PDB: 72960 resultsInfo pagesStatus searchChemie searchBIRD

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4XGT	Structure of RNA Helicase FRH a Critical Component of the Neurospora Crassa Circadian Clock Descriptor: FRQ-interacting RNA helicase Authors: Conrad, K.S, Crane, B.C. Deposit date: 2015-01-02 Release date: 2016-07-06 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (3.09 Å) Cite: Structure of the frequency-interacting RNA helicase: a protein interaction hub for the circadian clock. Embo J., 35, 2016
1NB7	HC-J4 RNA polymerase complexed with short RNA template strand Descriptor: 5'-R(*UP*UP*UP*U)-3', MANGANESE (II) ION, polyprotein Authors: O'Farrell, D.J, Trowbridge, R, Rowlands, D.J, Jaeger, J. Deposit date: 2002-12-02 Release date: 2003-03-25 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Substrate complexes of hepatitis C virus RNA polymerase (HC-J4): structural evidence for nucleotide import and de-novo initiation. J.Mol.Biol., 326, 2003
4Q9Q	Crystal structure of an RNA aptamer bound to bromo-ligand analog in complex with Fab Descriptor: (5Z)-5-(3-bromobenzylidene)-2,3-dimethyl-3,5-dihydro-4H-imidazol-4-one, Fab BL3-6, HEAVY CHAIN, ... Authors: Huang, H, Suslov, N.B, Li, N.-S, Shelke, S.A, Evans, M.E, Koldobskaya, Y, Rice, P.A, Piccirilli, J.A. Deposit date: 2014-05-01 Release date: 2014-06-18 Last modified: 2017-07-26 Method: X-RAY DIFFRACTION (2.45 Å) Cite: A G-quadruplex-containing RNA activates fluorescence in a GFP-like fluorophore. Nat.Chem.Biol., 10, 2014
4I68	Crystal structure of the R444A / R449A double mutant of the HERA RNA helicase RRM domain Descriptor: CHLORIDE ION, Heat resistant RNA dependent ATPase, ZINC ION Authors: Rudolph, M.G, Klostermeier, D. Deposit date: 2012-11-29 Release date: 2013-04-24 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.63 Å) Cite: Recognition of two distinct elements in the RNA substrate by the RNA-binding domain of the T. thermophilus DEAD box helicase Hera. Nucleic Acids Res., 41, 2013
3NS6	Crystal structure of hte RNA recognition motif of yeast eIF3b residues 76-170 Descriptor: Eukaryotic translation initiation factor 3 subunit B, SULFATE ION Authors: Khoshnevis, S, Neumann, P, Ficner, R. Deposit date: 2010-07-01 Release date: 2010-10-06 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.25 Å) Cite: Crystal structure of the RNA recognition motif of yeast translation initiation factor eIF3b reveals differences to human eIF3b. Plos One, 5, 2010
3NS5	Crystal structure of the RNA recognition motif of yeast eIF3b residues 76-161 Descriptor: Eukaryotic translation initiation factor 3 subunit B Authors: Khoshnevis, S, Neumann, P, Ficner, R. Deposit date: 2010-07-01 Release date: 2010-10-06 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.598 Å) Cite: Crystal structure of the RNA recognition motif of yeast translation initiation factor eIF3b reveals differences to human eIF3b. Plos One, 5, 2010
4QU6	Crystal structure of a G-rich RNA sequence binding factor 1 (GRSF1) from Homo sapiens at 1.75 A resolution Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, CHLORIDE ION, ... Authors: Joint Center for Structural Genomics (JCSG), Partnership for T-Cell Biology (TCELL) Deposit date: 2014-07-10 Release date: 2014-08-13 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Crystal structure of a G-rich RNA sequence binding factor 1 (GRSF1) from Homo sapiens at 1.75 A resolution To be published
4IEG	Structure and interactions of the RNA-dependent RNA polymerase from bacteriophage phi12 (P1 crystal form) Descriptor: MAGNESIUM ION, RNA-dependent RNA polymerase P2 Authors: Ren, Z, Franklin, M.C, Ghose, R. Deposit date: 2012-12-13 Release date: 2013-07-24 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structure of the RNA-directed RNA Polymerase from the cystovirus 12. Proteins, 81, 2013
4I69	Crystal structure of the K463A mutant of the RRM domain of RNA helicase HERA from T. thermophilus Descriptor: CHLORIDE ION, Heat resistant RNA dependent ATPase Authors: Rudolph, M.G, Klostermeier, D. Deposit date: 2012-11-29 Release date: 2013-04-24 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.79 Å) Cite: Recognition of two distinct elements in the RNA substrate by the RNA-binding domain of the T. thermophilus DEAD box helicase Hera. Nucleic Acids Res., 41, 2013
4GZK	Structure and interactions of the RNA-dependent RNA polymerase from bacteriophage phi12 Descriptor: FORMIC ACID, MAGNESIUM ION, RNA-dependent RNA polymerase P2 Authors: Ren, Z, Franklin, M, Ghose, R. Deposit date: 2012-09-06 Release date: 2013-07-24 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.69 Å) Cite: Structure of the RNA-directed RNA Polymerase from the cystovirus 12. Proteins, 81, 2013
5DZR	Structure of RNA Helicase FRH a Critical Component of the Neurospora Crassa Circadian Clock Descriptor: FRQ-interacting RNA helicase Authors: Conrad, K.S, Crane, B.C. Deposit date: 2015-09-26 Release date: 2016-07-06 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (3.161 Å) Cite: Structure of the frequency-interacting RNA helicase: a protein interaction hub for the circadian clock. Embo J., 35, 2016
1DG1	WHOLE, UNMODIFIED, EF-TU(ELONGATION FACTOR TU). Descriptor: ELONGATION FACTOR TU, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION Authors: Abel, K, Yoder, M, Hilgenfeld, R, Jurnak, F. Deposit date: 1999-11-22 Release date: 1999-12-01 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.5 Å) Cite: An alpha to beta conformational switch in EF-Tu. Structure, 4, 1996
4JKR	Crystal Structure of E. coli RNA Polymerase in complex with ppGpp Descriptor: DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA', DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... Authors: Zuo, Y, Wang, Y, Steitz, T.A. Deposit date: 2013-03-11 Release date: 2013-05-15 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (4.2 Å) Cite: The mechanism of E. coli RNA polymerase regulation by ppGpp is suggested by the structure of their complex. Mol.Cell, 50, 2013
1QC0	CRYSTAL STRUCTURE OF A 19 BASE PAIR COPY CONTROL RELATED RNA DUPLEX Descriptor: 5'-R(*GP*CP*AP*CP*CP*GP*CP*UP*AP*CP*CP*AP*AP*CP*GP*GP*UP*GP*C)-3', 5'-R(*GP*CP*AP*CP*CP*GP*UP*UP*GP*GP*UP*AP*GP*CP*GP*GP*UP*GP*C)-3', 5'-R(*UP*AP*GP*CP*GP*GP*UP*GP*C)-3', ... Authors: Klosterman, P.S, Shah, S.A, Steitz, T.A. Deposit date: 1999-05-17 Release date: 1999-11-11 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Crystal structures of two plasmid copy control related RNA duplexes: An 18 base pair duplex at 1.20 A resolution and a 19 base pair duplex at 1.55 A resolution. Biochemistry, 38, 1999
6ZWX	Crystal structure of E. coli RNA helicase HrpA Descriptor: ATP-dependent RNA helicase HrpA Authors: Grass, L.M, Wollenhaupt, J, Barthel, T, Loll, B, Wahl, M.C. Deposit date: 2020-07-29 Release date: 2021-06-30 Last modified: 2021-08-04 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Large-scale ratcheting in a bacterial DEAH/RHA-type RNA helicase that modulates antibiotics susceptibility. Proc.Natl.Acad.Sci.USA, 118, 2021
1ST4	Structure of DcpS bound to m7GpppA Descriptor: P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE, YTTRIUM (III) ION, mRNA decapping enzyme Authors: Gu, M, Fabrega, C, Liu, S.W, Liu, H, Kiledjian, M, Lima, C.D. Deposit date: 2004-03-24 Release date: 2004-04-13 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.02 Å) Cite: Insights into the structure, mechanism, and regulation of scavenger mRNA decapping activity Mol.Cell, 14, 2004
1OS5	Crystal structure of HCV NS5B RNA polymerase complexed with a novel non-competitive inhibitor. Descriptor: 3-(4-AMINO-2-TERT-BUTYL-5-METHYL-PHENYLSULFANYL)-6-CYCLOPENTYL-4-HYDROXY-6-[2-(4-HYDROXY-PHENYL)-ETHYL]-5,6-DIHYDRO-PYRAN-2-ONE, Hepatitis C virus NS5B RNA polymerase Authors: Love, R.A, Parge, H.E, Yu, X, Hickey, M.J, Diehl, W, Gao, J, Wriggers, H, Ekker, A, Wang, L, Thomson, J.A, Dragovich, P.S, Fuhrman, S.A. Deposit date: 2003-03-18 Release date: 2004-03-18 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Crystallographic identification of a noncompetitive inhibitor binding site on the hepatitis C virus NS5B RNA polymerase enzyme. J.Virol., 77, 2003
3VQS	Crystal structure of HCV NS5B RNA polymerase with a novel piperazine inhibitor Descriptor: (2R)-4-(5-cyclopropyl[1,3]thiazolo[4,5-d]pyrimidin-2-yl)-N-[3-fluoro-4-(trifluoromethoxy)benzyl]-1-{[4-(trifluoromethyl)phenyl]sulfonyl}piperazine-2-carboxamide, CHLORIDE ION, RNA-directed RNA polymerase Authors: Adachi, T, Doi, S, Ando, I, Sugimoto, K, Orita, T, Nomura, A, Kamada, M. Deposit date: 2012-03-30 Release date: 2012-08-08 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Preclinical Characterization of JTK-853, a Novel Nonnucleoside Inhibitor of the Hepatitis C Virus RNA-Dependent RNA Polymerase. Antimicrob.Agents Chemother., 56, 2012
7AKP	Crystal structure of E. coli RNA helicase HrpA-D305A Descriptor: ATP-dependent RNA helicase HrpA Authors: Grass, L.M, Wollenhaupt, J, Barthel, T, Loll, B, Wahl, M.C. Deposit date: 2020-10-01 Release date: 2021-06-30 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.59 Å) Cite: Large-scale ratcheting in a bacterial DEAH/RHA-type RNA helicase that modulates antibiotics susceptibility. Proc.Natl.Acad.Sci.USA, 118, 2021
6CB3	Crystal structure of the L.Lactis YkoY riboswitch bound to cadmium Descriptor: BARIUM ION, CADMIUM ION, GUANOSINE-5'-TRIPHOSPHATE, ... Authors: Bachas, S, Ferre-D'amare, A.R. Deposit date: 2018-02-01 Release date: 2018-06-13 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.891 Å) Cite: Convergent Use of Heptacoordination for Cation Selectivity by RNA and Protein Metalloregulators. Cell Chem Biol, 25, 2018
483D	CRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNA Descriptor: SARCIN/RICIN RRNA DOMAIN Authors: Correll, C.C, Wool, I.G, Munishkin, A. Deposit date: 1999-07-23 Release date: 1999-10-08 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.11 Å) Cite: The two faces of the Escherichia coli 23 S rRNA sarcin/ricin domain: the structure at 1.11 A resolution. J.Mol.Biol., 292, 1999
8GAP	Structure of LARP7 protein p65-telomerase RNA complex in telomerase Descriptor: Telomerase La-related protein p65, Telomerase RNA, Telomerase associated protein p50, ... Authors: Wang, Y, He, Y, Wang, Y, Yang, Y, Singh, M, Eichhorn, C.D, Zhou, Z.H, Feigon, J. Deposit date: 2023-02-23 Release date: 2023-06-28 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Structure of LARP7 Protein p65-telomerase RNA Complex in Telomerase Revealed by Cryo-EM and NMR. J.Mol.Biol., 435, 2023
6CC3	Crystal structure of ykoY-mntP riboswitch chimera bound to cadmium Descriptor: CADMIUM ION, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... Authors: Bachas, S, Ferre-D'amare, A.R. Deposit date: 2018-02-05 Release date: 2018-06-13 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.698 Å) Cite: Convergent Use of Heptacoordination for Cation Selectivity by RNA and Protein Metalloregulators. Cell Chem Biol, 25, 2018
1MUV	Sheared A(anti)-A(anti) Base Pairs in a Destabilizing 2x2 Internal Loop: The NMR Structure of 5'(rGGCAAGCCU)2 Descriptor: 5'-R(*GP*GP*CP*AP*AP*GP*CP*CP*U)-3' Authors: Znosko, B.M, Burkard, M.E, Schroeder, S.J, Krugh, T.R, Turner, D.H. Deposit date: 2002-09-24 Release date: 2002-12-18 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Sheared Aanti-Aanti Base Pairs in a Destabilizing 2x2 Internal Loop: The NMR Structure of 5'(rGGCAAGCCU)2 Biochemistry, 41, 2002
6CC1	Crystal structure of ykoY-alx riboswitch chimera bound to cadmium Descriptor: BARIUM ION, CADMIUM ION, GUANOSINE-5'-TRIPHOSPHATE, ... Authors: Bachas, S.T, Ferre-D'amare, A.R. Deposit date: 2018-02-05 Release date: 2018-06-13 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.54 Å) Cite: Convergent Use of Heptacoordination for Cation Selectivity by RNA and Protein Metalloregulators. Cell Chem Biol, 25, 2018

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