PDB: 47011 resultsInfo pagesStatus searchChemie searchBIRD

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2QSG	Crystal structure of Rad4-Rad23 bound to a UV-damaged DNA Descriptor: DNA repair protein RAD4, UV excision repair protein RAD23, damaged strand of the CPD-mismatch DNA, ... Authors: Min, J.-H, Pavletich, N.P. Deposit date: 2007-07-31 Release date: 2007-10-02 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Recognition of DNA damage by the Rad4 nucleotide excision repair protein Nature, 449, 2007
1NOZ	T4 DNA POLYMERASE FRAGMENT (RESIDUES 1-388) AT 110K Descriptor: DNA POLYMERASE Authors: Wang, J, Yu, P, Lin, T.C, Konigsberg, W.H, Steitz, T.A. Deposit date: 1996-02-16 Release date: 1996-10-14 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Crystal structures of an NH2-terminal fragment of T4 DNA polymerase and its complexes with single-stranded DNA and with divalent metal ions. Biochemistry, 35, 1996
2QSH	Crystal structure of Rad4-Rad23 bound to a mismatch DNA Descriptor: DNA repair protein RAD4, UV excision repair protein RAD23, bottom strand of the mismatch DNA, ... Authors: Min, J.-H, Pavletich, N.P. Deposit date: 2007-07-31 Release date: 2007-10-02 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.805 Å) Cite: Recognition of DNA damage by the Rad4 nucleotide excision repair protein Nature, 449, 2007
238D	CRYSTAL STRUCTURE OF THE DNA DECAMER D(AGG(BR)CATGCCT): COMPARISON WITH D(AGGCATGCCT) AND IMPLICATIONS FOR COBALT HEXAMMINE BINDING TO DNA Descriptor: DNA (5'-D(*AP*GP*GP*(CBR)P*AP*TP*GP*CP*CP*T)-3') Authors: Nunn, C.M. Deposit date: 1995-11-02 Release date: 1996-01-30 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal structure of d(AGGBrCATGCCT): implications for cobalt hexammine binding to DNA J.Biomol.Struct.Dyn., 14, 1996
6K0W	DNA methyltransferase in complex with sinefungin Descriptor: Adenine specific DNA methyltransferase (Mod), SINEFUNGIN Authors: Narayanan, N, Nair, D.T. Deposit date: 2019-05-07 Release date: 2019-12-11 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (2.65 Å) Cite: Tetramerization at Low pH Licenses DNA Methylation Activity of M.HpyAXI in the Presence of Acid Stress. J.Mol.Biol., 432, 2020
1RPL	2.3 ANGSTROMS CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF DNA POLYMERASE BETA Descriptor: DNA POLYMERASE BETA Authors: Davies II, J.F, Almassy, R.J. Deposit date: 1994-10-25 Release date: 1995-01-26 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.3 Å) Cite: 2.3 A crystal structure of the catalytic domain of DNA polymerase beta. Cell(Cambridge,Mass.), 76, 1994
2ZBK	Crystal structure of an intact type II DNA topoisomerase: insights into DNA transfer mechanisms Descriptor: RADICICOL, Type 2 DNA topoisomerase 6 subunit B, Type II DNA topoisomerase VI subunit A Authors: Graille, M, Cladiere, L, Durand, D, Lecointe, F, Forterre, P, van Tilbeurgh, H, Paris-Sud Yeast Structural Genomics (YSG) Deposit date: 2007-10-22 Release date: 2008-02-12 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (3.56 Å) Cite: Crystal Structure of an Intact Type II DNA Topoisomerase: Insights into DNA Transfer Mechanisms Structure, 16, 2008
2D94	THE CONFORMATION OF THE DNA DOUBLE HELIX IN THE CRYSTAL IS DEPENDENT ON ITS ENVIRONMENT Descriptor: DNA (5'-D(*GP*GP*GP*CP*GP*CP*CP*C)-3') Authors: Shakked, Z, Guerstein-Guzikevich, G, Eisenstein, M, Frolow, F, Rabinovich, D. Deposit date: 1993-07-13 Release date: 1994-01-15 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.7 Å) Cite: The conformation of the DNA double helix in the crystal is dependent on its environment. Nature, 342, 1989
112D	MOLECULAR STRUCTURE OF THE G.A BASE PAIR IN DNA AND ITS IMPLICATIONS FOR THE MECHANISM OF TRANSVERSION MUTATIONS Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*AP*GP*CP*G)-3') Authors: Brown, T, Hunter, W.N, Kneale, G, Kennard, O. Deposit date: 1993-01-04 Release date: 1993-07-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Molecular structure of the G.A base pair in DNA and its implications for the mechanism of transversion mutations. Proc.Natl.Acad.Sci.USA, 83, 1986
132D	SOLUTION STRUCTURE OF THE TN AN DNA DUPLEX GCCGTTAACGGC CONTAINING THE HPA I RESTRICTION SITE Descriptor: DNA (5'-D(P*GP*CP*CP*GP*TP*TP*AP*AP*CP*GP*GP*C)-3') Authors: Kim, S.-G, Reid, B.R. Deposit date: 1993-06-24 Release date: 1994-01-31 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of the TnAn DNA duplex GCCGTTAACGCG containing the HpaI restriction site. Biochemistry, 31, 1992
2Q6T	Crystal structure of the Thermus aquaticus DnaB monomer Descriptor: DnaB replication fork helicase, SULFATE ION Authors: Bailey, S, Eliason, W.K, Steitz, T.A. Deposit date: 2007-06-05 Release date: 2007-07-24 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.9 Å) Cite: The crystal structure of the Thermus aquaticus DnaB helicase monomer. Nucleic Acids Res., 35, 2007
8SJD	Cryo-EM structure of the Hermes transposase bound to two right-ends of its DNA transposon. Descriptor: DNA (46-MER), DNA (55-MER), DNA (8-MER), ... Authors: Lannes, L, Dyda, F. Deposit date: 2023-04-17 Release date: 2023-08-02 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (5.1 Å) Cite: Zinc-finger BED domains drive the formation of the active Hermes transpososome by asymmetric DNA binding. Nat Commun, 14, 2023
1AFF	DNA QUADRUPLEX CONTAINING GGGG TETRADS AND (T.A).A TRIADS, NMR, 8 STRUCTURES Descriptor: QUADRUPLEX DNA (5'-D(TP*AP*GP*G)-3') Authors: Kettani, A, Bouaziz, S, Wang, W, Jones, R.A, Patel, D.J. Deposit date: 1997-03-06 Release date: 1997-08-20 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Bombyx mori single repeat telomeric DNA sequence forms a G-quadruplex capped by base triads. Nat.Struct.Biol., 4, 1997
223D	DIRECT OBSERVATION OF TWO BASE-PAIRING MODES OF A CYTOSINE-THYMINE ANALOGUE WITH GUANINE IN A DNA Z-FORM DUPLEX: SIGNIFICANCE FOR BASE ANALOGUE MUTAGENESIS Descriptor: DNA (5'-D(*CP*GP*CP*GP*(C46)P*G)-3') Authors: Moore, M.H, Van Meervelt, L, Salisbury, S.A, Kong Thoo Lin, P, Brown, D.M. Deposit date: 1995-08-01 Release date: 1995-12-09 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Direct observation of two base-pairing modes of a cytosine-thymine analogue with guanine in a DNA Z-form duplex: significance for base analogue mutagenesis. J.Mol.Biol., 251, 1995
1EMQ	NMR OBSERVATION OF T-TETRADS IN A PARALLEL STRANDED DNA QUADRUPLEX FORMED BY SACCHAROMYCES CEREVISIAE TELOMERE REPEATS Descriptor: DNA (5'-D(*TP*GP*GP*TP*GP*GP*C)-3') Authors: Hosur, R.V, Patel, P.K. Deposit date: 2000-03-17 Release date: 2000-04-04 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: NMR observation of T-tetrads in a parallel stranded DNA quadruplex formed by Saccharomyces cerevisiae telomere repeats. Nucleic Acids Res., 27, 1999
456D	MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGMO6AATCCGCG): THE WATSON-CRICK TYPE N6-METHOXYADENOSINE/CYTIDINE BASE-PAIRS IN B-DNA Descriptor: DNA (5'-D(*CP*GP*CP*GP*(A47)P*AP*TP*CP*CP*GP*CP*G)-3'), MAGNESIUM ION Authors: Chatake, T, Ono, A, Ueno, Y, Matsuda, A, Takenaka, A. Deposit date: 1999-03-06 Release date: 2000-01-01 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Crystallographic studies on damaged DNAs. I. An N(6)-methoxyadenine residue forms a Watson-Crick pair with a cytosine residue in a B-DNA duplex. J.Mol.Biol., 294, 1999
2RMQ	Solution structure of fully modified 4'-thioDNA with the sequence of d(CGCGAATTCGCG) Descriptor: DNA (5'-D(*(C4S)P*(S4G)P*(C4S)P*(S4G)P*(S4A)P*(S4A)P*(T49)P*(T49)P*(C4S)P*(S4G)P*(C4S)P*(S4G))-3') Authors: Matsugami, A, Ohyama, T, Inada, M, Katahira, M. Deposit date: 2007-11-12 Release date: 2008-04-15 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Unexpected A-form formation of 4'-thioDNA in solution, revealed by NMR, and the implications as to the mechanism of nuclease resistance Nucleic Acids Res., 36, 2008
5ZYT	Crystal structure of human MGME1 with 3' overhang double strand DNA3 Descriptor: DNA (5'-D(P*CP*TP*TP*CP*TP*TP*CP*C)-3'), Mitochondrial genome maintenance exonuclease 1 Authors: Yang, C, Gan, J. Deposit date: 2018-05-28 Release date: 2018-09-19 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (2.702 Å) Cite: Structural insights into DNA degradation by human mitochondrial nuclease MGME1 Nucleic Acids Res., 46, 2018
3Q8L	Crystal Structure of Human Flap Endonuclease FEN1 (WT) in complex with substrate 5'-flap DNA, SM3+, and K+ Descriptor: DNA (5'-D(*AP*CP*CP*GP*TP*CP*C)-3'), DNA (5'-D(*AP*CP*TP*CP*TP*GP*CP*CP*TP*CP*AP*AP*GP*AP*CP*GP*GP*T)-3'), DNA (5'-D(*TP*TP*GP*AP*GP*GP*CP*AP*GP*AP*GP*T)-3'), ... Authors: Tsutakawa, S.E, Classen, S, Chapados, B.R, Arvai, A, Finger, D.L, Guenther, G, Tomlinson, C.G, Thompson, P, Sarker, A.H, Shen, B, Cooper, P.K, Grasby, J.A, Tainer, J.A. Deposit date: 2011-01-06 Release date: 2011-04-27 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.319 Å) Cite: Human Flap Endonuclease Structures, DNA Double-Base Flipping, and a Unified Understanding of the FEN1 Superfamily. Cell(Cambridge,Mass.), 145, 2011
5W20	Crystal Structure of inosine-substituted duplex DNA Descriptor: DNA (5'-D(*CP*CP*AP*IP*IP*CP*CP*TP*GP*G)-3'), MAGNESIUM ION Authors: Pallan, P.S, Egli, M. Deposit date: 2017-06-05 Release date: 2017-08-23 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.36 Å) Cite: Comparative analysis of inosine-substituted duplex DNA by circular dichroism and X-ray crystallography. J. Biomol. Struct. Dyn., 36, 2018
5W1Z	Crystal Structure of inosine-substituted decamer duplex DNA (I4) Descriptor: DNA (5'-D(*CP*CP*AP*IP*IP*CP*CP*(BRU)P*IP*I)-3'), MAGNESIUM ION, SODIUM ION Authors: Pallan, P.S, Egli, M. Deposit date: 2017-06-05 Release date: 2017-08-30 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Comparative analysis of inosine-substituted duplex DNA by circular dichroism and X-ray crystallography. J. Biomol. Struct. Dyn., 36, 2018
1EXL	STRUCTURE OF AN 11-MER DNA DUPLEX CONTAINING THE CARBOCYCLIC NUCLEOTIDE ANALOG: 2'-DEOXYARISTEROMYCIN Descriptor: DNA (5'-D(*CP*AP*GP*TP*GP*(2AR)P*GP*TP*CP*AP*C)-3'), DNA (5'-D(*GP*TP*GP*AP*CP*TP*CP*AP*CP*TP*G)-3') Authors: Smirnov, S, Johnson, F, Marumoto, R, de los Santos, C. Deposit date: 2000-05-03 Release date: 2000-05-15 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Structure of an 11-mer DNA duplex containing the carbocyclic nucleotide analog: 2'-deoxyaristeromycin J.Biomol.Struct.Dyn., 17, 2000
5ZYU	The crystal structure of humanMGME1 with single strand DNA2 Descriptor: DNA (5'-D(P*CP*AP*AP*CP*AP*AP*CP*A)-3'), GLYCEROL, Mitochondrial genome maintenance exonuclease 1 Authors: Yang, C, Gan, J. Deposit date: 2018-05-28 Release date: 2018-09-19 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.752 Å) Cite: Structural insights into DNA degradation by human mitochondrial nuclease MGME1 Nucleic Acids Res., 46, 2018
6A8R	Crystal structure of DUX4 HD2 domain associated with ERG DNA binding site Descriptor: DNA (5'-D(P*AP*AP*TP*CP*TP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*TP*GP*AP*TP*GP*AP*GP*AP*TP*T)-3'), Double homeobox protein 4 Authors: Dong, X, Zhang, H, Cheng, N, Meng, G. Deposit date: 2018-07-10 Release date: 2018-10-24 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.6 Å) Cite: DUX4HD2-DNAERGstructure reveals new insight into DUX4-Responsive-Element. Leukemia, 33, 2019
3POV	Crystal structure of a SOX-DNA complex Descriptor: DNA (5'-D(*GP*GP*GP*AP*TP*CP*CP*TP*CP*CP*CP*AP*GP*TP*CP*GP*AP*CP*C)-3'), DNA (5'-D(*GP*GP*TP*CP*GP*AP*CP*TP*AP*GP*GP*AP*GP*GP*AP*TP*CP*CP*C)-3'), FORMIC ACID, ... Authors: Bagneris, C, Barrett, T.E. Deposit date: 2010-11-23 Release date: 2011-09-21 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Crystal structure of a KSHV-SOX-DNA complex: insights into the molecular mechanisms underlying DNase activity and host shutoff Nucleic Acids Res., 39, 2011

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