PDB: 45953 resultsInfo pagesStatus searchChemie searchBIRD

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4DSJ	Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus with duplex DNA, dGTP and Calcium Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA, ... Authors: Gan, J.H, Abdur, R, Liu, H.H, Sheng, J, Caton-Willians, J, Soares, A.S, Huang, Z. Deposit date: 2012-02-19 Release date: 2013-03-27 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.86 Å) Cite: Biochemical and structural insights into the fidelity of bacillus stearothermophilus DNA polymerase To be Published
2JOX	Embryonic Neural Inducing Factor Churchill is not a DNA-Binding Zinc Finger Protein: Solution Structure Reveals a Solvent-Exposed beta-Sheet and Zinc Binuclear Cluster Descriptor: Churchill protein, ZINC ION Authors: Lee, B.M, Buck-Koehntop, B.A, Martinez-Yamout, M.A, Gottesfeld, J.M, Dyson, H, Wright, P.E. Deposit date: 2007-04-07 Release date: 2007-08-21 Last modified: 2024-05-08 Method: SOLUTION NMR Cite: Embryonic Neural Inducing Factor Churchill Is not a DNA-binding Zinc Finger Protein: Solution Structure Reveals a Solvent-exposed beta-Sheet and Zinc Binuclear Cluster J.Mol.Biol., 371, 2007
1U78	Structure of the bipartite DNA-binding domain of Tc3 transposase bound to transposon DNA Descriptor: 26-MER, transposable element tc3 transposase Authors: Watkins, S, van Pouderoyen, G, Sixma, T.K. Deposit date: 2004-08-03 Release date: 2004-08-31 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.69 Å) Cite: Structural analysis of the bipartite DNA-binding domain of Tc3 transposase bound to transposon DNA Nucleic Acids Res., 32, 2004
4DSI	Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus with duplex DNA, Se-dGTP and Calcium Descriptor: 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE, CALCIUM ION, DNA, ... Authors: Gan, J.H, Abdur, R, Liu, H.H, Sheng, J, Caton-Willians, J, Soares, A.S, Huang, Z. Deposit date: 2012-02-19 Release date: 2013-03-27 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Biochemical and structural insights into the fidelity of bacillus stearothermophilus DNA polymerase To be Published
1LE8	Crystal Structure of the MATa1/MATalpha2-3A Heterodimer Bound to DNA Complex Descriptor: 5'-D(*AP*CP*AP*TP*GP*TP*AP*AP*AP*AP*AP*TP*TP*TP*AP*CP*AP*TP*CP*A)-3', 5'-D(*TP*TP*GP*AP*TP*GP*TP*AP*AP*AP*TP*TP*TP*TP*TP*AP*CP*AP*TP*G)-3', MATING-TYPE PROTEIN A-1, ... Authors: Ke, A, Mathias, J.R, Vershon, A.K, Wolberger, C. Deposit date: 2002-04-09 Release date: 2002-05-03 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structural and Thermodynamic Characterization of the DNA Binding Properties of a Triple Alanine Mutant of MATalpha2 Structure, 10, 2002
3TAR	Crystal Structure of Bacillus DNA Polymerase I Large Fragment Bound to Duplex DNA with Cytosine-Adenine Mismatch at (n-6) Position Descriptor: 5'-D(*GP*AP*CP*GP*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3', 5'-D(*GP*CP*GP*AP*TP*CP*AP*CP*GP*CP*AP*CP*GP*TP*C)-3', DNA polymerase I, ... Authors: Wang, W, Beese, L.S. Deposit date: 2011-08-04 Release date: 2011-10-19 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Structural evidence for the rare tautomer hypothesis of spontaneous mutagenesis. Proc.Natl.Acad.Sci.USA, 108, 2011
8AAJ	Crystal structure of the Pyrococcus abyssi RPA (apo form) Descriptor: RPA14 subunit of the hetero-oligomeric complex involved in homologous recombination, RPA32 subunit of the hetero-oligomeric complex involved in homologous recombination, Replication factor A, ... Authors: Legrand, P, Madru, C, Sauguet, L. Deposit date: 2022-07-01 Release date: 2023-05-03 Last modified: 2024-06-19 Method: X-RAY DIFFRACTION (3.7 Å) Cite: DNA-binding mechanism and evolution of replication protein A. Nat Commun, 14, 2023
4Z7Z	Structure of the enzyme-product complex resulting from TDG action on a GT mismatch in the presence of excess base Descriptor: 1,2-ETHANEDIOL, ACETIC ACID, DNA (28-MER), ... Authors: Pozharski, E, Malik, S.S, Drohat, A.C. Deposit date: 2015-04-08 Release date: 2015-09-16 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.83 Å) Cite: Thymine DNA glycosylase exhibits negligible affinity for nucleobases that it removes from DNA. Nucleic Acids Res., 43, 2015
3TAP	Crystal Structure of Bacillus DNA Polymerase I Large Fragment Bound to Duplex DNA with Cytosine-Adenine Mismatch at (n-3) Position Descriptor: 5'-D(*G*CP*GP*AP*TP*CP*AP*CP*GP*CP*AP*C)-3', 5'-D(*GP*A*CP*GP*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3', DNA polymerase I, ... Authors: Wang, W, Beese, L.S. Deposit date: 2011-08-04 Release date: 2011-10-19 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.655 Å) Cite: Structural evidence for the rare tautomer hypothesis of spontaneous mutagenesis. Proc.Natl.Acad.Sci.USA, 108, 2011
3TAQ	Crystal Structure of Bacillus DNA Polymerase I Large Fragment Bound to Duplex DNA with Cytosine-Adenine Mismatch at (n-4) Position Descriptor: 5'-D(*GP*AP*CP*GP*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3', 5'-D(*GP*C*GP*AP*TP*CP*AP*CP*GP*CP*AP*CP*G)-3', DNA polymerase I, ... Authors: Wang, W, Beese, L.S. Deposit date: 2011-08-04 Release date: 2011-10-19 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Structural evidence for the rare tautomer hypothesis of spontaneous mutagenesis. Proc.Natl.Acad.Sci.USA, 108, 2011
1CVX	CRYSTAL STRUCTURE OF POLYAMIDE DIMER (IMPYHPPYBETADP)2 BOUND TO B-DNA DECAMER CCAGATCTGG Descriptor: 5'-D(*CP*CP*AP*GP*AP*TP*CP*TP*GP*G)-3', HYDROXYPYRROLE-IMIDAZOLE-PYRROLE POLYAMIDE Authors: Kielkopf, C.L, Bremer, R.E, White, S, Baird, E.E, Dervan, P.B, Rees, D.C. Deposit date: 1999-08-24 Release date: 2000-01-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.27 Å) Cite: Structural effects of DNA sequence on T.A recognition by hydroxypyrrole/pyrrole pairs in the minor groove. J.Mol.Biol., 295, 2000
4ELV	Snapshot of the large fragment of DNA polymerase I from Thermus Aquaticus processing modified pyrimidines Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, DNA (5'-D(*AP*AP*AP*GP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3'), ... Authors: Marx, A, Diederichs, K, Obeid, S. Deposit date: 2012-04-11 Release date: 2013-04-24 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Snapshot of the large fragment of DNA polymerase I from Thermus Aquaticus processing modified pyrimidines To be Published
2D7D	Structural insights into the cryptic DNA dependent ATP-ase activity of UvrB Descriptor: 40-mer from UvrABC system protein B, 5'-D(P*TP*TP*T)-3', ADENOSINE-5'-DIPHOSPHATE, ... Authors: Barrett, T.E. Deposit date: 2005-11-18 Release date: 2006-05-02 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structural insights into the cryptic DNA-dependent ATPase activity of UvrB J.Mol.Biol., 357, 2006
3TI0	Crystal Structure of Bacillus DNA Polymerase I Large Fragment Bound to DNA and ddGTP-dC in Closed Conformation Descriptor: 2'-3'-DIDEOXYGUANOSINE-5'-TRIPHOSPHATE, 5'-D(*C*AP*TP*CP*CP*GP*AP*GP*TP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DDG))-3', ... Authors: Wang, W, Beese, L.S. Deposit date: 2011-08-19 Release date: 2011-10-19 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.62 Å) Cite: Structural evidence for the rare tautomer hypothesis of spontaneous mutagenesis. Proc.Natl.Acad.Sci.USA, 108, 2011
3TAN	Crystal Structure of Bacillus DNA Polymerase I Large Fragment Bound to Duplex DNA with Cytosine-Adenine Mismatch at (n-1) Position Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, 5'-D(*GP*AP*CP*GP*T*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3', 5'-D(*GP*CP*GP*AP*TP*CP*AP*CP*GP*C)-3', ... Authors: Wang, W, Beese, L.S. Deposit date: 2011-08-04 Release date: 2011-10-19 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.53 Å) Cite: Structural evidence for the rare tautomer hypothesis of spontaneous mutagenesis. Proc.Natl.Acad.Sci.USA, 108, 2011
3THV	Crystal Structure of Bacillus DNA Polymerase I Large Fragment Bound to DNA and ddATP-dT in Closed Conformation Descriptor: 2',3'-dideoxyadenosine triphosphate, 5'-D(*C*AP*TP*TP*TP*GP*AP*GP*TP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(2DA))-3', ... Authors: Wang, W, Beese, L.S. Deposit date: 2011-08-19 Release date: 2011-10-19 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.611 Å) Cite: Structural evidence for the rare tautomer hypothesis of spontaneous mutagenesis. Proc.Natl.Acad.Sci.USA, 108, 2011
8B4J	Rfa1-N-terminal domain in complex with phosphorylated Ddc2 Descriptor: 1,2-ETHANEDIOL, DNA damage checkpoint protein LCD1, Replication factor A protein 1, ... Authors: Yates, L.A, Zhang, X. Deposit date: 2022-09-20 Release date: 2023-09-27 Method: X-RAY DIFFRACTION (1.58 Å) Cite: A DNA damage-induced phosphorylation circuit enhances Mec1 ATR Ddc2 ATRIP recruitment to Replication Protein A. Proc.Natl.Acad.Sci.USA, 120, 2023
8OMA	MutSbeta bound to 61bp homoduplex DNA Descriptor: ADENOSINE-5'-TRIPHOSPHATE, DNA mismatch repair protein Msh2, DNA mismatch repair protein Msh3, ... Authors: Lee, J.-H, Thomsen, M, Daub, H, Steinbacher, S, Sztyler, A, Thieulin-Pardo, G, Neudegger, T, Plotnikov, N, Iyer, R.R, Wilkinson, H, Monteagudo, E, Felsenfeld, D.P, Haque, T, Finley, M, Dominguez, C, Vogt, T.F, Prasad, B.C. Deposit date: 2023-03-31 Release date: 2023-05-24 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (3.29 Å) Cite: MutSbeta bound to 61bp homoduplex DNA To Be Published
8C5Y	RPA tetrameric supercomplex from Pyrococcus abyssi Descriptor: RPA14 subunit of the hetero-oligomeric complex involved in homologous recombination, RPA32 subunit of the hetero-oligomeric complex involved in homologous recombination, Replication factor A, ... Authors: Madru, C, Martinez-Carranza, M, Legrand, P, Sauguet, L. Deposit date: 2023-01-10 Release date: 2023-05-03 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (3.35 Å) Cite: DNA-binding mechanism and evolution of replication protein A. Nat Commun, 14, 2023
1NKP	Crystal structure of Myc-Max recognizing DNA Descriptor: 5'-D(*CP*GP*AP*GP*TP*AP*GP*CP*AP*CP*GP*TP*GP*CP*TP*AP*CP*TP*C)-3', Max protein, Myc proto-oncogene protein Authors: Nair, S.K, Burley, S.K. Deposit date: 2003-01-03 Release date: 2003-02-04 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (1.8 Å) Cite: X-ray structures of Myc-Max and Mad-Max recognizing DNA: Molecular bases of regulation by proto-oncogenic transcription factors Cell(Cambridge,Mass.), 112, 2003
6F59	Crystal structure of human Brachyury (T) G177D variant in complex with DNA Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Brachyury protein, DNA (26-MER), ... Authors: Newman, J.A, Gavard, A.E, Krojer, T, Shrestha, L, Burgess-Brown, N.A, von Delft, F, Arrowsmith, C.H, Edwards, A, Bountra, C, Gileadi, O. Deposit date: 2017-12-01 Release date: 2017-12-13 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.151 Å) Cite: Crystal structure of human Brachyury (T) G177D variant in complex with DNA To Be Published
8OM9	MutSbeta bound to (CAG)2 DNA (open form) Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA mismatch repair protein Msh2, DNA mismatch repair protein Msh3, ... Authors: Lee, J.-H, Thomsen, M, Daub, H, Steinbacher, S, Sztyler, A, Thieulin-Pardo, G, Neudegger, T, Plotnikov, N, Iyer, R.R, Wilkinson, H, Monteagudo, E, Felsenfeld, D.P, Haque, T, Finley, M, Dominguez, C, Vogt, T.F, Prasad, B.C. Deposit date: 2023-03-31 Release date: 2023-05-24 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (3.32 Å) Cite: MutSbeta bound to (CAG)2 DNA (open form) To Be Published
4BT0	MuB is an AAAplus ATPase that forms helical filaments to control target selection for DNA transposition Descriptor: ADENOSINE-5'-DIPHOSPHATE, TRANSCRIPTIONAL REGULATOR Authors: Mizuno, N, Dramicanin, M, Mizuuchi, M, Adam, J, Wang, Y, Han, Y.W, Yang, W, Steven, A.C, Mizuuchi, K, Ramon-Maiques, S. Deposit date: 2013-06-12 Release date: 2013-07-03 Last modified: 2024-05-08 Method: ELECTRON MICROSCOPY (17 Å) Cite: Mub is an Aaa+ ATPase that Forms Helical Filaments to Control Target Selection for DNA Transposition. Proc.Natl.Acad.Sci.USA, 110, 2013
3ZQ7	The Structure of DNA-binding domain of response regulator from Escherichia coli K-12 Descriptor: KDP OPERON TRANSCRIPTIONAL REGULATORY PROTEIN KDPE Authors: Patil, D.N, Tomar, S, Kumar, P. Deposit date: 2011-06-08 Release date: 2012-03-21 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.52 Å) Cite: Structure-Function Studies of DNA Binding Domain of Response Regulator Kdpe Reveals Equal Affinity Interactions at DNA Half-Sites. Plos One, 7, 2012
7OLI	Crystal structure of Pab-AGOG in complex with 8-oxoguanosine Descriptor: 1,2-ETHANEDIOL, 2'-DEOXY-8-OXOGUANOSINE, N-glycosylase/DNA lyase Authors: Coste, F, Goffinont, S, Flament, D, Castaing, B. Deposit date: 2021-05-20 Release date: 2022-06-01 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Structural and functional determinants of the archaeal 8-oxoguanine-DNA glycosylase AGOG for DNA damage recognition and processing. Nucleic Acids Res., 50, 2022

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