Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8SK2
DownloadVisualize
BU of 8sk2 by Molmil
X-ray structure of the NDM-4 beta-lactamase from Klebsiella pneumonia, apo form
Descriptor: 1,2-ETHANEDIOL, Metallo-beta-lactamase type 2, ZINC ION
Authors:Thoden, J.B, Holden, H.M.
Deposit date:2023-04-18
Release date:2023-08-23
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Characterization of a novel inhibitor for the New Delhi metallo-beta-lactamase-4: Implications for drug design and combating bacterial drug resistance.
J.Biol.Chem., 299, 2023
8R5U
DownloadVisualize
BU of 8r5u by Molmil
VIM-2 metallo-beta-lactamase in complex with benzebisheterocycle compound 14
Descriptor: Beta-lactamase VIM-2, FORMIC ACID, ZINC ION, ...
Authors:Hinchliffe, P, Spencer, J.
Deposit date:2023-11-17
Release date:2024-04-10
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Rational Design of Benzobisheterocycle Metallo-beta-Lactamase Inhibitors: A Tricyclic Scaffold Enhances Potency against Target Enzymes.
J.Med.Chem., 67, 2024
8R5T
DownloadVisualize
BU of 8r5t by Molmil
Crystal structure of NDM-1 in complex with benzobisheterocycle compound 14.
Descriptor: Metallo-beta-lactamase type 2, SULFATE ION, ZINC ION, ...
Authors:Hinchliffe, P, Spencer, J.
Deposit date:2023-11-17
Release date:2024-04-10
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Rational Design of Benzobisheterocycle Metallo-beta-Lactamase Inhibitors: A Tricyclic Scaffold Enhances Potency against Target Enzymes.
J.Med.Chem., 67, 2024
1QH3
DownloadVisualize
BU of 1qh3 by Molmil
HUMAN GLYOXALASE II WITH CACODYLATE AND ACETATE IONS PRESENT IN THE ACTIVE SITE
Descriptor: ACETATE ION, CACODYLATE ION, CHLORIDE ION, ...
Authors:Cameron, A.D, Ridderstrom, M, Olin, B, Mannervik, B.
Deposit date:1999-05-10
Release date:1999-09-24
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of human glyoxalase II and its complex with a glutathione thiolester substrate analogue.
Structure Fold.Des., 7, 1999
1QH5
DownloadVisualize
BU of 1qh5 by Molmil
HUMAN GLYOXALASE II WITH S-(N-HYDROXY-N-BROMOPHENYLCARBAMOYL)GLUTATHIONE
Descriptor: GLUTATHIONE, PROTEIN (HYDROXYACYLGLUTATHIONE HYDROLASE), S-(N-HYDROXY-N-BROMOPHENYLCARBAMOYL)GLUTATHIONE, ...
Authors:Cameron, A.D, Ridderstrom, M, Olin, B, Mannervik, B.
Deposit date:1999-05-11
Release date:1999-09-24
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal structure of human glyoxalase II and its complex with a glutathione thiolester substrate analogue.
Structure Fold.Des., 7, 1999
8T1R
DownloadVisualize
BU of 8t1r by Molmil
Crystal structure of human CPSF73 catalytic segment in complex with compound 2
Descriptor: 3-[7,7-bis(oxidanyl)-8-oxa-7-boranuidabicyclo[4.3.0]nona-1,3,5-trien-5-yl]-~{N}-[3-(3-methoxyphenyl)phenyl]propanamide, CHLORIDE ION, Cleavage and polyadenylation specificity factor subunit 3, ...
Authors:Huang, J, Tong, L.
Deposit date:2023-06-02
Release date:2023-11-08
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Anticancer benzoxaboroles block pre-mRNA processing by directly inhibiting CPSF3.
Cell Chem Biol, 31, 2024
8T1Q
DownloadVisualize
BU of 8t1q by Molmil
Crystal structure of human CPSF73 catalytic segment in complex with compound 1
Descriptor: 3-[7,7-bis(oxidanyl)-8-oxa-7-boranuidabicyclo[4.3.0]nona-1,3,5-trien-5-yl]-~{N}-[3-(4-ethanoylphenyl)phenyl]propanamide, CHLORIDE ION, Cleavage and polyadenylation specificity factor subunit 3, ...
Authors:Huang, J, Tong, L.
Deposit date:2023-06-02
Release date:2023-11-08
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Anticancer benzoxaboroles block pre-mRNA processing by directly inhibiting CPSF3.
Cell Chem Biol, 31, 2024
5U8O
DownloadVisualize
BU of 5u8o by Molmil
Crystal Structure of Beta-lactamase domain protein, from Burkholderia multivorans
Descriptor: CALCIUM ION, CHLORIDE ION, UNKNOWN ATOM OR ION, ...
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2016-12-14
Release date:2017-01-25
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structure of Beta-lactamase domain protein, from Burkholderia multivorans
to be published
7PCR
DownloadVisualize
BU of 7pcr by Molmil
Helicobacter pylori RNase J
Descriptor: Ribonuclease J
Authors:Luisi, B.F, Pei, X.Y.
Deposit date:2021-08-03
Release date:2022-05-25
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Acetylation regulates the oligomerization state and activity of RNase J, the Helicobacter pylori major ribonuclease.
Nat Commun, 14, 2023
8EWO
DownloadVisualize
BU of 8ewo by Molmil
Crystal structure of putative glyoxylase II from Pseudomonas aeruginosa
Descriptor: CHLORIDE ION, GLYCEROL, PA1813, ...
Authors:Stogios, P.J, Skarina, T, Endres, M, Savchenko, A, Joachimiak, A, Satchell, K.J.F, Center for Structural Genomics of Infectious Diseases (CSGID), Center for Structural Biology of Infectious Diseases (CSBID)
Deposit date:2022-10-24
Release date:2022-11-16
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.47 Å)
Cite:Crystal structure of putative glyoxylase II from Pseudomonas aeruginosa
To Be Published
8CGL
DownloadVisualize
BU of 8cgl by Molmil
Cryo-EM structure of RNase J from Helicobacter pylori
Descriptor: Ribonuclease J
Authors:Lulla, A, Luisi, B.F.
Deposit date:2023-02-05
Release date:2023-12-27
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Acetylation regulates the oligomerization state and activity of RNase J, the Helicobacter pylori major ribonuclease.
Nat Commun, 14, 2023
3A4Y
DownloadVisualize
BU of 3a4y by Molmil
Crystal Structure of H61A mutant TTHA0252 from Thermus thermophilus HB8
Descriptor: CITRATE ANION, Ribonuclease TTHA0252, SULFATE ION, ...
Authors:Ishikawa, H, Nakagawa, N, Kuramitsu, S, Yokoyama, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2009-07-22
Release date:2009-08-04
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of H61A mutant TTHA0252 from Thermus thermophilus HB8
to be published
6RZ0
DownloadVisualize
BU of 6rz0 by Molmil
Crystal structure of Escherichia coli Glyoxalase II
Descriptor: 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID, CHLORIDE ION, GLYCEROL, ...
Authors:Skorupskaite, A, McDonough, M.A, Schofield, C.J.
Deposit date:2019-06-12
Release date:2020-07-15
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Crystal structure of Escherichia coli Glyoxalase II
To Be Published
6S0I
DownloadVisualize
BU of 6s0i by Molmil
Crystal structure of Escherichia coli Glyoxalase II with L-Tartrate in the active site
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Hydroxyacylglutathione hydrolase GloB, L(+)-TARTARIC ACID, ...
Authors:Skorupskaite, A, McDonough, M.A, Schofield, C.J.
Deposit date:2019-06-14
Release date:2020-07-15
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.803 Å)
Cite:Crystal structure of Escherichia coli Glyoxalase II
To Be Published
6I1D
DownloadVisualize
BU of 6i1d by Molmil
Structure of the Ysh1-Mpe1 nuclease complex from S.cerevisiae
Descriptor: Endoribonuclease YSH1, GLYCEROL, Protein MPE1, ...
Authors:Hill, C.H, Boreikaite, V, Kumar, A, Casanal, A, Kubik, P, Degliesposti, G, Maslen, S, Mariani, A, von Loeffelholz, O, Girbig, M, Skehel, M, Passmore, L.A.
Deposit date:2018-10-28
Release date:2019-02-13
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Activation of the Endonuclease that Defines mRNA 3' Ends Requires Incorporation into an 8-Subunit Core Cleavage and Polyadenylation Factor Complex.
Mol.Cell, 73, 2019
1XM8
DownloadVisualize
BU of 1xm8 by Molmil
X-RAY STRUCTURE OF GLYOXALASE II FROM ARABIDOPSIS THALIANA GENE AT2G31350
Descriptor: ACETIC ACID, DI(HYDROXYETHYL)ETHER, FE (III) ION, ...
Authors:Wesenberg, G.E, Smith, D.W, Phillips Jr, G.N, Bitto, E, Bingman, C.A, Allard, S.T.M, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2004-10-01
Release date:2004-10-12
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Structural studies on a mitochondrial glyoxalase II.
J.Biol.Chem., 280, 2005
4NUR
DownloadVisualize
BU of 4nur by Molmil
Crystal structure of thermostable alkylsulfatase SdsAP from Pseudomonas sp. S9
Descriptor: MAGNESIUM ION, PSdsA, ZINC ION
Authors:Sun, L.F, Su, Y.T, Zhao, Y.H, Cai, Z.X, Wu, Y.
Deposit date:2013-12-04
Release date:2014-12-10
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.761 Å)
Cite:Crystal structure of thermostable alkylsulfatase SdsAP from Pseudomonas sp. S9
To be Published
4PDX
DownloadVisualize
BU of 4pdx by Molmil
Crystal structure of Escherchia coli uncharacterized protein YjcS
Descriptor: GLYCEROL, Putative alkyl/aryl-sulfatase YjcS, SULFATE ION
Authors:Liang, Y.J, Gao, Z.Q, Liu, Q.S, Dong, Y.H.
Deposit date:2014-04-22
Release date:2015-04-29
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structure of Escherchia coli uncharacterized protein YjcS
To Be Published
2QED
DownloadVisualize
BU of 2qed by Molmil
Crystal structure of Salmonella thyphimurium LT2 glyoxalase II
Descriptor: 1,2-ETHANEDIOL, FE (III) ION, Hydroxyacylglutathione hydrolase
Authors:Leite, N.R, Campos Bermudez, V.A, Krogh, R, Oliva, G, Soncini, F.C, Vila, A.J.
Deposit date:2007-06-25
Release date:2007-10-09
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Biochemical and Structural Characterization of Salmonella typhimurium Glyoxalase II: New Insights into Metal Ion Selectivity
Biochemistry, 46, 2007
2Q42
DownloadVisualize
BU of 2q42 by Molmil
Ensemble refinement of the protein crystal structure of glyoxalase II from Arabidopsis thaliana gene At2g31350
Descriptor: ACETIC ACID, DI(HYDROXYETHYL)ETHER, FE (III) ION, ...
Authors:Levin, E.J, Kondrashov, D.A, Wesenberg, G.E, Phillips Jr, G.N, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2007-05-31
Release date:2007-06-19
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.742 Å)
Cite:Ensemble refinement of protein crystal structures: validation and application.
Structure, 15, 2007
5AJL
DownloadVisualize
BU of 5ajl by Molmil
Sdsa sulfatase tetragonal
Descriptor: ALKYL SULFATASE, ZINC ION
Authors:De la Mora, E, Flores-Hernandez, E, Jakoncic, J, Stojanoff, V, Sanchez-Puig, N, Moreno, A.
Deposit date:2015-02-25
Release date:2015-10-07
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.45 Å)
Cite:Sdsa Polymorph Isolation and Improvement of Their Crystal Quality Using Nonconventional Crystallization Techniques
J.Appl.Crystallogr., 48, 2015
5A0V
DownloadVisualize
BU of 5a0v by Molmil
Catalysis and 5' end sensing by ribonuclease RNase J of the metallo- beta-lactamase family
Descriptor: 5'-R(*CP*GP*CP*CP*UP*CP)-3', CYTIDINE-5'-MONOPHOSPHATE, RIBONUCLEASE J, ...
Authors:Pei, X.Y, Bralley, P, Jones, G.H, Luisi, B.F.
Deposit date:2015-04-23
Release date:2015-08-19
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Linkage of Catalysis and 5' End Recognition in Ribonuclease Rnase J
Nucleic Acids Res., 43, 2015
5A0T
DownloadVisualize
BU of 5a0t by Molmil
Catalysis and 5' end sensing by ribonuclease RNase J of the metallo- beta-lactamase family
Descriptor: 5'-R(*CP*GP*CP*CP*UP)-3', DI(HYDROXYETHYL)ETHER, RIBONUCLEASE J, ...
Authors:Pei, X.Y, Bralley, P, Jones, G.H, Luisi, B.F.
Deposit date:2015-04-22
Release date:2015-08-19
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.283 Å)
Cite:Linkage of Catalysis and 5' End Recognition in Ribonuclease Rnase J
Nucleic Acids Res., 43, 2015
2ZO4
DownloadVisualize
BU of 2zo4 by Molmil
Crystal structure of metallo-beta-lactamase family protein TTHA1429 from Thermus thermophilus HB8
Descriptor: Metallo-beta-lactamase family protein, ZINC ION
Authors:Yamamura, A, Nagata, K, Agari, Y, Ebihara, A, Nakagawa, N, Yokoyama, S, Kuramitsu, S, Tanokura, M.
Deposit date:2008-05-05
Release date:2009-03-17
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of TTHA1429, a novel metallo-beta-lactamase superfamily protein from Thermus thermophilus HB8.
Proteins, 73, 2008
2XR1
DownloadVisualize
BU of 2xr1 by Molmil
DIMERIC ARCHAEAL CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR WITH N-TERMINAL KH DOMAINS (KH-CPSF) FROM METHANOSARCINA MAZEI
Descriptor: CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100 KD SUBUNIT, ZINC ION
Authors:Mir-Montazeri, B, Ammelburg, M, Forouzan, D, Lupas, A.N, Hartmann, M.D.
Deposit date:2010-09-08
Release date:2010-10-06
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Crystal Structure of a Dimeric Archaeal Cleavage and Polyadenylation Specificity Factor.
J.Struct.Biol., 173, 2011

224931

PDB entries from 2024-09-11

PDB statisticsPDBj update infoContact PDBjnumon