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5RUZ
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BU of 5ruz by Molmil
PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with ZINC000019685960
Descriptor: 4-(1H-pyrazol-3-yl)piperidine, Non-structural protein 3
Authors:Correy, G.J, Young, I.D, Thompson, M.C, Fraser, J.S.
Deposit date:2020-09-28
Release date:2020-12-16
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1 Å)
Cite:Fragment binding to the Nsp3 macrodomain of SARS-CoV-2 identified through crystallographic screening and computational docking.
Sci Adv, 7, 2021
5RU3
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BU of 5ru3 by Molmil
PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with ZINC000000161696
Descriptor: 2-fluoro-4-hydroxybenzonitrile, Non-structural protein 3
Authors:Correy, G.J, Young, I.D, Thompson, M.C, Fraser, J.S.
Deposit date:2020-09-28
Release date:2020-12-16
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1 Å)
Cite:Fragment binding to the Nsp3 macrodomain of SARS-CoV-2 identified through crystallographic screening and computational docking.
Sci Adv, 7, 2021
5RVD
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BU of 5rvd by Molmil
PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with ZINC000263980802
Descriptor: 4-[(2R)-2-cyclobutylpyrrolidin-1-yl]-7H-pyrrolo[2,3-d]pyrimidine, Non-structural protein 3
Authors:Correy, G.J, Young, I.D, Thompson, M.C, Fraser, J.S.
Deposit date:2020-09-28
Release date:2020-12-16
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1 Å)
Cite:Fragment binding to the Nsp3 macrodomain of SARS-CoV-2 identified through crystallographic screening and computational docking.
Sci Adv, 7, 2021
5RUJ
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BU of 5ruj by Molmil
PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with ZINC000000404314
Descriptor: (5-bromo-1H-indol-3-yl)acetic acid, Non-structural protein 3
Authors:Correy, G.J, Young, I.D, Thompson, M.C, Fraser, J.S.
Deposit date:2020-09-28
Release date:2020-12-16
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.01 Å)
Cite:Fragment binding to the Nsp3 macrodomain of SARS-CoV-2 identified through crystallographic screening and computational docking.
Sci Adv, 7, 2021
5RVU
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BU of 5rvu by Molmil
PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with ZINC000002506130
Descriptor: 6-phenylpyridine-3-carboxylic acid, Non-structural protein 3
Authors:Correy, G.C, Young, I.D, Thompson, M.C, Fraser, J.S.
Deposit date:2020-10-02
Release date:2020-12-16
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Fragment binding to the Nsp3 macrodomain of SARS-CoV-2 identified through crystallographic screening and computational docking.
Sci Adv, 7, 2021
5RV0
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BU of 5rv0 by Molmil
PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with ZINC000000039994
Descriptor: N-(1,3-thiazol-2-yl)benzamide, Non-structural protein 3
Authors:Correy, G.J, Young, I.D, Thompson, M.C, Fraser, J.S.
Deposit date:2020-09-28
Release date:2020-12-16
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1 Å)
Cite:Fragment binding to the Nsp3 macrodomain of SARS-CoV-2 identified through crystallographic screening and computational docking.
Sci Adv, 7, 2021
5RVG
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BU of 5rvg by Molmil
PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with ZINC000400552187_N3
Descriptor: 3-{3-[(3S)-oxolan-3-yl]propyl}-3H-purin-6-amine, Non-structural protein 3
Authors:Correy, G.J, Young, I.D, Thompson, M.C, Fraser, J.S.
Deposit date:2020-09-28
Release date:2020-12-16
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1 Å)
Cite:Fragment binding to the Nsp3 macrodomain of SARS-CoV-2 identified through crystallographic screening and computational docking.
Sci Adv, 7, 2021
4JIB
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BU of 4jib by Molmil
Crystal structure of of PDE2-inhibitor complex
Descriptor: 1-(2-hydroxyethyl)-3-(2-methylbutan-2-yl)-5-[4-(2-methyl-1H-imidazol-1-yl)phenyl]-6,7-dihydropyrazolo[4,3-e][1,4]diazepin-8(1H)-one, MAGNESIUM ION, ZINC ION, ...
Authors:Pandit, J.
Deposit date:2013-03-05
Release date:2013-05-01
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Discovery of potent, selective, bioavailable phosphodiesterase 2 (PDE2) inhibitors active in an osteoarthritis pain model, Part I: Transformation of selective pyrazolodiazepinone phosphodiesterase 4 (PDE4) inhibitors into selective PDE2 inhibitors.
Bioorg.Med.Chem.Lett., 23, 2013
7UO6
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BU of 7uo6 by Molmil
NMR structure of Pheromone-binding protein 2 in Ostrinia furnacalis
Descriptor: Pheromone binding protein 2
Authors:Ayyappan, S, Mohanty, S.
Deposit date:2022-04-12
Release date:2023-02-15
Method:SOLUTION NMR
Cite:Ostrinia furnacalis PBP2 solution NMR structure: Insight into ligand binding and release mechanisms.
Protein Sci., 31, 2022
5C91
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BU of 5c91 by Molmil
NEDD4 HECT with covalently bound indole-based inhibitor
Descriptor: E3 ubiquitin-protein ligase NEDD4, methyl (2E)-4-{[(5-methoxy-1,2-dimethyl-1H-indol-3-yl)carbonyl]amino}but-2-enoate
Authors:Span, I, Smith, A.T, Kathman, S, Statsyuk, A.V, Rosenzweig, A.C.
Deposit date:2015-06-26
Release date:2015-09-30
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.44 Å)
Cite:A Small Molecule That Switches a Ubiquitin Ligase From a Processive to a Distributive Enzymatic Mechanism.
J. Am. Chem. Soc., 137, 2015
3UK2
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BU of 3uk2 by Molmil
The structure of Pantothenate synthetase from Burkholderia thailandensis
Descriptor: 1,2-ETHANEDIOL, ADENOSINE MONOPHOSPHATE, CHLORIDE ION, ...
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2011-11-08
Release date:2011-11-16
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Combining functional and structural genomics to sample the essential Burkholderia structome.
Plos One, 8, 2013
5DU3
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BU of 5du3 by Molmil
Active form of human C1-inhibitor
Descriptor: Plasma protease C1 inhibitor
Authors:Pannu, N.S, Dijk, M, Holkers, J, Voskamp, P, Giannetti, B.M, Waterreus, W.J, van Veen, H.A.
Deposit date:2015-09-18
Release date:2016-08-31
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:How Dextran Sulfate Affects C1-inhibitor Activity: A Model for Polysaccharide Potentiation.
Structure, 24, 2016
1QNU
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BU of 1qnu by Molmil
Shiga-Like Toxin I B Subunit Complexed with the Bridged-Starfish Inhibitor
Descriptor: ETHYL-CARBAMIC ACID METHYL ESTER, METHYL-CARBAMIC ACID ETHYL ESTER, Shiga toxin 1 variant B subunit, ...
Authors:Pannu, N.S, Hayakawa, K, Read, R.J.
Deposit date:1999-10-21
Release date:2000-04-11
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:Shiga-like toxins are neutralized by tailored multivalent carbohydrate ligands.
Nature, 403, 2000
4HJI
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BU of 4hji by Molmil
Structure of the CooA pilin subunit from enterotoxigenic Escherichia coli
Descriptor: CS1 fimbrial subunit A, IMIDAZOLE, SODIUM ION
Authors:Kolappan, S, Zong, Z, Craig, L.
Deposit date:2012-10-12
Release date:2012-12-19
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The Structure of the CS1 Pilus of Enterotoxigenic Escherichia coli Reveals Structural Polymorphism.
J.Bacteriol., 195, 2013
4H0J
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BU of 4h0j by Molmil
Mutant M58C of Nostoc sp Cytochrome c6
Descriptor: Cytochrome c6, HEME C
Authors:Pannu, N.S, Skubak, P, Ubbink, M, Cavazzini, D, Rossi, G.L.
Deposit date:2012-09-08
Release date:2013-09-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:The dynamic complex of cytochrome c6 and cytochrome f studied with paramagnetic NMR spectroscopy
Biochim.Biophys.Acta, 1837, 2014
4H0K
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BU of 4h0k by Molmil
Mutant m58h of Nostoc sp cytochrome c6
Descriptor: Cytochrome c6, HEME C
Authors:Pannu, N.S, Skubak, P, Cavazzini, D, Rossi, G.L, Ubbink, M.
Deposit date:2012-09-08
Release date:2013-09-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:The dynamic complex of cytochrome c6 and cytochrome f studied with paramagnetic NMR spectroscopy
Biochim.Biophys.Acta, 1837, 2014
5R8L
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BU of 5r8l by Molmil
PanDDA analysis group deposition INTERLEUKIN-1 BETA -- Fragment Z1891773393 in complex with INTERLEUKIN-1 BETA
Descriptor: Interleukin-1 beta, N-{4-[(1S)-1-aminoethyl]phenyl}cyclopropanecarboxamide, SULFATE ION
Authors:De Nicola, G.F, Nichols, C.E.
Deposit date:2020-03-03
Release date:2020-04-22
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Mining the PDB for Tractable Cases Where X-ray Crystallography Combined with Fragment Screens Can Be Used to Systematically Design Protein-Protein Inhibitors: Two Test Cases Illustrated by IL1 beta-IL1R and p38 alpha-TAB1 Complexes.
J.Med.Chem., 63, 2020
4G7X
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BU of 4g7x by Molmil
Crystal structure of a complex between the CTXphi pIII N-terminal domain and the Vibrio cholerae TolA C-terminal domain
Descriptor: Putative uncharacterized protein, TolA protein
Authors:Kolappan, S, Ford, C.G, Craig, L.
Deposit date:2012-07-20
Release date:2012-08-29
Last modified:2012-11-07
Method:X-RAY DIFFRACTION (1.44 Å)
Cite:Crystal Structures of a CTX{varphi} pIII Domain Unbound and in Complex with a Vibrio cholerae TolA Domain Reveal Novel Interaction Interfaces.
J.Biol.Chem., 287, 2012
4G7W
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BU of 4g7w by Molmil
Crystal structure of the N-terminal domain of the minor coat protein pIII from CTXphi
Descriptor: Putative uncharacterized protein
Authors:Kolappan, S, Ford, C.G, Craig, L.
Deposit date:2012-07-20
Release date:2012-08-29
Last modified:2012-11-07
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal Structures of a CTX{varphi} pIII Domain Unbound and in Complex with a Vibrio cholerae TolA Domain Reveal Novel Interaction Interfaces.
J.Biol.Chem., 287, 2012
4IWP
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BU of 4iwp by Molmil
Crystal structure and mechanism of activation of TBK1
Descriptor: N-(3-{[5-iodo-4-({3-[(thiophen-2-ylcarbonyl)amino]propyl}amino)pyrimidin-2-yl]amino}phenyl)pyrrolidine-1-carboxamide, Serine/threonine-protein kinase TBK1
Authors:Panne, D, Larabi, A.
Deposit date:2013-01-24
Release date:2013-03-13
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.065 Å)
Cite:Crystal structure and mechanism of activation of TANK-binding kinase 1.
Cell Rep, 3, 2013
5R8P
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BU of 5r8p by Molmil
PanDDA analysis group deposition INTERLEUKIN-1 BETA -- Fragment Z818727262 in complex with INTERLEUKIN-1 BETA
Descriptor: Interleukin-1 beta, SULFATE ION, ~{N}-[[(3~{S})-oxolan-3-yl]methyl]cyclopropanamine
Authors:De Nicola, G.F, Nichols, C.E.
Deposit date:2020-03-03
Release date:2020-04-22
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Mining the PDB for Tractable Cases Where X-ray Crystallography Combined with Fragment Screens Can Be Used to Systematically Design Protein-Protein Inhibitors: Two Test Cases Illustrated by IL1 beta-IL1R and p38 alpha-TAB1 Complexes.
J.Med.Chem., 63, 2020
4IWQ
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BU of 4iwq by Molmil
Crystal structure and mechanism of activation of TBK1
Descriptor: N-{3-[(5-cyclopropyl-2-{[3-(morpholin-4-ylmethyl)phenyl]amino}pyrimidin-4-yl)amino]propyl}cyclobutanecarboxamide, Serine/threonine-protein kinase TBK1
Authors:Panne, D, Larabi, A.
Deposit date:2013-01-24
Release date:2013-03-13
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure and mechanism of activation of TANK-binding kinase 1.
Cell Rep, 3, 2013
4IWO
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BU of 4iwo by Molmil
Crystal structure and mechanism of activation of TBK1
Descriptor: N-{3-[(5-cyclopropyl-2-{[3-(2-oxopyrrolidin-1-yl)phenyl]amino}pyrimidin-4-yl)amino]propyl}cyclobutanecarboxamide, Serine/threonine-protein kinase TBK1
Authors:Panne, D, Larabi, A.
Deposit date:2013-01-24
Release date:2013-03-13
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Crystal structure and mechanism of activation of TANK-binding kinase 1.
Cell Rep, 3, 2013
7FAX
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BU of 7fax by Molmil
Complex structure of TbLeo1 and LW domain from Trypanosoma brucei
Descriptor: TbLW, TbLeo1 peptide
Authors:Liao, S, Gao, J, Tu, X.
Deposit date:2021-07-07
Release date:2022-07-27
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis for evolutionarily conserved interactions between TFIIS and Paf1C.
Int.J.Biol.Macromol., 253, 2023
7M1E
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BU of 7m1e by Molmil
Structural and functional studies about scorpine showed the presence of blocking channel and cytolytic activities as well as two different structural domains
Descriptor: Scorpine
Authors:del Rio, J.F, Lopez, A.E, Titaux, G.
Deposit date:2021-03-12
Release date:2022-01-19
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural and functional studies of scorpine: A channel blocker and cytolytic peptide.
Toxicon, 222, 2022

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