PDB: 125 resultsInfo pagesStatus searchChemie searchBIRD

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3Q4J	Structure of a small peptide ligand bound to E.coli DNA sliding clamp Descriptor: DNA polymerase III subunit beta, peptide ligand Authors: Wolff, P, Olieric, V, Briand, J.P, Chaloin, O, Dejaegere, A, Dumas, P, Ennifar, E, Guichard, G, Wagner, J, Burnouf, D. Deposit date: 2010-12-23 Release date: 2011-12-28 Last modified: 2013-03-20 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structure-based design of short peptide ligands binding onto the E. coli processivity ring. J.Med.Chem., 54, 2011
3Q4K	Structure of a small peptide ligand bound to E.coli DNA sliding clamp Descriptor: DNA polymerase III subunit beta, peptide ligand Authors: Wolff, P, Olieric, V, Briand, J.P, Chaloin, O, Dejaegere, A, Dumas, P, Ennifar, E, Guichard, G, Wagner, J, Burnouf, D. Deposit date: 2010-12-23 Release date: 2011-12-28 Last modified: 2013-03-20 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structure-based design of short peptide ligands binding onto the E. coli processivity ring. J.Med.Chem., 54, 2011
3Q4L	Structure of a small peptide ligand bound to E.coli DNA sliding clamp Descriptor: DNA polymerase III subunit beta, SODIUM ION, peptide ligand Authors: Wolff, P, Olieric, V, Briand, J.P, Chaloin, O, Dejaegere, A, Dumas, P, Ennifar, E, Guichard, G, Wagner, J, Burnouf, D. Deposit date: 2010-12-23 Release date: 2011-12-28 Last modified: 2013-03-20 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Structure-based design of short peptide ligands binding onto the E. coli processivity ring. J.Med.Chem., 54, 2011
3PWE	Crystal structure of the E. coli beta clamp mutant R103C, I305C, C260S, C333S at 2.2A resolution Descriptor: DNA polymerase III subunit beta Authors: Marzahn, M.R, Robbins, A.H, McKenna, R, Bloom, L.B. Deposit date: 2010-12-08 Release date: 2011-10-19 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.199 Å) Cite: The E. coli clamp loader can actively pry open the beta-sliding clamp J.Biol.Chem., 286, 2011
4K3O	E. coli sliding clamp in complex with AcQADLF Descriptor: (ACE)QADLF, 1,2-ETHANEDIOL, CALCIUM ION, ... Authors: Yin, Z, Oakley, A.J. Deposit date: 2013-04-11 Release date: 2013-05-01 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (2 Å) Cite: Structural and Thermodynamic Dissection of Linear Motif Recognition by the E. coli Sliding Clamp J.Med.Chem., 56, 2013
4K3K	E. Coli sliding clamp in complex with (S)-2-(4-methylpentanamido)-3-phenylpropanoic acid Descriptor: CALCIUM ION, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ... Authors: Yin, Z, Oakley, A.J. Deposit date: 2013-04-10 Release date: 2013-05-01 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Structural and Thermodynamic Dissection of Linear Motif Recognition by the E. coli Sliding Clamp J.Med.Chem., 56, 2013
4K3P	E. coli sliding clamp in complex with AcQLALF Descriptor: (ACE)QLALF, 1,2-ETHANEDIOL, CALCIUM ION, ... Authors: Yin, Z, Oakley, A.J. Deposit date: 2013-04-11 Release date: 2013-05-01 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Structural and Thermodynamic Dissection of Linear Motif Recognition by the E. coli Sliding Clamp J.Med.Chem., 56, 2013
4K3R	E. coli sliding clamp in complex with AcQLDLA Descriptor: (ACE)QLDLA, CALCIUM ION, CHLORIDE ION, ... Authors: Yin, Z, Oakley, A.J. Deposit date: 2013-04-11 Release date: 2013-05-01 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.86 Å) Cite: Structural and Thermodynamic Dissection of Linear Motif Recognition by the E. coli Sliding Clamp J.Med.Chem., 56, 2013
4K3S	E. coli sliding clamp in P1 crystal space group Descriptor: CALCIUM ION, DNA polymerase III subunit beta, O-ACETALDEHYDYL-HEXAETHYLENE GLYCOL, ... Authors: Yin, Z, Oakley, A.J. Deposit date: 2013-04-11 Release date: 2013-05-01 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Structural and Thermodynamic Dissection of Linear Motif Recognition by the E. coli Sliding Clamp J.Med.Chem., 56, 2013
4K3L	E. coli sliding clamp in complex with AcLF dipeptide Descriptor: 1,2-ETHANEDIOL, ACETYL GROUP, CALCIUM ION, ... Authors: Yin, Z, Oakley, A.J. Deposit date: 2013-04-10 Release date: 2013-05-01 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Structural and Thermodynamic Dissection of Linear Motif Recognition by the E. coli Sliding Clamp J.Med.Chem., 56, 2013
4TR8	Crystal structure of DNA polymerase sliding clamp from Pseudomonas aeruginosa Descriptor: DNA polymerase III subunit beta, SODIUM ION Authors: Olieric, V, Burnouf, D, Ennifar, E, Wolff, P. Deposit date: 2014-06-15 Release date: 2014-09-10 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Differential Modes of Peptide Binding onto Replicative Sliding Clamps from Various Bacterial Origins. J.Med.Chem., 57, 2014
4TR6	Crystal structure of DNA polymerase sliding clamp from Bacillus subtilis Descriptor: DNA polymerase III subunit beta, SODIUM ION Authors: Burnouf, D, Olieric, V, Ennifar, E, Wolff, P. Deposit date: 2014-06-14 Release date: 2014-09-10 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Differential Modes of Peptide Binding onto Replicative Sliding Clamps from Various Bacterial Origins. J.Med.Chem., 57, 2014
4RKI	Crystal structure of sliding beta clamp from Helicobacter pylori Descriptor: DNA polymerase III subunit beta Authors: Satyawali, P, Tarique, K.F, Abdul Rehman, S.A, Gourinath, S. Deposit date: 2014-10-13 Release date: 2016-01-13 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Structural insight into beta-Clamp and its interaction with DNA Ligase in Helicobacter pylori. Sci Rep, 6, 2016
4TSZ	Crystal structure of DNA polymerase sliding clamp from Pseudomonas aeruginosa with ligand Descriptor: ACE-GLN-ALC-ASP-LEU-ZCL peptide, DNA polymerase III subunit beta Authors: Olieric, V, Burnouf, D, Ennifar, E, Wolff, P. Deposit date: 2014-06-19 Release date: 2014-09-10 Last modified: 2016-12-21 Method: X-RAY DIFFRACTION (2 Å) Cite: Differential Modes of Peptide Binding onto Replicative Sliding Clamps from Various Bacterial Origins. J.Med.Chem., 57, 2014
4S3I	Crystal structure of beta clamp from Helicobacter pylori Descriptor: DNA polymerase III subunit beta Authors: Pandey, P, Tarique, K.F, Abdul Rehman, S.A, Gourinath, S. Deposit date: 2015-01-28 Release date: 2016-02-03 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.946 Å) Cite: Structural insight into beta-Clamp and its interaction with DNA Ligase in Helicobacter pylori. Sci Rep, 6, 2016
4TRT	Deinococcus radiodurans DNA polymerase III subunit beta Descriptor: DNA polymerase III subunit beta Authors: Niiranen, L, Lian, K, Johnson, K.A, Moe, E. Deposit date: 2014-06-17 Release date: 2015-04-29 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal structure of the DNA polymerase III beta subunit ( beta-clamp) from the extremophile Deinococcus radiodurans. Bmc Struct.Biol., 15, 2015
4TR7	Crystal structure of DNA polymerase sliding clamp from Mycobaterium tuberculosis Descriptor: DNA polymerase III subunit beta Authors: Olieric, V, Burnouf, D, Ennifar, E, Wolff, P. Deposit date: 2014-06-14 Release date: 2014-09-10 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.29 Å) Cite: Differential Modes of Peptide Binding onto Replicative Sliding Clamps from Various Bacterial Origins. J.Med.Chem., 57, 2014
8CIZ	DNA-polymerase sliding clamp (DnaN) from Escherichia coli in complex with Mycoplanecin A. Descriptor: Beta sliding clamp, Mycoplanecin A Authors: Fu, C, Liu, Y, Walt, C, Bader, C, Rasheed, S, Lukat, P, Neuber, M, Blankenfeldt, W, Kalinina, O, Mueller, R. Deposit date: 2023-02-11 Release date: 2023-11-29 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.27 Å) Cite: Elucidation of unusual biosynthesis and DnaN-targeting mode of action of potent anti-tuberculosis antibiotics Mycoplanecins. Nat Commun, 15, 2024
8CIY	DNA-polymerase sliding clamp (DnaN) from Escherichia coli in complex with Cyclohexyl-Griselimycin. Descriptor: ACETATE ION, Beta sliding clamp, CALCIUM ION, ... Authors: Fu, C, Liu, Y, Walt, C, Bader, C, Rasheed, S, Lukat, P, Neuber, M, Blankenfeldt, W, Kalinina, O, Mueller, R. Deposit date: 2023-02-11 Release date: 2023-11-29 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.54 Å) Cite: Elucidation of unusual biosynthesis and DnaN-targeting mode of action of potent anti-tuberculosis antibiotics Mycoplanecins. Nat Commun, 15, 2024
8CIX	DNA-polymerase sliding clamp (DnaN) from Escherichia coli in complex with Griselimycin. Descriptor: ACETATE ION, Beta sliding clamp, CALCIUM ION, ... Authors: Fu, C, Liu, Y, Walt, C, Bader, C, Rasheed, S, Lukat, P, Neuber, M, Blankenfeldt, W, Kalinina, O, Mueller, R. Deposit date: 2023-02-11 Release date: 2023-11-29 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.76 Å) Cite: Elucidation of unusual biosynthesis and DnaN-targeting mode of action of potent anti-tuberculosis antibiotics Mycoplanecins. Nat Commun, 15, 2024
8DJQ	Sliding-clamp-DnaE1 peptide Descriptor: ACETYL GROUP, AMINO GROUP, Beta sliding clamp, ... Authors: Kapur, M.K, Gray, O.J, Honzatko, R.H, Nelson, S.N. Deposit date: 2022-07-01 Release date: 2023-01-18 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Interaction of the sliding clamp with mycobacterial polymerases To Be Published
5FKU	cryo-EM structure of the E. coli replicative DNA polymerase complex in DNA free state (DNA polymerase III alpha, beta, epsilon, tau complex) Descriptor: DNA POLYMERASE III SUBUNIT ALPHA, DNA POLYMERASE III SUBUNIT BETA, DNA POLYMERASE III SUBUNIT EPSILON, ... Authors: Fernandez-Leiro, R, Conrad, J, Scheres, S.H.W, Lamers, M.H. Deposit date: 2015-10-20 Release date: 2015-11-25 Last modified: 2024-05-08 Method: ELECTRON MICROSCOPY (8.34 Å) Cite: cryo-EM structures of theE. colireplicative DNA polymerase reveal its dynamic interactions with the DNA sliding clamp, exonuclease andtau. Elife, 4, 2015
5FRQ	Crystal Structure of Helicobacter pylori beta clamp bound to DNA ligase peptide Descriptor: DNA LIGASE, DNA POLYMERASE III SUBUNIT BETA Authors: Pandey, P, Gourinath, S. Deposit date: 2015-12-21 Release date: 2016-08-17 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Structural Insight Into Beta-Clamp and its Interaction with DNA Ligase in Helicobacter Pylori Sci.Rep., 6, 2016
5FXT	Crystal Structure of Helicobacter pylori beta clamp in complex with Carprofen Descriptor: (2S)-2-(6-chloro-9H-carbazol-2-yl)propanoic acid, DNA POLYMERASE III SUBUNIT BETA Authors: Pandey, P, Gourinath, S. Deposit date: 2016-03-02 Release date: 2017-08-16 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.97 Å) Cite: Screening of E. coli beta-clamp Inhibitors Revealed that Few Inhibit Helicobacter pylori More Effectively: Structural and Functional Characterization. Antibiotics (Basel), 7, 2018
8DJ6	Sliding-clamp-ImuB peptide Descriptor: ACETATE ION, Beta sliding clamp, FORMIC ACID, ... Authors: Kapur, M.K, Gray, O.J, Honzatko, R.H, Nelson, S.N. Deposit date: 2022-06-30 Release date: 2023-07-26 Last modified: 2024-10-09 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Interaction of sliding clamp with mycobacterial polymerases To Be Published

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