Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5GZ8
DownloadVisualize
BU of 5gz8 by Molmil
Crystal structure of catalytic domain of Protein O-mannosyl Kinase in ligand-free form
Descriptor: Protein O-mannose kinase
Authors:Nagae, M, Yamaguchi, Y.
Deposit date:2016-09-27
Release date:2017-03-29
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:3D structural analysis of protein O-mannosyl kinase, POMK, a causative gene product of dystroglycanopathy.
Genes Cells, 22, 2017
1MT8
DownloadVisualize
BU of 1mt8 by Molmil
Viability of a drug-resistant HIV-1 protease mutant: structural insights for better antiviral therapy
Descriptor: ACETATE ION, Capsid-p2 substrate peptide of HIV-1 Gag polyprotein, PROTEASE RETROPEPSIN
Authors:Prabu-Jeyabalan, M, Nalivaika, E.A, King, N.M, Schiffer, C.A.
Deposit date:2002-09-20
Release date:2003-01-07
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Viability of drug-resistant human immunodeficiency virus type 1 protease variant: structural insights for better antiviral therapy
J.Virol., 77, 2003
5UUC
DownloadVisualize
BU of 5uuc by Molmil
Tetragonal thermolysin cryocooled to 100 K with 50% mpd as cryoprotectant
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, ...
Authors:Juers, D.H.
Deposit date:2017-02-16
Release date:2017-03-08
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.60000932 Å)
Cite:The impact of cryosolution thermal contraction on proteins and protein crystals: volumes, conformation and order.
Acta Crystallogr D Struct Biol, 74, 2018
5GUW
DownloadVisualize
BU of 5guw by Molmil
Complex of Cytochrome cd1 Nitrite Reductase and Nitric Oxide Reductase in Denitrification of Pseudomonas aeruginosa
Descriptor: CALCIUM ION, CHLORIDE ION, FE (III) ION, ...
Authors:Terasaka, E, Sugimoto, H, Shiro, Y, Tosha, T.
Deposit date:2016-08-31
Release date:2017-08-16
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Dynamics of nitric oxide controlled by protein complex in bacterial system
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
1EBG
DownloadVisualize
BU of 1ebg by Molmil
CHELATION OF SER 39 TO MG2+ LATCHES A GATE AT THE ACTIVE SITE OF ENOLASE: STRUCTURE OF THE BIS(MG2+) COMPLEX OF YEAST ENOLASE AND THE INTERMEDIATE ANALOG PHOSPHONOACETOHYDROXAMATE AT 2.1 ANGSTROMS RESOLUTION
Descriptor: ENOLASE, MAGNESIUM ION, PHOSPHONOACETOHYDROXAMIC ACID
Authors:Wedekind, J.E, Reed, G.H, Rayment, I.
Deposit date:1994-04-27
Release date:1995-04-27
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Chelation of serine 39 to Mg2+ latches a gate at the active site of enolase: structure of the bis(Mg2+) complex of yeast enolase and the intermediate analog phosphonoacetohydroxamate at 2.1-A resolution.
Biochemistry, 33, 1994
6L99
DownloadVisualize
BU of 6l99 by Molmil
Zinc finger of RING finger protein 144A
Descriptor: E3 ubiquitin-protein ligase RNF144A, ZINC ION
Authors:Miyamoto, K.
Deposit date:2019-11-08
Release date:2020-11-11
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Zinc finger of RING finger protein 144A
To Be Published
6D5S
DownloadVisualize
BU of 6d5s by Molmil
Hexagonal thermolysin cryocooled to 100 K with 50% MPD as cryoprotectant
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, CALCIUM ION, LYSINE, ...
Authors:Juers, D.H.
Deposit date:2018-04-19
Release date:2018-09-19
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.00003552 Å)
Cite:The impact of cryosolution thermal contraction on proteins and protein crystals: volumes, conformation and order.
Acta Crystallogr D Struct Biol, 74, 2018
9COR
DownloadVisualize
BU of 9cor by Molmil
Crystal structure of CYP3A4 bound to an inhibitor
Descriptor: (2R)-3-phenyl-2-{[(2S)-3-phenyl-2-{[N-(trifluoroacetyl)glycyl]amino}propyl]sulfanyl}-N-[2-(pyridin-3-yl)ethyl]propanamide, Cytochrome P450 3A4, PROTOPORPHYRIN IX CONTAINING FE
Authors:Sevrioukova, I.F.
Deposit date:2024-07-17
Release date:2025-01-08
Last modified:2025-03-05
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Evaluation of Larger Side-Group Functionalities and the Side/End-Group Interplay in Ritonavir-Like Inhibitors of CYP3A4.
Chem.Biol.Drug Des., 105, 2025
9COS
DownloadVisualize
BU of 9cos by Molmil
Crystal structure of CYP3A4 bound to an inhibitor
Descriptor: (2R)-3-phenyl-2-{[(2S)-3-phenyl-2-{[N-(trifluoroacetyl)glycyl]amino}propyl]sulfanyl}-N-[3-(pyridin-3-yl)propyl]propanamide, Cytochrome P450 3A4, PROTOPORPHYRIN IX CONTAINING FE
Authors:Sevrioukova, I.F.
Deposit date:2024-07-17
Release date:2025-01-08
Last modified:2025-03-05
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Evaluation of Larger Side-Group Functionalities and the Side/End-Group Interplay in Ritonavir-Like Inhibitors of CYP3A4.
Chem.Biol.Drug Des., 105, 2025
9COX
DownloadVisualize
BU of 9cox by Molmil
Crystal structure of CYP3A4 bound to an inhibitor
Descriptor: Cytochrome P450 3A4, N-[(2S)-1-(naphthalen-1-yl)-3-{[(2S)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}propan-2-yl]pyridine-3-carboxamide, PROTOPORPHYRIN IX CONTAINING FE
Authors:Sevrioukova, I.F.
Deposit date:2024-07-17
Release date:2025-01-08
Last modified:2025-03-05
Method:X-RAY DIFFRACTION (2.72 Å)
Cite:Evaluation of Larger Side-Group Functionalities and the Side/End-Group Interplay in Ritonavir-Like Inhibitors of CYP3A4.
Chem.Biol.Drug Des., 105, 2025
9COV
DownloadVisualize
BU of 9cov by Molmil
Crystal structure of CYP3A4 bound to an inhibitor
Descriptor: Cytochrome P450 3A4, N-[(2S)-1-(1H-indol-3-yl)-3-{[(2R)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}propan-2-yl]pyridine-3-carboxamide, PROTOPORPHYRIN IX CONTAINING FE
Authors:Sevrioukova, I.F.
Deposit date:2024-07-17
Release date:2025-01-08
Last modified:2025-03-05
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Evaluation of Larger Side-Group Functionalities and the Side/End-Group Interplay in Ritonavir-Like Inhibitors of CYP3A4.
Chem.Biol.Drug Des., 105, 2025
9COW
DownloadVisualize
BU of 9cow by Molmil
Crystal structure of CYP3A4 bound to an inhibitor
Descriptor: Cytochrome P450 3A4, GLYCEROL, N-[(2S)-1-(naphthalen-1-yl)-3-{[(2R)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}propan-2-yl]pyridine-3-carboxamide, ...
Authors:Sevrioukova, I.F.
Deposit date:2024-07-17
Release date:2025-01-08
Last modified:2025-03-05
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Evaluation of Larger Side-Group Functionalities and the Side/End-Group Interplay in Ritonavir-Like Inhibitors of CYP3A4.
Chem.Biol.Drug Des., 105, 2025
9COY
DownloadVisualize
BU of 9coy by Molmil
Crystal structure of CYP3A4 bound to an inhibitor
Descriptor: Cytochrome P450 3A4, N-[(2S)-1-([1,1'-biphenyl]-4-yl)-3-{[(2R)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}propan-2-yl]-2,2-dimethylpropanamide, PROTOPORPHYRIN IX CONTAINING FE
Authors:Sevrioukova, I.F.
Deposit date:2024-07-17
Release date:2025-01-08
Last modified:2025-03-05
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Evaluation of Larger Side-Group Functionalities and the Side/End-Group Interplay in Ritonavir-Like Inhibitors of CYP3A4.
Chem.Biol.Drug Des., 105, 2025
9COT
DownloadVisualize
BU of 9cot by Molmil
Crystal structure of CYP3A4 bound to an inhibitor
Descriptor: (2R)-3-phenyl-2-{[(2S)-3-phenyl-2-(2,2,2-trifluoroacetamido)propyl]sulfanyl}-N-[3-(pyridin-3-yl)propyl]propanamide, Cytochrome P450 3A4, PROTOPORPHYRIN IX CONTAINING FE
Authors:Sevrioukova, I.F.
Deposit date:2024-07-17
Release date:2025-01-08
Last modified:2025-03-05
Method:X-RAY DIFFRACTION (2.81 Å)
Cite:Evaluation of Larger Side-Group Functionalities and the Side/End-Group Interplay in Ritonavir-Like Inhibitors of CYP3A4.
Chem.Biol.Drug Des., 105, 2025
9COU
DownloadVisualize
BU of 9cou by Molmil
Crystal structure of CYP3A4 bound to an inhibitor
Descriptor: (2R)-2-{[(2S)-2-(benzenesulfonamido)-3-phenylpropyl]sulfanyl}-3-phenyl-N-[3-(pyridin-3-yl)propyl]propanamide, Cytochrome P450 3A4, PROTOPORPHYRIN IX CONTAINING FE
Authors:Sevrioiukova, I.F.
Deposit date:2024-07-17
Release date:2025-01-08
Last modified:2025-03-05
Method:X-RAY DIFFRACTION (2.81 Å)
Cite:Evaluation of Larger Side-Group Functionalities and the Side/End-Group Interplay in Ritonavir-Like Inhibitors of CYP3A4.
Chem.Biol.Drug Des., 105, 2025
6D5R
DownloadVisualize
BU of 6d5r by Molmil
Hexagonal thermolysin cryocooled to 100 K with 50% xylose as cryoprotectant
Descriptor: CALCIUM ION, LYSINE, Thermolysin, ...
Authors:Juers, D.H.
Deposit date:2018-04-19
Release date:2018-09-19
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.00002122 Å)
Cite:The impact of cryosolution thermal contraction on proteins and protein crystals: volumes, conformation and order.
Acta Crystallogr D Struct Biol, 74, 2018
6D5Q
DownloadVisualize
BU of 6d5q by Molmil
Hexagonal thermolysin cryocooled to 100 K with 30% xylose as cryoprotectant
Descriptor: CALCIUM ION, LYSINE, Thermolysin, ...
Authors:Juers, D.H.
Deposit date:2018-04-19
Release date:2018-09-19
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.00016141 Å)
Cite:The impact of cryosolution thermal contraction on proteins and protein crystals: volumes, conformation and order.
Acta Crystallogr D Struct Biol, 74, 2018
1N49
DownloadVisualize
BU of 1n49 by Molmil
Viability of a Drug-Resistant HIV-1 Protease Variant: Structural Insights for Better Anti-Viral Therapy
Descriptor: Protease, RITONAVIR
Authors:Prabu-Jeyabalan, M, Nalivaika, E.A, King, N.M, Schiffer, C.A.
Deposit date:2002-10-30
Release date:2003-01-07
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Viability of a Drug-Resistant Human Immunodeficiency Virus Type 1 Protease Variant: Structural Insights for Better Antiviral Therapy
J.VIROL., 77, 2003
6D5N
DownloadVisualize
BU of 6d5n by Molmil
Hexagonal thermolysin (295) in the presence of 50% xylose
Descriptor: CALCIUM ION, LYSINE, Thermolysin, ...
Authors:Juers, D.H.
Deposit date:2018-04-19
Release date:2018-10-31
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.00003672 Å)
Cite:The impact of cryosolution thermal contraction on proteins and protein crystals: volumes, conformation and order.
Acta Crystallogr D Struct Biol, 74, 2018
6D5U
DownloadVisualize
BU of 6d5u by Molmil
Hexagonal thermolysin cryocooled to 100 K with 50% methanol as cryoprotectant
Descriptor: CALCIUM ION, LYSINE, METHANOL, ...
Authors:Juers, D.H.
Deposit date:2018-04-19
Release date:2018-09-19
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.00009537 Å)
Cite:The impact of cryosolution thermal contraction on proteins and protein crystals: volumes, conformation and order.
Acta Crystallogr D Struct Biol, 74, 2018
5UN3
DownloadVisualize
BU of 5un3 by Molmil
Tetragonal thermolysin (295 K) in the presence of 50% xylose
Descriptor: CALCIUM ION, CHLORIDE ION, Thermolysin, ...
Authors:Juers, D.
Deposit date:2017-01-30
Release date:2017-02-22
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.60004437 Å)
Cite:The impact of cryosolution thermal contraction on proteins and protein crystals: volumes, conformation and order.
Acta Crystallogr D Struct Biol, 74, 2018
5UUB
DownloadVisualize
BU of 5uub by Molmil
Tetragonal thermolysin cryocooled to 100 K with 25% xylose/25% mpd as cryoprotectant
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, ...
Authors:Juers, D.H.
Deposit date:2017-02-16
Release date:2017-03-08
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.60000288 Å)
Cite:The impact of cryosolution thermal contraction on proteins and protein crystals: volumes, conformation and order.
Acta Crystallogr D Struct Biol, 74, 2018
1WTG
DownloadVisualize
BU of 1wtg by Molmil
Human Factor Viia-Tissue Factor Complexed with ethylsulfonamide-D-biphenylalanine-Gln-p-aminobenzamidine
Descriptor: 2-(3-BIPHENYL-4-YL-2-ETHANESULFONYLAMINO-PROPIONYLAMINO)-PENTANEDIOIC ACID 5-AMIDE 1-(4-CARBAMIMIDOYL-BENZYLAMIDE), CALCIUM ION, Coagulation factor VII, ...
Authors:Kadono, S, Sakamoto, S, Kikuchi, Y, Oh-Eda, M, Yabuta, N, Kitazawa, K, Yoshihashi, T, Suzuki, T, Koga, T, Hattori, K, Shiraishi, T, Kodama, M, Haramura, H, Ono, Y, Esaki, T, Sato, H, Watanabe, Y, Itoh, S, Ohta, M, Kozono, T.
Deposit date:2004-11-23
Release date:2005-11-23
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Novel interactions of large P3 moiety and small P4 moiety in the binding of the peptide mimetic factor VIIa inhibitor
Biochem.Biophys.Res.Commun., 326, 2005
2ALG
DownloadVisualize
BU of 2alg by Molmil
Crystal structure of peach Pru p3, the prototypic member of the family of plant non-specific lipid transfer protein pan-allergens
Descriptor: HEPTANE, HEXAETHYLENE GLYCOL, LAURIC ACID, ...
Authors:Pasquato, N, Berni, R, Folli, C, Folloni, S, Cianci, M, Pantano, S, Helliwell, J, Zanotti, G.
Deposit date:2005-08-05
Release date:2005-11-29
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of Peach Pru p 3, the Prototypic Member of the Family of Plant Non-specific Lipid Transfer Protein Pan-allergens
J.Mol.Biol., 356, 2006
6DR5
DownloadVisualize
BU of 6dr5 by Molmil
X-ray crystallographic structure of a covalent trimer derived from A-beta 17_36 containing the I31Chg point mutation
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ORT-CYS-VAL-PHE-MEA-CYS-GLU-ASP-ORT-ALA-CHG-ILE-GLY-LEU-ORA-VAL
Authors:Salveson, P.J, Nowick, J.S.
Deposit date:2018-06-11
Release date:2018-10-17
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.079 Å)
Cite:Repurposing Triphenylmethane Dyes to Bind to Trimers Derived from A beta.
J. Am. Chem. Soc., 140, 2018

238582

PDB entries from 2025-07-09

PDB statisticsPDBj update infoContact PDBjnumon