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4AY2
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BU of 4ay2 by Molmil
Capturing 5' tri-phosphorylated RNA duplex by RIG-I
Descriptor: 5'-R-PPP(GP*GP*CP*GP*CP*GP*GP*CP*UP*UP*CP*GP*GP*CP *CP*GP*CP*GP*CP*C)-3', ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Luo, D, Pyle, A.M.
Deposit date:2012-06-17
Release date:2012-10-03
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Visualizing the Determinants of Viral RNA Recognition by Innate Immune Sensor Rig-I.
Structure, 20, 2012
1DFU
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BU of 1dfu by Molmil
CRYSTAL STRUCTURE OF E.COLI RIBOSOMAL PROTEIN L25 COMPLEXED WITH A 5S RRNA FRAGMENT AT 1.8 A RESOLUTION
Descriptor: 5S RRNA, MAGNESIUM ION, RIBOSOMAL PROTEIN L25
Authors:Lu, M, Steitz, T.A.
Deposit date:1999-11-21
Release date:1999-12-02
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of Escherichia coli ribosomal protein L25 complexed with a 5S rRNA fragment at 1.8-A resolution.
Proc.Natl.Acad.Sci.USA, 97, 2000
1S68
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BU of 1s68 by Molmil
Structure and Mechanism of RNA Ligase
Descriptor: ADENOSINE MONOPHOSPHATE, RNA Ligase 2
Authors:Ho, C.K, Wang, L.K, Lima, C.D, Shuman, S.
Deposit date:2004-01-22
Release date:2004-02-24
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure and mechanism of RNA ligase.
Structure, 12, 2004
1UUD
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BU of 1uud by Molmil
NMR structure of a synthetic small molecule, rbt203, bound to HIV-1 TAR RNA
Descriptor: N-[2-(2-{[(4-{[AMINO(IMINO)METHYL]AMINO}BUTYL)AMINO]METHYL}-4-METHOXYPHENOXY)ETHYL]GUANIDINE, RNA (5'-(*GP*GP*CP*AP*GP*AP*UP*CP*UP*GP*AP*GP *CP*CP*UP*GP*GP*GP*AP*GP*CP*UP*CP*UP*CP*UP*GP*CP*C) -3')
Authors:Davis, B, Afshar, M, Varani, G, Karn, J, Murchie, A.I.H, Lentzen, G, Drysdale, M.J, Potter, A.J, Bower, J, Aboul-Ela, F.
Deposit date:2003-12-18
Release date:2004-03-15
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Rational Design of Inhibitors of HIV-1 Tar RNA Through the Stabilisation of Electrostatic "Hot Spots"
J.Mol.Biol., 336, 2004
2MQV
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BU of 2mqv by Molmil
Solution NMR structure of the U5-primer binding site (U5-PBS) domain of murine leukemia virus RNA genome bound to the retroviral nucleocapsid protein
Descriptor: Nucleocapsid protein p10, RNA (68-MER), ZINC ION
Authors:D'Souza, V.M, Yildiz, Z.
Deposit date:2014-06-27
Release date:2014-09-17
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:A structure-based mechanism for tRNA and retroviral RNA remodelling during primer annealing.
Nature, 515, 2014
1HR2
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BU of 1hr2 by Molmil
CRYSTAL STRUCTURE ANALYSIS OF A MUTANT P4-P6 DOMAIN (DELC209) OF TETRAHYMENA THEMOPHILA GROUP I INTRON.
Descriptor: MAGNESIUM ION, P4-P6 DELC209 MUTANT RNA RIBOZYME DOMAIN
Authors:Juneau, K, Podell, E.R, Harrington, D.J, Cech, T.R.
Deposit date:2000-12-20
Release date:2001-04-12
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural basis of the enhanced stability of a mutant ribozyme domain and a detailed view of RNA--solvent interactions.
Structure, 9, 2001
1EJ0
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BU of 1ej0 by Molmil
FTSJ RNA METHYLTRANSFERASE COMPLEXED WITH S-ADENOSYLMETHIONINE, MERCURY DERIVATIVE
Descriptor: FTSJ, MERCURY (II) ION, S-ADENOSYLMETHIONINE
Authors:Bugl, H, Fauman, E.B, Staker, B.L, Zheng, F, Kushner, S.R, Saper, M.A, Bardwell, J.C.A, Jakob, U.
Deposit date:2000-02-29
Release date:2000-08-30
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:RNA methylation under heat shock control.
Mol.Cell, 6, 2000
1EXY
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BU of 1exy by Molmil
SOLUTION STRUCTURE OF HTLV-1 PEPTIDE BOUND TO ITS RNA APTAMER TARGET
Descriptor: HTLV-1 REX PEPTIDE, RNA APTAMER, 33-MER
Authors:Jiang, F, Gorin, A, Hu, W, Majumdar, A, Baskerville, S, Xu, W, Ellington, A, Patel, D.J.
Deposit date:2000-05-05
Release date:2000-05-15
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Anchoring an extended HTLV-1 Rex peptide within an RNA major groove containing junctional base triples.
Structure Fold.Des., 7, 1999
1HMH
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BU of 1hmh by Molmil
THREE-DIMENSIONAL STRUCTURE OF A HAMMERHEAD RIBOZYME
Descriptor: HAMMERHEAD RIBOZYME-DNA STRAND, HAMMERHEAD RIBOZYME-RNA STRAND
Authors:Pley, H.W, Flaherty, K.M, McKay, D.B.
Deposit date:1995-06-06
Release date:1995-12-07
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Three-dimensional structure of a hammerhead ribozyme.
Nature, 372, 1994
1EIZ
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BU of 1eiz by Molmil
FTSJ RNA METHYLTRANSFERASE COMPLEXED WITH S-ADENOSYLMETHIONINE
Descriptor: FTSJ, S-ADENOSYLMETHIONINE
Authors:Bugl, H, Fauman, E.B, Staker, B.L, Zheng, F, Kushner, S.R, Saper, M.A, Bardwell, J.C.A, Jakob, U.
Deposit date:2000-02-29
Release date:2000-08-30
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:RNA methylation under heat shock control.
Mol.Cell, 6, 2000
7DTK
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BU of 7dtk by Molmil
Crystal structure of the RecA1 domain of RNA helicase CGH-1 in C. elegans
Descriptor: ATP-dependent RNA helicase cgh-1, GLYCEROL
Authors:Hong, J.J, Lv, M.Q, Zhang, Y.
Deposit date:2021-01-05
Release date:2021-03-17
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.849 Å)
Cite:Structural and biochemical insights into the recognition of RNA helicase CGH-1 by CAR-1 in C. elegans.
Biochem.Biophys.Res.Commun., 549, 2021
7DTJ
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BU of 7dtj by Molmil
Crystal structure of the RecA2 domain of RNA helicase CGH-1 in C. elegans
Descriptor: ATP-dependent RNA helicase cgh-1
Authors:Zhang, Y, Lv, M.Q, Hong, J.J.
Deposit date:2021-01-05
Release date:2021-03-17
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.402 Å)
Cite:Structural and biochemical insights into the recognition of RNA helicase CGH-1 by CAR-1 in C. elegans.
Biochem.Biophys.Res.Commun., 549, 2021
1XMK
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BU of 1xmk by Molmil
The Crystal structure of the Zb domain from the RNA editing enzyme ADAR1
Descriptor: CADMIUM ION, CHLORIDE ION, Double-stranded RNA-specific adenosine deaminase, ...
Authors:Athanasiadis, A, Placido, D, Maas, S, Brown II, B.A, Lowenhaupt, K, Rich, A.
Deposit date:2004-10-03
Release date:2005-08-02
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (0.97 Å)
Cite:The Crystal Structure of the Z[beta] Domain of the RNA-editing Enzyme ADAR1 Reveals Distinct Conserved Surfaces Among Z-domains.
J.Mol.Biol., 351, 2005
7BAI
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BU of 7bai by Molmil
Structure of RIG-I CTD (I875A) bound to p-RNA
Descriptor: Antiviral innate immune response receptor RIG-I, RNA (5'-R(*(GDP)P*AP*CP*GP*CP*UP*AP*GP*CP*GP*UP*C)-3'), ZINC ION
Authors:Anand, K, Hagelueken, G, Fusshoeller, D, Geyer, M.
Deposit date:2020-12-15
Release date:2022-01-12
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:A conserved isoleucine in the RNA sensor RIG-I controls immune tolerance to mitochondrial RNA
To Be Published
7BAH
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BU of 7bah by Molmil
Structure of RIG-I CTD bound to OH-RNA
Descriptor: Antiviral innate immune response receptor RIG-I, RNA (5'-R(*GP*AP*CP*GP*CP*UP*AP*GP*CP*GP*UP*C)-3'), ZINC ION
Authors:Anand, K, Hagelueken, G, Fusshoeller, D, Geyer, M.
Deposit date:2020-12-15
Release date:2022-01-12
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:A conserved isoleucine in the RNA sensor RIG-I controls immune tolerance to mitochondrial RNA
To Be Published
2LI8
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BU of 2li8 by Molmil
The solution structure of the Lin28-ZnF domains bound to AGGAGAU of pre-let-7 miRNA
Descriptor: Protein lin-28 homolog A, RNA (5'-R(*AP*GP*GP*AP*GP*AP*U)-3'), ZINC ION
Authors:Allain, F.H.-T, Loughlin, F.E.
Deposit date:2011-08-25
Release date:2011-12-07
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structural basis of pre-let-7 miRNA recognition by the zinc knuckles of pluripotency factor Lin28.
Nat.Struct.Mol.Biol., 19, 2011
1EBR
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BU of 1ebr by Molmil
STRUCTURE OF RNA (5'-GGUGGGCGCAGCUUCGGCUGCGGUACCAC-3'), NMR, 5 STRUCTURES
Descriptor: HIV-1 REV RESPONSIVE ELEMENT RNA
Authors:Peterson, R.D, Feigon, J.
Deposit date:1997-03-20
Release date:1997-07-07
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structural change in Rev responsive element RNA of HIV-1 on binding Rev peptide.
J.Mol.Biol., 264, 1996
1EBS
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BU of 1ebs by Molmil
STRUCTURE OF RNA (5'-GGUGGGCGCAGCUUCGGCUGCGGUACCAC-3'), NMR, 5 STRUCTURES
Descriptor: HIV-1 REV RESPONSIVE ELEMENT RNA
Authors:Peterson, R.D, Feigon, J.
Deposit date:1997-03-20
Release date:1997-07-07
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structural change in Rev responsive element RNA of HIV-1 on binding Rev peptide.
J.Mol.Biol., 264, 1996
1EBQ
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BU of 1ebq by Molmil
STRUCTURE OF RNA (5'-GGUGGGCGCAGCUUCGGCUGCGGUACCAC-3'), NMR, 5 STRUCTURES
Descriptor: HIV-1 REV RESPONSIVE ELEMENT RNA
Authors:Peterson, R.D, Feigon, J.
Deposit date:1997-03-20
Release date:1997-07-07
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structural change in Rev responsive element RNA of HIV-1 on binding Rev peptide.
J.Mol.Biol., 264, 1996
4X2Y
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BU of 4x2y by Molmil
Crystal structure of a chimeric Murine Norovirus NS6 protease (inactive C139A mutant) in which the P4-P4 prime residues of the cleavage junction in the extended C-terminus have been replaced by the corresponding residues from the NS2-3 junction.
Descriptor: NS6 Protease,NS6 Protease
Authors:Leen, E.N, Pfeil, M.-P, Fernandes, H, Curry, S.
Deposit date:2014-11-27
Release date:2015-02-18
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.417 Å)
Cite:Structure determination of Murine Norovirus NS6 proteases with C-terminal extensions designed to probe protease-substrate interactions.
Peerj, 3, 2015
4X2X
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BU of 4x2x by Molmil
Crystal structure of the Murine Norovirus NS6 protease (inactive C139A mutant) with a C-terminal extension to include residues P1 prime - P4 prime of NS7
Descriptor: NS6 protease
Authors:Leen, E.N, Cromwell Jr, H, Fernandes, H, Curry, S.
Deposit date:2014-11-27
Release date:2015-02-18
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.472 Å)
Cite:Structure determination of Murine Norovirus NS6 proteases with C-terminal extensions designed to probe protease-substrate interactions.
Peerj, 3, 2015
3IGI
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BU of 3igi by Molmil
Tertiary Architecture of the Oceanobacillus Iheyensis Group II Intron
Descriptor: 5'-R(*CP*GP*CP*UP*CP*UP*AP*CP*UP*CP*UP*AP*U)-3', Group IIC intron, MAGNESIUM ION, ...
Authors:Toor, N, Keating, K.S, Fedorova, O, Rajashankar, K, Wang, J, Pyle, A.M.
Deposit date:2009-07-27
Release date:2009-12-22
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.125 Å)
Cite:Tertiary architecture of the Oceanobacillus iheyensis group II intron.
Rna, 16, 2010
1I7J
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BU of 1i7j by Molmil
CRYSTAL STRUCTURE OF 2'-O-ME(CGCGCG)2: AN RNA DUPLEX AT 1.19 A RESOLUTION. 2-METHYL-2,4-PENTANEDIOL AND MAGNESIUM BINDING.
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 5'-R(*(OMC)P*(OMG)P*(OMC)P*(OMG)P*(OMC)P*(OMG))-3', MAGNESIUM ION
Authors:Adamiak, D.A, Rypniewski, W.R, Milecki, J, Adamiak, R.W.
Deposit date:2001-03-09
Release date:2001-09-21
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.19 Å)
Cite:The 1.19 A X-ray structure of 2'-O-Me(CGCGCG)(2) duplex shows dehydrated RNA with 2-methyl-2,4-pentanediol in the minor groove.
Nucleic Acids Res., 29, 2001
2N3G
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BU of 2n3g by Molmil
Solution structure of DRB4 dsRBD1 (viz. DRB4(1-72))
Descriptor: Double-stranded RNA-binding protein 4
Authors:Deshmukh, M, Chiliveri, S.
Deposit date:2015-05-29
Release date:2016-09-07
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:DRB4 dsRBD1 drives dsRNA recognition in Arabidopsis thaliana tasi/siRNA pathway.
Nucleic Acids Res., 45, 2017
2N3H
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BU of 2n3h by Molmil
Solution structure of DRB4 dsRBD2 (viz. DRB4(81-151))
Descriptor: Double-stranded RNA-binding protein 4
Authors:Deshmukh, M, Chiliveri, S.
Deposit date:2015-05-29
Release date:2016-09-07
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:DRB4 dsRBD1 drives dsRNA recognition in Arabidopsis thaliana tasi/siRNA pathway.
Nucleic Acids Res., 45, 2017

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