shi, R, Eichman, B.F. Deposit date: 2017-04-13 Release date: 2017-10-25 Last modified: 2019-11-27 Method: X-RAY DIFFRACTION (2.396 Å) Cite: Selective base excision repair of DNA damage by the non-base-flipping DNA glycosylase AlkC. EMBO J., 37, 2018
6A5N	Crystal structure of Arabidopsis thaliana SUVH6 in complex with methylated DNA Descriptor: DNA (5'-D(*CP*AP*CP*TP*GP*CP*TP*GP*AP*GP*TP*AP*CP*T)-3'), DNA (5'-D(*GP*AP*GP*TP*AP*CP*TP*(5CM)P*AP*GP*CP*AP*GP*T)-3'), Histone-lysine N-methyltransferase, ... Authors: Li, X, Du, J. Deposit date: 2018-06-24 Release date: 2018-08-29 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Mechanistic insights into plant SUVH family H3K9 methyltransferases and their binding to context-biased non-CG DNA methylation. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
7E4E	NMR solution structures of DNA minidumbbell containing a N1-methyladenine Descriptor: DNA (5'-D(*TP*TP*TP*(MA7)P*TP*TP*TP*A)-3'), SODIUM ION Authors: Wan, L, Guo, P, Lam, S.L. Deposit date: 2021-02-11 Release date: 2021-04-07 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Effects of Adenine Methylation on the Structure and Thermodynamic Stability of a DNA Minidumbbell. Int J Mol Sci, 22, 2021
5Y7Q	Crystal structure of paFAN1 bound to 2nt 5'flap DNA with gap Descriptor: DNA (5'-D(*TP*TP*CP*AP*CP*AP*CP*AP*TP*TP*CP*AP*A)-3'), DNA (5'-D(P*GP*AP*AP*TP*GP*TP*GP*TP*GP*TP*CP*TP*CP*AP*AP*TP*CP*CP*CP*AP*AP*CP*TP*T)-3'), DNA (5'-D(P*GP*TP*TP*GP*GP*GP*AP*TP*TP*G)-3'), ... Authors: Jin, H, Cho, Y. Deposit date: 2017-08-17 Release date: 2018-03-14 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Structural mechanism of DNA interstrand cross-link unhooking by the bacterial FAN1 nuclease. J. Biol. Chem., 293, 2018
5Z6W	Crystal structure of paFAN1 bound to 2nt 5'flap DNA with gap with Manganese Descriptor: DNA (5'-D(P*AP*TP*TP*CP*AP*A)-3'), DNA (5'-D(P*GP*AP*AP*TP*GP*TP*GP*TP*CP*TP*CP*AP*AP*TP*CP*CP*CP*AP*AP*CP*TP*T)-3'), DNA (5'-D(P*GP*TP*TP*GP*GP*GP*AP*TP*TP*G)-3'), ... Authors: Jin, H, Cho, Y. Deposit date: 2018-01-25 Release date: 2018-03-14 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Structural mechanism of DNA interstrand cross-link unhooking by the bacterial FAN1 nuclease. J. Biol. Chem., 293, 2018
2KHO	NMR-RDC / XRAY structure of E. coli HSP70 (DNAK) chaperone (1-605) complexed with ADP and substrate Descriptor: Heat shock protein 70 Authors: Zuiderweg, E.R.P, Bertelsen, E.B. Deposit date: 2009-04-10 Release date: 2009-05-12 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution conformation of wild-type E. coli Hsp70 (DnaK) chaperone complexed with ADP and substrate. Proc.Natl.Acad.Sci.USA, 106, 2009
3JSL	Crystal structure of the adenylation domain of NAD+-dependent DNA ligase from Staphylococcus aureus Descriptor: DNA ligase, SULFATE ION Authors: Han, S, Chang, J.S, Griffor, M. Deposit date: 2009-09-10 Release date: 2009-12-15 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structure of the adenylation domain of NAD(+)-dependent DNA ligase from Staphylococcus aureus. Acta Crystallogr.,Sect.F, 65, 2009
3JSN	Crystal structure of the adenylation domain of NAD+-dependent DNA ligase from Staphylococcus aureus Descriptor: DNA ligase Authors: Han, S, Chang, J.S, Griffor, M. Deposit date: 2009-09-10 Release date: 2009-12-15 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structure of the adenylation domain of NAD(+)-dependent DNA ligase from Staphylococcus aureus. Acta Crystallogr.,Sect.F, 65, 2009
6WJK	Crystal Structure of a Self-Assembling DNA Crystal Scaffold with Rhombohedral Symmetry Descriptor: DNA (32-MER), DNA (5'-D(*TP*GP*GP*AP*AP*AP*CP*AP*GP*AP*CP*TP*GP*TP*CP*AP*GP*AP*TP*G)-3'), DNA (5'-D(P*AP*GP*CP*AP*TP*GP*A)-3'), ... Authors: Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H. Deposit date: 2020-04-13 Release date: 2021-02-24 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (4.514 Å) Cite: A Self-Assembled Rhombohedral DNA Crystal Scaffold with Tunable Cavity Sizes and High-Resolution Structural Detail. Angew.Chem.Int.Ed.Engl., 59, 2020
6UEF	Crystal Structure of a Self-Assembling DNA Scaffold Containing Sequence Modifications to Attempt to Disrupt Crystal Contacts in a Rhombohedral Lattice. Descriptor: DNA (5'-D(*CP*AP*AP*TP*GP*AP*CP*TP*CP*AP*TP*GP*CP*TP*CP*AP*TP*CP*GP*GP*A)-3'), DNA (5'-D(*TP*GP*TP*CP*CP*GP*AP*TP*G)-3'), DNA (5'-D(P*AP*GP*CP*AP*TP*GP*A)-3'), ... Authors: Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H. Deposit date: 2019-09-20 Release date: 2020-09-23 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.95 Å) Cite: A Self-Assembled Rhombohedral DNA Crystal Scaffold with Tunable Cavity Sizes and High-Resolution Structural Detail. Angew.Chem.Int.Ed.Engl., 59, 2020
8POP	HK97 small terminase in complex with DNA Descriptor: DNA (31-MER), Terminase small subunit Authors: Chechik, M, Greive, S.J, Antson, A.A, Jenkins, H.T. Deposit date: 2023-07-05 Release date: 2023-08-09 Last modified: 2024-08-21 Method: ELECTRON MICROSCOPY (3 Å) Cite: Structural basis for DNA recognition by a viral genome-packaging machine. Proc.Natl.Acad.Sci.USA, 121, 2024
7B72	DNA duplex with phosphoryl guanidine moiety, Rp-diastereomer Descriptor: DNA (5'-D(*CP*AP*CP*GP*CP*CP*GP*CP*TP*G)-3'), DNA (5'-D(*CP*AP*GP*CP*GP*GP*CP*GP*(RGT)P*G)-3') Authors: Lomzov, A.A, Pyshnyi, D.V, Shernuykov, A.V, Apukhtina, V.S. Deposit date: 2020-12-09 Release date: 2021-01-13 Last modified: 2023-08-23 Method: SOLUTION NMR Cite: DNA duplex with phosphoryl guanidine moiety, Rp-diastereomer To Be Published
9ASL	Human DNA polymerase theta helicase domain tetramer, apo-form Descriptor: DNA polymerase theta Authors: Ito, F, Li, Z, Chen, X.S. Deposit date: 2024-02-26 Release date: 2024-06-26 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Structural Basis for Pol theta-Helicase DNA Binding and Microhomology-Mediated End-Joining. Biorxiv, 2024
9ASK	Human DNA polymerase theta helicase domain dimer, apo-form Descriptor: DNA polymerase theta Authors: Ito, F, Li, Z, Chen, X.S. Deposit date: 2024-02-26 Release date: 2024-06-26 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Structural Basis for Pol theta-Helicase DNA Binding and Microhomology-Mediated End-Joining. Biorxiv, 2024
9ASJ	Human DNA polymerase theta helicase domain in complex with AMP-PNP, dimer form Descriptor: DNA polymerase theta, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER Authors: Ito, F, Li, Z, Chen, X.S. Deposit date: 2024-02-26 Release date: 2024-06-26 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Structural Basis for Pol theta-Helicase DNA Binding and Microhomology-Mediated End-Joining. Biorxiv, 2024
5BZ7	X-ray crystal structure of a continuously hydrogen bonded 14mer DNA lattice. Descriptor: DNA (5'-D(*GP*GP*AP*AP*AP*AP*TP*TP*TP*GP*GP*AP*GP*A)-3'), MAGNESIUM ION Authors: Saoji, M, Paukstelis, P.J. Deposit date: 2015-06-11 Release date: 2015-11-11 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.03 Å) Cite: Sequence-dependent structural changes in a self-assembling DNA oligonucleotide. Acta Crystallogr.,Sect.D, 71, 2015
6TZS	A DNA i-motif/duplex hybrid Descriptor: DNA (5'-D(*CP*CP*AP*GP*GP*CP*TP*GP*(CBR)P*AP*A)-3') Authors: Chu, B, Paukstelis, P.J. Deposit date: 2019-08-13 Release date: 2019-10-16 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.6 Å) Cite: A DNA G-quadruplex/i-motif hybrid. Nucleic Acids Res., 47, 2019
5BXW	X-ray crystal structure of a continuously hydrogen bonded 14mer DNA lattice. Descriptor: DNA (5'-D(*GP*GP*AP*AP*AP*GP*CP*TP*TP*GP*GP*AP*GP*A)-3'), MAGNESIUM ION Authors: Saoji, M, Paukstelis, P.J. Deposit date: 2015-06-09 Release date: 2015-11-11 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Sequence-dependent structural changes in a self-assembling DNA oligonucleotide. Acta Crystallogr.,Sect.D, 71, 2015

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