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285D	X-RAY AND SOLUTION STUDIES OF DNA OLIGOMERS AND IMPLICATIONS FOR THE STRUCTURAL BASIS OF A-TRACT-DEPENDENT CURVATURE Descriptor: DNA (5'-D(*CP*GP*CP*AP*IP*AP*TP*(5CM)P*TP*GP*CP*G)-3') Authors: Shatzky-Schwartz, M, Shakked, Z, Luisi, B.F. Deposit date: 1996-09-11 Release date: 1997-05-08 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.5 Å) Cite: X-ray and solution studies of DNA oligomers and implications for the structural basis of A-tract-dependent curvature. J.Mol.Biol., 267, 1997
286D	X-RAY AND SOLUTION STUDIES OF DNA OLIGOMERS AND IMPLICATIONS FOR THE STRUCTURAL BASIS OF A-TRACT-DEPENDENT CURVATURE Descriptor: DNA (5'-D(*CP*CP*IP*IP*IP*CP*CP*CP*GP*G)-3') Authors: Shatzky-Schwartz, M, Shakked, Z, Luisi, B.F. Deposit date: 1996-09-16 Release date: 1997-05-08 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.5 Å) Cite: X-ray and solution studies of DNA oligomers and implications for the structural basis of A-tract-dependent curvature. J.Mol.Biol., 267, 1997
2E0G	DnaA N-terminal domain Descriptor: Chromosomal replication initiator protein dnaA Authors: Abe, Y, Katayama, T, Ueda, T, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-10-07 Release date: 2007-05-01 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structure and Function of DnaA N-Terminal Domains: Specific Sites and Mechanisms in Inter-DnaA Interaction and in DnaB Helicase Loading on oriC To be Published
4ED6	Human DNA polymerase eta - DNA ternary complex: Reaction in the AT crystal at pH 6.7 for 15 hr, Sideway translocation Descriptor: DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*TP*A)-3'), DNA (5'-D(*CP*AP*TP*TP*AP*TP*GP*AP*CP*GP*CP*T)-3'), DNA polymerase eta, ... Authors: Nakamura, T, Zhao, Y, Yang, W. Deposit date: 2012-03-27 Release date: 2012-07-11 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.211 Å) Cite: Watching DNA polymerase eta make a phosphodiester bond Nature, 487, 2012
2ZJT	Crystal structure of dna gyrase B' domain sheds lights on the mechanism for T-segment navigation Descriptor: DNA gyrase subunit B Authors: Fu, G.S, Zhu, D.Y, Hu, Y.L, Wang, D.C. Deposit date: 2008-03-10 Release date: 2009-03-10 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Crystal structure of DNA gyrase B' domain sheds lights on the mechanism for T-segment navigation Nucleic Acids Res., 37, 2009
2PV0	DNA methyltransferase 3 like protein (DNMT3L) Descriptor: DNA (cytosine-5)-methyltransferase 3-like, ZINC ION Authors: Cheng, X. Deposit date: 2007-05-09 Release date: 2007-08-14 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (3.3 Å) Cite: DNMT3L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNA. Nature, 448, 2007
4C2T	Crystal structure of full length Deinococcus radiodurans UvrD in complex with DNA Descriptor: DNA HELICASE II, DNA STRAND FOR28, DNA STRAND REV28, ... Authors: Stelter, M, Acajjaoui, S, McSweeney, S, Timmins, J. Deposit date: 2013-08-20 Release date: 2013-10-30 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (3.997 Å) Cite: Structural and Mechanistic Insight Into DNA Unwinding by Deinococcus Radiodurans Uvrd. Plos One, 8, 2013
3JX7	Bacillus cereus alkylpurine DNA glycosylase AlkD bound to DNA containing a 3-METHYLADENINE analog Descriptor: DNA (5'-D(*CP*CP*CP*GP*TP*TP*AP*GP*TP*CP*CP*G)-3'), DNA (5'-D(*CP*GP*GP*AP*CP*TP*(DZM)P*AP*CP*GP*GP*G)-3'), alkylpurine DNA glycosylase AlkD Authors: Rubinson, E.H, Eichman, B.F. Deposit date: 2009-09-18 Release date: 2010-09-22 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.6 Å) Cite: An unprecedented nucleic acid capture mechanism for excision of DNA damage. Nature, 468, 2010
4ZT0	Crystal structure of catalytically-active Streptococcus pyogenes Cas9 in complex with single-guide RNA at 2.9 Angstrom resolution Descriptor: CRISPR-associated endonuclease Cas9, single-guide RNA Authors: Jiang, F, Doudna, J.A. Deposit date: 2015-05-14 Release date: 2015-07-08 Method: X-RAY DIFFRACTION (2.9 Å) Cite: A Cas9-guide RNA complex preorganized for target DNA recognition. Science, 348, 2015
4C30	Crystal structure of Deinococcus radiodurans UvrD in complex with DNA, form 2 Descriptor: DNA HELICASE II, DNA STRAND FOR25, DNA STRAND REV25, ... Authors: Stelter, M, Acajjaoui, S, McSweeney, S, Timmins, J. Deposit date: 2013-08-21 Release date: 2013-10-30 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (3 Å) Cite: Structural and Mechanistic Insight Into DNA Unwinding by Deinococcus Radiodurans Uvrd. Plos One, 8, 2013
5BT2	MeCP2 MBD domain (A140V) in complex with methylated DNA Descriptor: DNA (5'-D(*AP*TP*AP*GP*AP*AP*GP*AP*AP*TP*TP*CP*(5CM)P*GP*TP*TP*CP*CP*AP*G)-3'), DNA (5'-D(*TP*CP*TP*GP*GP*AP*AP*(5CM)P*GP*GP*AP*AP*TP*TP*CP*TP*TP*CP*TP*A)-3'), Methyl-CpG-binding protein 2 Authors: Ho, K.L, Chia, J.Y, Tan, W.S, Ng, C.L, Hu, N.J, Foo, H.L. Deposit date: 2015-06-02 Release date: 2016-08-17 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.2 Å) Cite: A/T Run Geometry of B-form DNA Is Independent of Bound Methyl-CpG Binding Domain, Cytosine Methylation and Flanking Sequence. Sci Rep, 6, 2016
3RHI	DNA-binding protein HU from Bacillus anthracis Descriptor: DNA-binding protein HU Authors: Osipiuk, J, Makowska-Grzyska, M, Hasseman, J, Anderson, W.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID) Deposit date: 2011-04-11 Release date: 2011-04-20 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.48 Å) Cite: DNA-binding protein HU from Bacillus anthracis. To be Published
1Z8S	DnaB binding domain of DnaG (P16) from Bacillus stearothermophilus (residues 452-597) Descriptor: DNA primase Authors: Syson, K, Thirlway, J, Hounslow, A.M, Soultanas, P, Waltho, J.P. Deposit date: 2005-03-31 Release date: 2005-10-04 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of the helicase-interaction domain of the primase DnaG: a model for helicase activation Structure, 13, 2005
1EUI	ESCHERICHIA COLI URACIL-DNA GLYCOSYLASE COMPLEX WITH URACIL-DNA GLYCOSYLASE INHIBITOR PROTEIN Descriptor: URACIL-DNA GLYCOSYLASE, URACIL-DNA GLYCOSYLASE INHIBITOR PROTEIN Authors: Ravishankar, R, Sagar, M.B, Roy, S, Purnapatre, K, Handa, P, Varshney, U, Vijayan, M. Deposit date: 1998-06-18 Release date: 1999-06-22 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (3.2 Å) Cite: X-ray analysis of a complex of Escherichia coli uracil DNA glycosylase (EcUDG) with a proteinaceous inhibitor. The structure elucidation of a prokaryotic UDG. Nucleic Acids Res., 26, 1998
3NIC	DNA binding and cleavage by the GIY-YIG endonuclease R.Eco29kI inactive variant Y49F Descriptor: DNA (5'-D(P*CP*GP*GP*GP*AP*GP*GP*CP*CP*CP*GP*CP*GP*GP*GP*CP*CP*GP*CP*CP*GP*C)-3'), DNA (5'-D(P*GP*CP*GP*GP*CP*GP*GP*CP*CP*CP*GP*CP*GP*GP*GP*CP*CP*TP*CP*CP*CP*G)-3'), Eco29kIR, ... Authors: Mak, A.N.S, Lambert, A.R, Stoddard, B.L. Deposit date: 2010-06-15 Release date: 2010-09-08 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Folding, DNA Recognition, and Function of GIY-YIG Endonucleases: Crystal Structures of R.Eco29kI. Structure, 18, 2010
1DRR	DNA/RNA HYBRID DUPLEX CONTAINING A PURINE-RICH DNA STRAND, NMR, 10 STRUCTURES Descriptor: DNA (5'-D(*GP*AP*AP*GP*AP*GP*AP*AP*GP*C)-3'), RNA (5'-R(*GP*CP*UP*UP*CP*UP*CP*UP*UP*C)-3') Authors: Gyi, J.I, Lane, A.N, Conn, G.L, Brown, T. Deposit date: 1997-10-21 Release date: 1998-04-22 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structures of DNA.RNA hybrids with purine-rich and pyrimidine-rich strands: comparison with the homologous DNA and RNA duplexes. Biochemistry, 37, 1998
1Q32	Crystal Structure Analysis of the Yeast Tyrosyl-DNA Phosphodiesterase Descriptor: tyrosyl-DNA phosphodiesterase Authors: He, X, Babaoglu, K, Price, A, Nitiss, K.C, Nitiss, J.L, White, S.W. Deposit date: 2003-07-28 Release date: 2004-09-07 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.03 Å) Cite: Mutation of a conserved active site residue converts tyrosyl-DNA phosphodiesterase I into a DNA topoisomerase I-dependent poison J.Mol.Biol., 372, 2007
4C2U	Crystal structure of Deinococcus radiodurans UvrD in complex with DNA, Form 1 Descriptor: DNA HELICASE II, FOR25, GLYCEROL, ... Authors: Stelter, M, Acajjaoui, S, McSweeney, S, Timmins, J. Deposit date: 2013-08-20 Release date: 2013-10-30 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.55 Å) Cite: Structural and Mechanistic Insight Into DNA Unwinding by Deinococcus Radiodurans Uvrd. Plos One, 8, 2013
479D	CRYSTAL STRUCTURE A DNA:RNA HYBRID DUPLEX, A DYNAMIC MODEL FOR RNASE H RECOGNITION Descriptor: DNA (5'-D(*CP*TP*CP*TP*TP*CP*TP*TP*C)-3'), RNA (5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*G)-3') Authors: Xiong, Y, Sundaralingam, M. Deposit date: 1999-07-08 Release date: 2000-05-15 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Crystal structure of a DNA.RNA hybrid duplex with a polypurine RNA r(gaagaagag) and a complementary polypyrimidine DNA d(CTCTTCTTC). Nucleic Acids Res., 28, 2000
1EFS	CONFORMATION OF A DNA-RNA HYBRID Descriptor: DNA (5'-D(*GP*AP*GP*AP*GP*GP*AP*AP*GP*AP*GP*AP*A)-3'), RNA (5'-R(*UP*UP*CP*UP*CP*UP*UP*CP*CP*UP*CP*UP*C)-3') Authors: Larue, V, Hantz, E. Deposit date: 2000-02-10 Release date: 2000-03-06 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Solution conformation of an RNA--DNA hybrid duplex containing a pyrimidine RNA strand and a purine DNA strand. Int.J.Biol.Macromol., 28, 2001
4ZT9	Nuclease-inactive Streptococcus pyogenes Cas9 (D10A/H840A, dCas9) in complex with single-guide RNA at 3.1 Angstrom resolution Descriptor: CRISPR-associated endonuclease Cas9, single-guide RNA Authors: Jiang, F, Doudna, J.A. Deposit date: 2015-05-14 Release date: 2015-07-08 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (3.1 Å) Cite: A Cas9-guide RNA complex preorganized for target DNA recognition. Science, 348, 2015
2VOA	Structure of an AP Endonuclease from Archaeoglobus fulgidus Descriptor: 5'-D(*CP*GP*GP*CP*TP*AP*CP*CP*GP*CP)-3', 5'-D(*GP*CP*GP*GP*TP*AP*GP*CP*CP*GP)-3', EXODEOXYRIBONUCLEASE III Authors: Kuettner, E.B, Schmiedel, R, Greiner-Stoffele, T, Strater, N. Deposit date: 2008-02-11 Release date: 2008-12-09 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Structure and Function of the Abasic Site Specificity Pocket of an Ap Endonuclease from Archaeoglobus Fulgidus. DNA Repair, 8, 2009
1UGI	URACIL-DNA GLYCOSYLASE INHIBITOR PROTEIN Descriptor: IMIDAZOLE, SULFATE ION, URACIL-DNA GLYCOSYLASE INHIBITOR Authors: Putnam, C.D, Arvai, A.S, Mol, C.D, Tainer, J.A. Deposit date: 1998-11-04 Release date: 1999-03-25 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Protein mimicry of DNA from crystal structures of the uracil-DNA glycosylase inhibitor protein and its complex with Escherichia coli uracil-DNA glycosylase J.Mol.Biol., 287, 1999
3OQG	Restriction endonuclease HPY188I in complex with substrate DNA Descriptor: CHLORIDE ION, DNA 5'-D(*GP*AP*TP*CP*TP*GP*AP*AP*C)-3', DNA 5'-D(*GP*TP*TP*CP*AP*GP*AP*TP*C)-3', ... Authors: Sokolowska, M, Czapinska, H, Bochtler, M. Deposit date: 2010-09-03 Release date: 2010-10-20 Last modified: 2017-11-08 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Hpy188I-DNA pre- and post-cleavage complexes--snapshots of the GIY-YIG nuclease mediated catalysis. Nucleic Acids Res., 39, 2011
5W7O	2-Se-T4-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutant Descriptor: DNA (5'-D(*AP*TP*GP*(US3)P*CP*G)-3'), MAGNESIUM ION, RNA (5'-R(*UP*CP*GP*AP*CP*A)-3'), ... Authors: Fang, Z, Yang, F, Huang, Z. Deposit date: 2017-06-20 Release date: 2017-06-28 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.75 Å) Cite: 2-Se-T-modified-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutant To Be Published

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