Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6ONX
DownloadVisualize
BU of 6onx by Molmil
Dehaloperoxidase B in complex with substrate 4-Br-cresol
Descriptor: 1,2-ETHANEDIOL, 4-bromo-2-methylphenol, DI(HYDROXYETHYL)ETHER, ...
Authors:Ghiladi, R.A, de Serrano, V.S, Malewschik, T.
Deposit date:2019-04-22
Release date:2019-09-25
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The multifunctional globin dehaloperoxidase strikes again: Simultaneous peroxidase and peroxygenase mechanisms in the oxidation of EPA pollutants.
Arch.Biochem.Biophys., 673, 2019
6ONK
DownloadVisualize
BU of 6onk by Molmil
Dehaloperoxidase B in complex with substrate 4-Cl-cresol
Descriptor: 1,2-ETHANEDIOL, 4-chloro-2-methylphenol, Dehaloperoxidase B, ...
Authors:Ghiladi, R.A, de Serrano, V.S, Malewschik, T.
Deposit date:2019-04-22
Release date:2019-09-11
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The multifunctional globin dehaloperoxidase strikes again: Simultaneous peroxidase and peroxygenase mechanisms in the oxidation of EPA pollutants.
Arch.Biochem.Biophys., 673, 2019
6ONR
DownloadVisualize
BU of 6onr by Molmil
Dehaloperoxidase B in complex with substrate 4-methyl-cresol
Descriptor: 1,2-ETHANEDIOL, 2,4-dimethylphenol, DI(HYDROXYETHYL)ETHER, ...
Authors:Ghiladi, R.A, de Serrano, V.S, Malewschik, T.
Deposit date:2019-04-22
Release date:2019-09-25
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:The multifunctional globin dehaloperoxidase strikes again: Simultaneous peroxidase and peroxygenase mechanisms in the oxidation of EPA pollutants.
Arch.Biochem.Biophys., 673, 2019
6OO1
DownloadVisualize
BU of 6oo1 by Molmil
Dehaloperoxidase B in complex with substrate o-cresol
Descriptor: 1,2-ETHANEDIOL, Dehaloperoxidase B, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Ghiladi, R.A, de Serrano, V.S, Malewschik, T.
Deposit date:2019-04-22
Release date:2020-07-22
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.602 Å)
Cite:The multifunctional globin dehaloperoxidase strikes again: Simultaneous peroxidase and peroxygenase mechanisms in the oxidation of EPA pollutants.
Arch.Biochem.Biophys., 673, 2019
6OO6
DownloadVisualize
BU of 6oo6 by Molmil
Dehaloperoxidase B in complex with substrate p-cresol
Descriptor: 1,2-ETHANEDIOL, Dehaloperoxidase B, P-CRESOL, ...
Authors:Ghiladi, R.A, de Serrano, V.S, Malewschik, T.
Deposit date:2019-04-22
Release date:2019-09-25
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The multifunctional globin dehaloperoxidase strikes again: Simultaneous peroxidase and peroxygenase mechanisms in the oxidation of EPA pollutants.
Arch.Biochem.Biophys., 673, 2019
6ONZ
DownloadVisualize
BU of 6onz by Molmil
Dehaloperoxidase B in complex with substtrate 4-nitro-cresol
Descriptor: 1,2-ETHANEDIOL, 2-methyl-4-nitrophenol, Dehaloperoxidase B, ...
Authors:Ghiladi, R.A, de Serrano, V.S, Malewschik, T.
Deposit date:2019-04-22
Release date:2019-09-11
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The multifunctional globin dehaloperoxidase strikes again: Simultaneous peroxidase and peroxygenase mechanisms in the oxidation of EPA pollutants.
Arch.Biochem.Biophys., 673, 2019
7X7R
DownloadVisualize
BU of 7x7r by Molmil
Cryo-EM structure of a bacterial protein
Descriptor: RAMP superfamily protein, RNA (36-MER), RNA (5'-R(P*AP*GP*UP*CP*CP*GP*GP*GP*GP*CP*AP*GP*AP*AP*AP*AP*UP*UP*GP*G)-3'), ...
Authors:Yu, G, Wang, X, Deng, Z, Zhang, H.
Deposit date:2022-03-10
Release date:2022-11-16
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structure and function of a bacterial type III-E CRISPR-Cas7-11 complex.
Nat Microbiol, 7, 2022
7X7A
DownloadVisualize
BU of 7x7a by Molmil
Cryo-EM structure of SbCas7-11 in complex with crRNA and target RNA
Descriptor: RAMP superfamily protein, RNA (33-MER), ZINC ION
Authors:Yu, G, Wang, X, Deng, Z, Zhang, H.
Deposit date:2022-03-09
Release date:2022-11-16
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structure and function of a bacterial type III-E CRISPR-Cas7-11 complex.
Nat Microbiol, 7, 2022
2V65
DownloadVisualize
BU of 2v65 by Molmil
Apo LDH from the psychrophile C. gunnari
Descriptor: L-LACTATE DEHYDROGENASE A CHAIN
Authors:Coquelle, N, Madern, D, Vellieux, F.
Deposit date:2007-07-13
Release date:2007-09-25
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Activity, Stability and Structural Studies of Lactate Dehydrogenases Adapted to Extreme Thermal Environments.
J.Mol.Biol., 374, 2007
4L4X
DownloadVisualize
BU of 4l4x by Molmil
An A2-type ketoreductase from a modular polyketide synthase
Descriptor: AmphI, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Zheng, J, Keatinge-Clay, A.T.
Deposit date:2013-06-10
Release date:2013-06-19
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structural Studies of an A2-Type Modular Polyketide Synthase Ketoreductase Reveal Features Controlling alpha-Substituent Stereochemistry.
Acs Chem.Biol., 8, 2013
4E3J
DownloadVisualize
BU of 4e3j by Molmil
Crystal structure of AmpC beta-lactamase in complex with a designed 4-tetrazolyl benzene sulfonamide boronic acid inhibitor
Descriptor: Beta-lactamase, PHOSPHATE ION, [({[4-(1H-tetrazol-5-yl)phenyl]sulfonyl}amino)methyl]boronic acid
Authors:Eidam, O, Shoichet, B.K.
Deposit date:2012-03-09
Release date:2012-09-26
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.7999 Å)
Cite:Fragment-guided design of subnanomolar beta-lactamase inhibitors active in vivo.
Proc.Natl.Acad.Sci.USA, 109, 2012
8G1N
DownloadVisualize
BU of 8g1n by Molmil
Structure of Campylobacter concisus PglC I57M/Q175M Variant with modeled C-terminus
Descriptor: DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE, MAGNESIUM ION, N,N'-diacetylbacilliosaminyl-1-phosphate transferase, ...
Authors:Dodge, G.J, Ray, L.C, Das, D, Imperiali, B, Allen, K.N.
Deposit date:2023-02-02
Release date:2023-05-31
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.74 Å)
Cite:Co-conserved sequence motifs are predictive of substrate specificity in a family of monotopic phosphoglycosyl transferases.
Protein Sci., 32, 2023
3PGM
DownloadVisualize
BU of 3pgm by Molmil
THE STRUCTURE OF YEAST PHOSPHOGLYCERATE MUTASE AT 0.28 NM RESOLUTION
Descriptor: 3-PHOSPHOGLYCERIC ACID, Phosphoglycerate mutase 1, SULFATE ION
Authors:Campbell, J.W, Hodgson, G.I, Warwicker, J, Winn, S.I, Watson, H.C.
Deposit date:1982-04-06
Release date:1982-05-26
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure and activity of phosphoglycerate mutase.
Philos.Trans.R.Soc.London,Ser.B, 293, 1981
8SWM
DownloadVisualize
BU of 8swm by Molmil
Crystal structure of Campylobacter jejuni ketol-acid reductoisomerase in complex with 2-acetolactate
Descriptor: (2S)-2-hydroxy-2-methyl-3-oxobutanoic acid, CHLORIDE ION, Ketol-acid reductoisomerase (NADP(+)), ...
Authors:Lin, X, Lonhienne, T, Guddat, L.W.
Deposit date:2023-05-19
Release date:2024-04-24
Method:X-RAY DIFFRACTION (3 Å)
Cite:Mapping of the Reaction Trajectory catalyzed by Class I Ketol-Acid Reductoisomerase
Acs Catalysis, 2024
3OK5
DownloadVisualize
BU of 3ok5 by Molmil
Structure of the H55D mutant of dehaloperoxidase-hemoglobin A from Amphitriti ornata with 4-Bromophenol inhibitor
Descriptor: 4-BROMOPHENOL, Dehaloperoxidase A, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Zhao, J, De Serrano, V.S, Franzen, S.
Deposit date:2010-08-24
Release date:2011-09-07
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Effect of the H55D mutation on the kinetics and structure of dehaloperoxidase-hemoglobin A
To be Published
3OJ1
DownloadVisualize
BU of 3oj1 by Molmil
Structure of the H55D mutant of dehaloperoxidase-hemoglobin A from Amphitrite ornata
Descriptor: Dehaloperoxidase A, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION
Authors:Zhao, J, De Serrano, V.S, Franzen, S.
Deposit date:2010-08-20
Release date:2011-08-24
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Effect of the H55D mutation on the kinetics and structure of dehaloperoxidase-hemoglobin A
To be Published
6HRC
DownloadVisualize
BU of 6hrc by Molmil
Outward-facing PglK with ATPgammaS bound
Descriptor: MAGNESIUM ION, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, WlaB protein
Authors:Perez, C, Locher, K.P.
Deposit date:2018-09-26
Release date:2019-03-06
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structure of Outward-Facing PglK and Molecular Dynamics of Lipid-Linked Oligosaccharide Recognition and Translocation.
Structure, 27, 2019
8VKC
DownloadVisualize
BU of 8vkc by Molmil
Crystal structure of dehaloperoxidase A in complex with substrate 4-nitrophenol
Descriptor: Dehaloperoxidase A, GLYCEROL, P-NITROPHENOL, ...
Authors:Aktar, M.S, de Serrano, V.S, Ghiladi, R.A, Franzen, S.
Deposit date:2024-01-08
Release date:2024-07-17
Last modified:2024-07-24
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Structural Comparison of Substrate Binding Sites in Dehaloperoxidase A and B.
Biochemistry, 63, 2024
8VKD
DownloadVisualize
BU of 8vkd by Molmil
Crystal structure of dehaloperoxidase A in complex with substrate 4-nitrocatechol
Descriptor: 4-NITROCATECHOL, DI(HYDROXYETHYL)ETHER, DIMETHYL SULFOXIDE, ...
Authors:Aktar, M.S, de Serrano, V.S, Ghiladi, R.A, Franzen, S.
Deposit date:2024-01-08
Release date:2024-07-17
Last modified:2024-07-24
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural Comparison of Substrate Binding Sites in Dehaloperoxidase A and B.
Biochemistry, 63, 2024
8VSK
DownloadVisualize
BU of 8vsk by Molmil
Crystal structure of Dehaloperoxidase A in complex with substrate 2,4-dibromophenol
Descriptor: 2,4-bis(bromanyl)phenol, DI(HYDROXYETHYL)ETHER, Dehaloperoxidase A, ...
Authors:Aktar, M.S, de Serrano, V.S, Ghiladi, R.A, Franzen, S.
Deposit date:2024-01-24
Release date:2024-07-17
Last modified:2024-07-24
Method:X-RAY DIFFRACTION (1.515 Å)
Cite:Structural Comparison of Substrate Binding Sites in Dehaloperoxidase A and B.
Biochemistry, 63, 2024
8VZR
DownloadVisualize
BU of 8vzr by Molmil
Crystal structure of dehaloperoxidase A in complex with substrate 4-bromo-o-cresol
Descriptor: 4-bromo-2-methylphenol, DI(HYDROXYETHYL)ETHER, Dehaloperoxidase A, ...
Authors:Aktar, M.S, de Serrano, V.S, Ghiladi, R.A, Franzen, S.
Deposit date:2024-02-12
Release date:2024-07-17
Last modified:2024-07-24
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Structural Comparison of Substrate Binding Sites in Dehaloperoxidase A and B.
Biochemistry, 63, 2024
6NSJ
DownloadVisualize
BU of 6nsj by Molmil
CryoEM structure of Helicobacter pylori urea channel in closed state
Descriptor: 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHATE, Acid-activated urea channel
Authors:Cui, Y.X, Zhou, K, Strugatsky, D, Wen, Y, Sachs, G, Munson, K, Zhou, Z.H.
Deposit date:2019-01-24
Release date:2019-04-03
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:pH-dependent gating mechanism of theHelicobacter pyloriurea channel revealed by cryo-EM.
Sci Adv, 5, 2019
6NSK
DownloadVisualize
BU of 6nsk by Molmil
CryoEM structure of Helicobacter pylori urea channel in open state.
Descriptor: 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHATE, Acid-activated urea channel
Authors:Cui, Y.X, Zhou, K, Strugatsky, D, Wen, Y, Sachs, G, Munson, K, Zhou, Z.H.
Deposit date:2019-01-24
Release date:2019-04-03
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:pH-dependent gating mechanism of theHelicobacter pyloriurea channel revealed by cryo-EM.
Sci Adv, 5, 2019
3ZKW
DownloadVisualize
BU of 3zkw by Molmil
Periplasmic Binding Protein CeuE apo form
Descriptor: ENTEROCHELIN UPTAKE PERIPLASMIC BINDING PROTEIN
Authors:Raines, D.J, Moroz, O.V, Wilson, K.S, Duhme-Klair, A.K.
Deposit date:2013-01-25
Release date:2013-04-03
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Interactions of a Periplasmic Binding Protein with a Tetradentate Siderophore Mimic.
Angew.Chem.Int.Ed.Engl., 52, 2013
5OGL
DownloadVisualize
BU of 5ogl by Molmil
Structure of bacterial oligosaccharyltransferase PglB in complex with an acceptor peptide and an lipid-linked oligosaccharide analog
Descriptor: MANGANESE (II) ION, SODIUM ION, Substrate mimicking peptide, ...
Authors:Napiorkowska, M, Boilevin, J, Sovdat, T, Darbre, T, Reymond, J.-L, Aebi, M, Locher, K.P.
Deposit date:2017-07-13
Release date:2017-10-25
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Molecular basis of lipid-linked oligosaccharide recognition and processing by bacterial oligosaccharyltransferase.
Nat. Struct. Mol. Biol., 24, 2017

225681

PDB entries from 2024-10-02

PDB statisticsPDBj update infoContact PDBjnumon