PDB: 870 resultsInfo pagesStatus searchChemie searchBIRD

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3GUP	T4 lysozyme M102E/L99A mutant with buried charge in apolar cavity--pyridine binding Descriptor: CARBONATE ION, CHLORIDE ION, Lysozyme, ... Authors: Liu, L, Matthews, B.W. Deposit date: 2009-03-30 Release date: 2009-08-25 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Use of stabilizing mutations to engineer a charged group within a ligand-binding hydrophobic cavity in T4 lysozyme. Biochemistry, 48, 2009
3GUM	T4 lysozyme M102E/L99A mutant with buried charge in apolar cavity--p-xylene binding Descriptor: ACETATE ION, CALCIUM ION, CHLORIDE ION, ... Authors: Liu, L, Matthews, B.W. Deposit date: 2009-03-30 Release date: 2009-08-25 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.24 Å) Cite: Use of stabilizing mutations to engineer a charged group within a ligand-binding hydrophobic cavity in T4 lysozyme. Biochemistry, 48, 2009
3GUJ	T4 lysozyme M102E/L99A mutant with buried charge in apolar cavity--Benzene binding Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, BENZENE, BETA-MERCAPTOETHANOL, ... Authors: Liu, L, Matthews, B.W. Deposit date: 2009-03-30 Release date: 2009-08-25 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Use of stabilizing mutations to engineer a charged group within a ligand-binding hydrophobic cavity in T4 lysozyme. Biochemistry, 48, 2009
3GUO	T4 lysozyme M102E/L99A mutant with buried charge in apolar cavity--phenol binding Descriptor: CALCIUM ION, CHLORIDE ION, Lysozyme, ... Authors: Liu, L, Matthews, B.W. Deposit date: 2009-03-30 Release date: 2009-08-25 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.16 Å) Cite: Use of stabilizing mutations to engineer a charged group within a ligand-binding hydrophobic cavity in T4 lysozyme. Biochemistry, 48, 2009
3GUI	T4 lysozyme M102E/L99A mutant with buried charge in apolar cavity--Apo structure Descriptor: BETA-MERCAPTOETHANOL, CARBONATE ION, Lysozyme, ... Authors: Liu, L, Matthews, B.W. Deposit date: 2009-03-30 Release date: 2009-08-25 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.45 Å) Cite: Use of stabilizing mutations to engineer a charged group within a ligand-binding hydrophobic cavity in T4 lysozyme. Biochemistry, 48, 2009
3GUL	T4 lysozyme M102E/L99A mutant with buried charge in apolar cavity--ethylbenzene binding Descriptor: ACETATE ION, CALCIUM ION, CHLORIDE ION, ... Authors: Liu, L, Matthews, B.W. Deposit date: 2009-03-30 Release date: 2009-08-25 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.07 Å) Cite: Use of stabilizing mutations to engineer a charged group within a ligand-binding hydrophobic cavity in T4 lysozyme. Biochemistry, 48, 2009
3GUK	T4 lysozyme M102E/L99A mutant with buried charge in apolar cavity--Toluene binding Descriptor: ACETATE ION, CALCIUM ION, CHLORIDE ION, ... Authors: Liu, L, Matthews, B.W. Deposit date: 2009-03-30 Release date: 2009-08-25 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Use of stabilizing mutations to engineer a charged group within a ligand-binding hydrophobic cavity in T4 lysozyme. Biochemistry, 48, 2009
3HDF	Crystal structure of truncated endolysin R21 from phage 21 Descriptor: GLYCEROL, Lysozyme, NITRATE ION Authors: Sun, Q, Sacchettini, J.C. Deposit date: 2009-05-07 Release date: 2009-11-03 Last modified: 2017-11-01 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Regulation of a muralytic enzyme by dynamic membrane topology. Nat.Struct.Mol.Biol., 16, 2009
3HH3	New azaborine compounds bind to the T4 lysozyme L99A cavity - 1,2-dihydro-1,2-azaborine Descriptor: 1,2-dihydro-1,2-azaborinine, 2-HYDROXYETHYL DISULFIDE, Lysozyme, ... Authors: Liu, L, Matthews, B.W. Deposit date: 2009-05-14 Release date: 2009-10-13 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.25 Å) Cite: Boron mimetics: 1,2-dihydro-1,2-azaborines bind inside a nonpolar cavity of T4 lysozyme. Angew.Chem.Int.Ed.Engl., 48, 2009
3HH4	New azaborine compounds bind to the T4 lysozyme L99A cavity - Benzene as control Descriptor: 2-HYDROXYETHYL DISULFIDE, BENZENE, Lysozyme, ... Authors: Liu, L, Matthews, B.W. Deposit date: 2009-05-14 Release date: 2009-10-13 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.25 Å) Cite: Boron mimetics: 1,2-dihydro-1,2-azaborines bind inside a nonpolar cavity of T4 lysozyme. Angew.Chem.Int.Ed.Engl., 48, 2009
3HH5	New azaborine compounds bind to the T4 lysozyme L99A cavity - 1-ethyl-2-hydro-1,2-azaborine Descriptor: 1-ethyl-1,2-dihydro-1,2-azaborinine, 2-HYDROXYETHYL DISULFIDE, Lysozyme, ... Authors: Liu, L, Matthews, B.W. Deposit date: 2009-05-14 Release date: 2009-10-13 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.25 Å) Cite: Boron mimetics: 1,2-dihydro-1,2-azaborines bind inside a nonpolar cavity of T4 lysozyme. Angew.Chem.Int.Ed.Engl., 48, 2009
3HTB	2-propylphenol in complex with T4 lysozyme L99A/M102Q Descriptor: 2-propylphenol, BETA-MERCAPTOETHANOL, Lysozyme, ... Authors: Boyce, S.E, Mobley, D.L, Rocklin, G.J, Graves, A.P, Dill, K.A, Shoichet, B.K. Deposit date: 2009-06-11 Release date: 2009-11-03 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.81 Å) Cite: Predicting ligand binding affinity with alchemical free energy methods in a polar model binding site. J.Mol.Biol., 394, 2009
3HWL	Crystal Structure of T4 lysozyme with the unnatural amino acid p-Acetyl-L-Phenylalanine incorporated at position 131 Descriptor: AZIDE ION, CHLORIDE ION, Lysozyme Authors: Fleissner, M.R, Cascio, D, Schultz, P.G, Hubbell, W.L. Deposit date: 2009-06-17 Release date: 2009-12-08 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Site-directed spin labeling of a genetically encoded unnatural amino acid. Proc.Natl.Acad.Sci.USA, 106, 2009
3HT6	2-methylphenol in complex with T4 lysozyme L99A/M102Q Descriptor: Lysozyme, PHOSPHATE ION, o-cresol Authors: Boyce, S.E, Mobley, D.L, Rocklin, G.J, Graves, A.P, Dill, K.A, Shoichet, B.K. Deposit date: 2009-06-11 Release date: 2009-11-03 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.59 Å) Cite: Predicting ligand binding affinity with alchemical free energy methods in a polar model binding site. J.Mol.Biol., 394, 2009
3HTD	(Z)-Thiophene-2-carboxaldoxime in complex with T4 lysozyme L99A/M102Q Descriptor: (NZ)-N-(thiophen-2-ylmethylidene)hydroxylamine, BETA-MERCAPTOETHANOL, Lysozyme, ... Authors: Boyce, S.E, Mobley, D.L, Rocklin, G.J, Graves, A.P, Dill, K.A, Shoichet, B.K. Deposit date: 2009-06-11 Release date: 2009-11-03 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Predicting ligand binding affinity with alchemical free energy methods in a polar model binding site. J.Mol.Biol., 394, 2009
3JR6	Sequential reorganization of beta-sheet topology by insertion of a single strand Descriptor: Lysozyme, SULFATE ION Authors: Sagermann, M, Baas, W.A, Matthews, B.W. Deposit date: 2009-09-08 Release date: 2009-10-20 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (3 Å) Cite: Sequential reorganization of beta-sheet topology by insertion of a single strand. Protein Sci., 15, 2006
7L3J	T4 Lysozyme L99A - benzylacetate - RT Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, BETA-MERCAPTOETHANOL, CHLORIDE ION, ... Authors: Fischer, M, Bradford, S.Y.C. Deposit date: 2020-12-17 Release date: 2021-10-27 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.49 Å) Cite: Temperature artifacts in protein structures bias ligand-binding predictions. Chem Sci, 12, 2021
7L3A	T4 Lysozyme L99A - toluene - cryo Descriptor: Endolysin, TOLUENE Authors: Fischer, M, Bradford, S.Y.C. Deposit date: 2020-12-17 Release date: 2021-10-27 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.11 Å) Cite: Temperature artifacts in protein structures bias ligand-binding predictions. Chem Sci, 12, 2021
7L39	T4 Lysozyme L99A - toluene - RT Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, BETA-MERCAPTOETHANOL, CHLORIDE ION, ... Authors: Fischer, M, Bradford, S.Y.C. Deposit date: 2020-12-17 Release date: 2021-10-27 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.35 Å) Cite: Temperature artifacts in protein structures bias ligand-binding predictions. Chem Sci, 12, 2021
7L38	T4 Lysozyme L99A - Apo - cryo Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, BETA-MERCAPTOETHANOL, CHLORIDE ION, ... Authors: Fischer, M, Bradford, S.Y.C. Deposit date: 2020-12-17 Release date: 2021-10-27 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.33 Å) Cite: Temperature artifacts in protein structures bias ligand-binding predictions. Chem Sci, 12, 2021
7L3B	T4 Lysozyme L99A - iodobenzene - RT Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, BETA-MERCAPTOETHANOL, CHLORIDE ION, ... Authors: Fischer, M, Bradford, S.Y.C. Deposit date: 2020-12-17 Release date: 2021-10-27 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.27 Å) Cite: Temperature artifacts in protein structures bias ligand-binding predictions. Chem Sci, 12, 2021
7L37	T4 Lysozyme L99A - Apo - RT Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, BETA-MERCAPTOETHANOL, CHLORIDE ION, ... Authors: Fischer, M, Bradford, S.Y.C. Deposit date: 2020-12-17 Release date: 2021-10-27 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.439 Å) Cite: Temperature artifacts in protein structures bias ligand-binding predictions. Chem Sci, 12, 2021
7L3G	T4 Lysozyme L99A - 4-iodotoluene - cryo Descriptor: 1-iodo-4-methylbenzene, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, BETA-MERCAPTOETHANOL, ... Authors: Fischer, M, Bradford, S.Y.C. Deposit date: 2020-12-17 Release date: 2021-10-27 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.27 Å) Cite: Temperature artifacts in protein structures bias ligand-binding predictions. Chem Sci, 12, 2021
7L3F	T4 Lysozyme L99A - 4-iodotoluene - RT Descriptor: 1-iodo-4-methylbenzene, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, ... Authors: Fischer, M, Bradford, S.Y.C. Deposit date: 2020-12-17 Release date: 2021-10-27 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.49 Å) Cite: Temperature artifacts in protein structures bias ligand-binding predictions. Chem Sci, 12, 2021
3K2R	Crystal Structure of Spin Labeled T4 Lysozyme Mutant K65V1/R76V1 Descriptor: CHLORIDE ION, HEXANE-1,6-DIOL, Lysozyme, ... Authors: Toledo Warshaviak, D, Cascio, D, Khramtsov, V.V, Hubbell, W.L. Deposit date: 2009-09-30 Release date: 2010-10-13 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Crystal Structure of Spin Labeled T4 Lysozyme Mutant K65V1/R76V1 To be Published

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