PDB: 5515 resultsInfo pagesStatus searchChemie searchBIRD

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8BU0	Crystal structure of an 8 repeat consensus TPR superhelix with calcium Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, CALCIUM ION, ... Authors: Liutkus, M, Rojas, A.L, Cortajarena, A.L. Deposit date: 2022-11-30 Release date: 2023-12-13 Last modified: 2024-04-24 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Diverse crystalline protein scaffolds through metal-dependent polymorphism. Protein Sci., 33, 2024
8CHY	Crystal structure of an 8-repeat consensus TPR superhelix with Zinc. Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, CHLORIDE ION, ... Authors: Liutkus, M, Rojas, A.L, Cortajarena, A.L. Deposit date: 2023-02-08 Release date: 2024-02-21 Last modified: 2024-04-24 Method: X-RAY DIFFRACTION (2 Å) Cite: Diverse crystalline protein scaffolds through metal-dependent polymorphism. Protein Sci., 33, 2024
8CH0	Crystal structure of an 8-repeat consensus TPR superhelix with Gadolinium. Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Consensus tetratricopeptide repeat protein, ... Authors: Liutkus, M, Rojas, A.L, Cortajarena, A.L. Deposit date: 2023-02-06 Release date: 2024-02-21 Last modified: 2024-04-24 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Diverse crystalline protein scaffolds through metal-dependent polymorphism. Protein Sci., 33, 2024
8CIG	Crystal structure of an 8-repeat consensus TPR superhelix in tris Buffer with Calcium. Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, ... Authors: Liutkus, M, Rojas, A.L, Cortajarena, A.L. Deposit date: 2023-02-09 Release date: 2024-02-21 Last modified: 2024-04-24 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Diverse crystalline protein scaffolds through metal-dependent polymorphism. Protein Sci., 33, 2024
8BWW	Targeting Toll-like receptor-driven systemic inflammation by engineering an innate structural fold into drugs Descriptor: Thrombin light chain Authors: Diehl, C. Deposit date: 2022-12-07 Release date: 2023-09-06 Last modified: 2023-11-15 Method: SOLUTION NMR Cite: Targeting Toll-like receptor-driven systemic inflammation by engineering an innate structural fold into drugs. Nat Commun, 14, 2023
6D02	Cross-alpha Amyloid-like Structure alphaAmL, 2nd form Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CARBONATE ION, PHOSPHATE ION, ... Authors: Zhang, S.-Q, Liu, L, Degrado, W.F. Deposit date: 2018-04-10 Release date: 2019-02-20 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Designed peptides that assemble into cross-alpha amyloid-like structures. Nat. Chem. Biol., 14, 2018
6EGP	Crystal Structure of a Trigonal Pyramidal Pb(II)S3 Complex in a Three-stranded Coiled coil Peptide Descriptor: LEAD (II) ION, Pb(II)(GRAND CoilSerL12AL16C)3-, ZINC ION Authors: Ruckthong, L, Stuckey, J.A, Pecoraro, V.L. Deposit date: 2018-08-20 Release date: 2020-02-26 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.77 Å) Cite: Crystal Structure of a Trigonal Pyramidal Pb(II)S3 Complex in a Three-stranded Coiled coil Peptide To Be Published
8CWY	Accurate computational design of genetically encoded 3D protein crystals Descriptor: T32-15-1, T32-15-2 Authors: Li, Z, Borst, A.J, Baker, D. Deposit date: 2022-05-19 Release date: 2023-11-01 Last modified: 2023-12-20 Method: ELECTRON MICROSCOPY (3.34 Å) Cite: Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023
8CUS	Accurate computational design of genetically encoded 3D protein crystals Descriptor: I432-1(NaCl) Chain A, I432-1(NaCl) Chain B Authors: Bera, A.K, Li, Z, Baker, D. Deposit date: 2022-05-17 Release date: 2023-11-01 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (3.98 Å) Cite: Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023
8CUT	Accurate computational design of genetically encoded 3D protein crystals Descriptor: I432-1(Imd) Chain A, I432-1(Imd) Chain B Authors: Bera, A.K, Li, Z, Baker, D. Deposit date: 2022-05-17 Release date: 2023-11-01 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (4 Å) Cite: Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023
8CUW	Accurate computational design of genetically encoded 3D protein crystals Descriptor: F4132-1-3 Chain A, F4132-1-3 Chain B Authors: Bera, A.K, Li, Z, Baker, D. Deposit date: 2022-05-17 Release date: 2023-11-01 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (3.55 Å) Cite: Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023
8CUX	Accurate computational design of genetically encoded 3D protein crystals Descriptor: R3-1 Chain B Authors: Bera, A.K, Natterman, U, Baker, D. Deposit date: 2022-05-17 Release date: 2023-11-01 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023
8CWZ	Accurate computational design of genetically encoded 3D protein crystals Descriptor: I432-1-X3 Chain A, I432-1-X3 Chain B Authors: Bera, A.K, Li, Z, Baker, D. Deposit date: 2022-05-19 Release date: 2023-11-01 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (5.53 Å) Cite: Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023
8CWS	Accurate computational design of genetically encoded 3D protein crystals Descriptor: F4132-2 Chain A, F4132-2 Chain B Authors: Bera, A.K, Li, Z, Baker, D. Deposit date: 2022-05-19 Release date: 2023-11-01 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (4.4 Å) Cite: Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023
8CUU	Accurate computational design of genetically encoded 3D protein crystals Descriptor: F4132-1-0 chain A, F4132-1-0 chain B Authors: Bera, A.K, Li, Z, Baker, D. Deposit date: 2022-05-17 Release date: 2023-11-01 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.91 Å) Cite: Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023
8CUV	Accurate computational design of genetically encoded 3D protein crystals Descriptor: F4132-1 chain A, F4132-1 chain B Authors: Bera, A.K, Li, Z, Baker, D. Deposit date: 2022-05-17 Release date: 2023-11-01 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023
8DT0	Scaffolding protein functional sites using deep learning Descriptor: Scaffolding protein functional sites Authors: Bera, A.K, Watson, J, Baker, D. Deposit date: 2022-07-24 Release date: 2022-08-10 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.46 Å) Cite: Scaffolding protein functional sites using deep learning. Science, 377, 2022
8E0N	Homotrimeric variant of tcTRP9, BGL18 Descriptor: BGL18 Authors: Kibler, R, Stoddard, B.L, Kennedy, M.A. Deposit date: 2022-08-09 Release date: 2023-04-12 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (3 Å) Cite: Homotrimeric variant of tcTRP9, BGL18 To Be Published
8E0M	Homotrimeric variant of tcTRP9, BGL15 Descriptor: BGL15 Authors: Kibler, R, Stoddard, B.L, Kennedy, M.A. Deposit date: 2022-08-09 Release date: 2023-04-12 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (4 Å) Cite: Homotrimeric variant of tcTRP9, BGL15 To Be Published
8E0O	Heterotrimeric variant of tcTRP9, hetBGL03-15-18 Descriptor: hetBGL03-15-18a, hetBGL03-15-18b, hetBGL03-15-18c Authors: Kibler, R, Stoddard, B.L, Kennedy, M.A. Deposit date: 2022-08-09 Release date: 2023-04-12 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Heterotrimeric variant of tcTRP9, hetBGL03-15-18 To Be Published
8E12	Homotrimeric variant of tcTRP9, BGL14 Descriptor: BGL14 Authors: Kibler, R, Stoddard, B.L, Kennedy, M.A. Deposit date: 2022-08-09 Release date: 2023-04-12 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (3 Å) Cite: Homotrimeric variant of tcTRP9, BGL14 To Be Published
8E0L	Homotrimeric variant of tcTRP9, BGL06 Descriptor: BGL06 Authors: Kennedy, M.A, Kibler, R, Stoddard, B.L. Deposit date: 2022-08-09 Release date: 2023-04-12 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Homotrimeric variant of tcTRP9, BGL06 To Be Published
8F54	Top-down design of protein architectures with reinforcement learning Descriptor: RC_I_1 Authors: Borst, A.J, Baker, D. Deposit date: 2022-11-11 Release date: 2023-05-10 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.5 Å) Cite: Top-down design of protein architectures with reinforcement learning. Science, 380, 2023
8F4X	Top-down design of protein architectures with reinforcement learning Descriptor: RC_I_1-H11 Authors: Borst, A.J, Baker, D. Deposit date: 2022-11-11 Release date: 2023-05-10 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (3.01 Å) Cite: Top-down design of protein architectures with reinforcement learning. Science, 380, 2023
8F53	Top-down design of protein architectures with reinforcement learning Descriptor: RC_I_2 Authors: Borst, A.J, Baker, D. Deposit date: 2022-11-11 Release date: 2023-05-10 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.93 Å) Cite: Top-down design of protein architectures with reinforcement learning. Science, 380, 2023

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